Strain Fitness in Serratia liquefaciens MT49 around IAI46_03600

Experiment: Cobalt chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03595 and IAI46_03600 are separated by 9 nucleotidesIAI46_03600 and IAI46_03605 are separated by 155 nucleotides IAI46_03595: IAI46_03595 - 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD, at 779,373 to 780,722 _03595 IAI46_03600: IAI46_03600 - GTP diphosphokinase, at 780,732 to 782,963 _03600 IAI46_03605: IAI46_03605 - nucleoside triphosphate pyrophosphohydrolase, at 783,119 to 783,913 _03605 Position (kb) 780 781 782 783Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 779.772 kb on + strand, within IAI46_03595at 780.091 kb on - strand, within IAI46_03595at 780.111 kb on - strand, within IAI46_03595at 780.141 kb on + strand, within IAI46_03595at 780.141 kb on + strand, within IAI46_03595at 780.141 kb on + strand, within IAI46_03595at 780.141 kb on + strand, within IAI46_03595at 780.142 kb on - strand, within IAI46_03595at 780.142 kb on - strand, within IAI46_03595at 780.145 kb on - strand, within IAI46_03595at 780.161 kb on - strand, within IAI46_03595at 780.161 kb on - strand, within IAI46_03595at 780.166 kb on + strand, within IAI46_03595at 780.166 kb on + strand, within IAI46_03595at 780.167 kb on - strand, within IAI46_03595at 780.167 kb on - strand, within IAI46_03595at 780.196 kb on + strand, within IAI46_03595at 780.196 kb on + strand, within IAI46_03595at 780.208 kb on + strand, within IAI46_03595at 780.208 kb on + strand, within IAI46_03595at 780.209 kb on - strand, within IAI46_03595at 780.209 kb on - strand, within IAI46_03595at 780.209 kb on - strand, within IAI46_03595at 780.248 kb on + strand, within IAI46_03595at 780.248 kb on + strand, within IAI46_03595at 780.249 kb on - strand, within IAI46_03595at 780.340 kb on + strand, within IAI46_03595at 780.340 kb on + strand, within IAI46_03595at 780.340 kb on + strand, within IAI46_03595at 780.340 kb on + strand, within IAI46_03595at 780.341 kb on - strand, within IAI46_03595at 780.341 kb on - strand, within IAI46_03595at 780.341 kb on - strand, within IAI46_03595at 780.341 kb on - strand, within IAI46_03595at 780.341 kb on - strand, within IAI46_03595at 780.341 kb on - strand, within IAI46_03595at 780.362 kb on - strand, within IAI46_03595at 780.362 kb on - strand, within IAI46_03595at 780.376 kb on - strand, within IAI46_03595at 780.377 kb on + strand, within IAI46_03595at 780.377 kb on + strand, within IAI46_03595at 780.378 kb on - strand, within IAI46_03595at 780.386 kb on + strand, within IAI46_03595at 780.387 kb on - strand, within IAI46_03595at 780.390 kb on - strand, within IAI46_03595at 780.393 kb on - strand, within IAI46_03595at 780.524 kb on + strand, within IAI46_03595at 780.525 kb on - strand, within IAI46_03595at 780.531 kb on - strand, within IAI46_03595at 780.555 kb on + strand, within IAI46_03595at 780.555 kb on + strand, within IAI46_03595at 780.555 kb on + strand, within IAI46_03595at 780.556 kb on - strand, within IAI46_03595at 780.556 kb on - strand, within IAI46_03595at 780.556 kb on - strand, within IAI46_03595at 780.644 kb on + strandat 780.644 kb on + strandat 780.721 kb on - strandat 780.721 kb on - strandat 780.813 kb on - strandat 780.881 kb on + strandat 780.881 kb on + strandat 780.932 kb on + strandat 781.044 kb on + strand, within IAI46_03600at 781.044 kb on + strand, within IAI46_03600at 781.044 kb on + strand, within IAI46_03600at 781.045 kb on - strand, within IAI46_03600at 781.045 kb on - strand, within IAI46_03600at 781.067 kb on + strand, within IAI46_03600at 781.271 kb on + strand, within IAI46_03600at 781.275 kb on + strand, within IAI46_03600at 781.275 kb on + strand, within IAI46_03600at 781.275 kb on + strand, within IAI46_03600at 781.276 kb on - strand, within IAI46_03600at 781.276 kb on - strand, within IAI46_03600at 781.276 kb on - strand, within IAI46_03600at 781.362 kb on + strand, within IAI46_03600at 781.363 kb on - strand, within IAI46_03600at 781.363 kb on - strand, within IAI46_03600at 781.363 kb on - strand, within IAI46_03600at 781.443 kb on - strand, within IAI46_03600at 781.479 kb on + strand, within IAI46_03600at 781.479 kb on + strand, within IAI46_03600at 781.479 kb on + strand, within IAI46_03600at 781.479 kb on + strand, within IAI46_03600at 781.479 kb on + strand, within IAI46_03600at 781.480 kb on - strand, within IAI46_03600at 781.480 kb on - strand, within IAI46_03600at 781.500 kb on + strand, within IAI46_03600at 781.500 kb on + strand, within IAI46_03600at 781.501 kb on - strand, within IAI46_03600at 781.501 kb on - strand, within IAI46_03600at 781.600 kb on - strand, within IAI46_03600at 781.622 kb on + strand, within IAI46_03600at 781.660 kb on - strand, within IAI46_03600at 781.660 