Strain Fitness in Serratia liquefaciens MT49 around IAI46_03695

Experiment: Cobalt chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03690 and IAI46_03695 are separated by 70 nucleotidesIAI46_03695 and IAI46_03700 are separated by 61 nucleotides IAI46_03690: IAI46_03690 - assimilatory sulfite reductase (NADPH) hemoprotein subunit, at 804,909 to 806,624 _03690 IAI46_03695: IAI46_03695 - phosphoadenylyl-sulfate reductase, at 806,695 to 807,429 _03695 IAI46_03700: IAI46_03700 - aminopeptidase, at 807,491 to 808,567 _03700 Position (kb) 806 807 808Strain fitness (log2 ratio) -1 0 1at 805.708 kb on - strand, within IAI46_03690at 805.735 kb on - strand, within IAI46_03690at 805.737 kb on - strand, within IAI46_03690at 805.751 kb on + strand, within IAI46_03690at 805.752 kb on - strand, within IAI46_03690at 805.833 kb on + strand, within IAI46_03690at 805.834 kb on - strand, within IAI46_03690at 805.859 kb on + strand, within IAI46_03690at 805.859 kb on + strand, within IAI46_03690at 805.859 kb on + strand, within IAI46_03690at 805.956 kb on - strand, within IAI46_03690at 805.967 kb on + strand, within IAI46_03690at 806.301 kb on - strand, within IAI46_03690at 806.301 kb on - strand, within IAI46_03690at 806.412 kb on + strand, within IAI46_03690at 806.412 kb on + strand, within IAI46_03690at 806.414 kb on + strand, within IAI46_03690at 806.414 kb on + strand, within IAI46_03690at 806.415 kb on - strand, within IAI46_03690at 806.463 kb on + strandat 806.463 kb on + strandat 806.464 kb on - strandat 806.474 kb on + strandat 806.593 kb on + strandat 806.667 kb on - strandat 806.762 kb on + strandat 806.762 kb on + strandat 806.763 kb on - strandat 806.766 kb on + strandat 806.767 kb on - strandat 806.767 kb on - strandat 806.767 kb on - strandat 806.873 kb on + strand, within IAI46_03695at 806.873 kb on + strand, within IAI46_03695at 806.874 kb on - strand, within IAI46_03695at 806.936 kb on - strand, within IAI46_03695at 806.953 kb on + strand, within IAI46_03695at 806.953 kb on + strand, within IAI46_03695at 807.085 kb on + strand, within IAI46_03695at 807.086 kb on - strand, within IAI46_03695at 807.088 kb on - strand, within IAI46_03695at 807.200 kb on + strand, within IAI46_03695at 807.272 kb on - strand, within IAI46_03695at 807.295 kb on + strand, within IAI46_03695at 807.296 kb on - strand, within IAI46_03695at 807.296 kb on - strand, within IAI46_03695at 807.296 kb on - strand, within IAI46_03695at 807.319 kb on + strand, within IAI46_03695at 807.319 kb on + strand, within IAI46_03695at 807.319 kb on + strand, within IAI46_03695at 807.319 kb on + strand, within IAI46_03695at 807.320 kb on - strand, within IAI46_03695at 807.320 kb on - strand, within IAI46_03695at 807.320 kb on - strand, within IAI46_03695at 807.428 kb on - strandat 807.428 kb on - strandat 807.435 kb on + strandat 807.436 kb on - strandat 807.436 kb on - strandat 807.494 kb on - strandat 807.616 kb on - strand, within IAI46_03700at 807.895 kb on + strand, within IAI46_03700at 807.915 kb on + strand, within IAI46_03700at 807.916 kb on - strand, within IAI46_03700at 807.950 kb on - strand, within IAI46_03700at 807.960 kb on - strand, within IAI46_03700at 807.964 kb on + strand, within IAI46_03700at 807.965 kb on - strand, within IAI46_03700at 807.999 kb on + strand, within IAI46_03700at 808.078 kb on + strand, within IAI46_03700at 808.079 kb on - strand, within IAI46_03700at 808.191 kb on + strand, within IAI46_03700at 808.191 kb on + strand, within IAI46_03700at 808.191 kb on + strand, within IAI46_03700at 808.192 kb on - strand, within IAI46_03700at 808.192 kb on - strand, within IAI46_03700at 808.243 kb on + strand, within IAI46_03700at 808.274 kb on - strand, within IAI46_03700at 808.305 kb on + strand, within IAI46_03700at 808.306 kb on - strand, within IAI46_03700

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
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805,708 - IAI46_03690 0.47 -0.4
805,735 - IAI46_03690 0.48 +0.2
805,737 - IAI46_03690 0.48 -0.7
805,751 + IAI46_03690 0.49 -0.2
805,752 - IAI46_03690 0.49 +0.6
805,833 + IAI46_03690 0.54 +0.6
805,834 - IAI46_03690 0.54 -0.1
805,859 + IAI46_03690 0.55 -0.6
805,859 + IAI46_03690 0.55 +0.0
805,859 + IAI46_03690 0.55 +0.9
805,956 - IAI46_03690 0.61 -0.7
805,967 + IAI46_03690 0.62 +0.6
806,301 - IAI46_03690 0.81 -1.2
806,301 - IAI46_03690 0.81 +0.6
806,412 + IAI46_03690 0.88 +0.4
806,412 + IAI46_03690 0.88 +1.3
806,414 + IAI46_03690 0.88 -0.5
806,414 + IAI46_03690 0.88 +0.3
806,415 - IAI46_03690 0.88 +0.4
806,463 + +0.6
806,463 + +1.1
806,464 - -0.0
806,474 + -0.1
806,593 + +0.2
806,667 - -0.3
806,762 + -0.6
806,762 + +0.5
806,763 - -0.0
806,766 + +0.5
806,767 - -0.5
806,767 - +0.0
806,767 - -0.4
806,873 + IAI46_03695 0.24 -0.4
806,873 + IAI46_03695 0.24 -1.0
806,874 - IAI46_03695 0.24 -0.5
806,936 - IAI46_03695 0.33 -0.5
806,953 + IAI46_03695 0.35 -0.8
806,953 + IAI46_03695 0.35 -0.3
807,085 + IAI46_03695 0.53 -0.1
807,086 - IAI46_03695 0.53 -0.2
807,088 - IAI46_03695 0.53 -1.6
807,200 + IAI46_03695 0.69 -0.2
807,272 - IAI46_03695 0.79 -0.7
807,295 + IAI46_03695 0.82 -0.6
807,296 - IAI46_03695 0.82 +0.1
807,296 - IAI46_03695 0.82 +0.3
807,296 - IAI46_03695 0.82 +0.0
807,319 + IAI46_03695 0.85 +0.9
807,319 + IAI46_03695 0.85 +0.7
807,319 + IAI46_03695 0.85 -0.4
807,319 + IAI46_03695 0.85 +0.5
807,320 - IAI46_03695 0.85 -0.4
807,320 - IAI46_03695 0.85 -0.8
807,320 - IAI46_03695 0.85 +0.2
807,428 - +0.8
807,428 - +0.8
807,435 + -0.2
807,436 - +0.1
807,436 - -0.0
807,494 - +0.5
807,616 - IAI46_03700 0.12 +0.1
807,895 + IAI46_03700 0.38 +0.1
807,915 + IAI46_03700 0.39 -0.2
807,916 - IAI46_03700 0.39 +0.5
807,950 - IAI46_03700 0.43 +0.0
807,960 - IAI46_03700 0.44 -0.5
807,964 + IAI46_03700 0.44 +0.8
807,965 - IAI46_03700 0.44 +0.7
807,999 + IAI46_03700 0.47 +0.2
808,078 + IAI46_03700 0.55 +0.5
808,079 - IAI46_03700 0.55 -0.2
808,191 + IAI46_03700 0.65 +0.3
808,191 + IAI46_03700 0.65 +0.3
808,191 + IAI46_03700 0.65 +1.1
808,192 - IAI46_03700 0.65 +0.3
808,192 - IAI46_03700 0.65 -0.0
808,243 + IAI46_03700 0.70 -0.2
808,274 - IAI46_03700 0.73 -0.1
808,305 + IAI46_03700 0.76 -0.1
808,306 - IAI46_03700 0.76 +0.2

Or see this region's nucleotide sequence