kb on - strand, within IAI46_03600at 781.660 kb on - strand, within IAI46_03600at 781.705 kb on + strand, within IAI46_03600at 781.705 kb on + strand, within IAI46_03600at 781.705 kb on + strand, within IAI46_03600at 781.705 kb on + strand, within IAI46_03600at 781.705 kb on + strand, within IAI46_03600at 781.706 kb on - strand, within IAI46_03600at 781.708 kb on + strand, within IAI46_03600at 781.708 kb on + strand, within IAI46_03600at 781.837 kb on - strand, within IAI46_03600at 781.948 kb on - strand, within IAI46_03600at 781.951 kb on + strand, within IAI46_03600at 781.951 kb on + strand, within IAI46_03600at 781.951 kb on + strand, within IAI46_03600at 781.952 kb on - strand, within IAI46_03600at 781.952 kb on - strand, within IAI46_03600at 781.994 kb on + strand, within IAI46_03600at 781.995 kb on - strand, within IAI46_03600at 782.013 kb on + strand, within IAI46_03600at 782.014 kb on - strand, within IAI46_03600at 782.014 kb on - strand, within IAI46_03600at 782.018 kb on + strand, within IAI46_03600at 782.018 kb on + strand, within IAI46_03600at 782.018 kb on + strand, within IAI46_03600at 782.018 kb on + strand, within IAI46_03600at 782.019 kb on - strand, within IAI46_03600at 782.081 kb on + strand, within IAI46_03600at 782.081 kb on + strand, within IAI46_03600at 782.081 kb on + strand, within IAI46_03600at 782.081 kb on + strand, within IAI46_03600at 782.081 kb on + strand, within IAI46_03600at 782.085 kb on + strand, within IAI46_03600at 782.172 kb on + strand, within IAI46_03600at 782.173 kb on - strand, within IAI46_03600at 782.173 kb on - strand, within IAI46_03600at 782.173 kb on - strand, within IAI46_03600at 782.174 kb on + strand, within IAI46_03600at 782.174 kb on + strand, within IAI46_03600at 782.174 kb on + strand, within IAI46_03600at 782.328 kb on + strand, within IAI46_03600at 782.329 kb on - strand, within IAI46_03600at 782.378 kb on + strand, within IAI46_03600at 782.378 kb on + strand, within IAI46_03600at 782.379 kb on - strand, within IAI46_03600at 782.379 kb on - strand, within IAI46_03600at 782.533 kb on + strand, within IAI46_03600at 782.588 kb on + strand, within IAI46_03600at 782.589 kb on - strand, within IAI46_03600at 782.681 kb on + strand, within IAI46_03600at 782.709 kb on + strand, within IAI46_03600at 782.710 kb on - strand, within IAI46_03600at 782.722 kb on - strand, within IAI46_03600at 782.860 kb on - strandat 782.862 kb on - strandat 782.877 kb on + strandat 782.890 kb on + strandat 782.891 kb on - strandat 782.891 kb on - strandat 782.935 kb on + strandat 782.961 kb on + strandat 782.961 kb on + strandat 783.081 kb on + strandat 783.081 kb on + strandat 783.081 kb on + strandat 783.119 kb on - strandat 783.231 kb on - strand, within IAI46_03605at 783.255 kb on + strand, within IAI46_03605at 783.332 kb on + strand, within IAI46_03605at 783.332 kb on + strand, within IAI46_03605at 783.333 kb on - strand, within IAI46_03605at 783.333 kb on - strand, within IAI46_03605at 783.382 kb on + strand, within IAI46_03605at 783.382 kb on + strand, within IAI46_03605at 783.607 kb on + strand, within IAI46_03605at 783.607 kb on + strand, within IAI46_03605at 783.607 kb on + strand, within IAI46_03605at 783.608 kb on - strand, within IAI46_03605at 783.608 kb on - strand, within IAI46_03605at 783.608 kb on - strand, within IAI46_03605at 783.635 kb on + strand, within IAI46_03605at 783.635 kb on + strand, within IAI46_03605at 783.636 kb on - strand, within IAI46_03605at 783.636 kb on - strand, within IAI46_03605at 783.757 kb on + strand, within IAI46_03605at 783.758 kb on - strand, within IAI46_03605at 783.817 kb on - strand, within IAI46_03605at 783.817 kb on - strand, within IAI46_03605at 783.826 kb on + strand, within IAI46_03605at 783.826 kb on + strand, within IAI46_03605at 783.827 kb on - strand, within IAI46_03605at 783.912 kb on - strandat 783.932 kb on + strandat 783.932 kb on + strandat 783.947 kb on - strandat 783.952 kb on - strandat 783.952 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
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779,772 + IAI46_03595 0.30 +0.4
780,091 - IAI46_03595 0.53 -0.5
780,111 - IAI46_03595 0.55 -0.5
780,141 + IAI46_03595 0.57 +0.0
780,141 + IAI46_03595 0.57 +0.5
780,141 + IAI46_03595 0.57 -0.1
780,141 + IAI46_03595 0.57 +0.6
780,142 - IAI46_03595 0.57 +0.2
780,142 - IAI46_03595 0.57 +1.1
780,145 - IAI46_03595 0.57 +0.5
780,161 - IAI46_03595 0.58 +0.8
780,161 - IAI46_03595 0.58 +0.5
780,166 + IAI46_03595 0.59 -0.0
780,166 + IAI46_03595 0.59 +0.8
780,167 - IAI46_03595 0.59 -0.2
780,167 - IAI46_03595 0.59 +0.3
780,196 + IAI46_03595 0.61 -0.2
780,196 + IAI46_03595 0.61 +1.9
780,208 + IAI46_03595 0.62 +2.0
780,208 + IAI46_03595 0.62 +0.4
780,209 - IAI46_03595 0.62 -0.9
780,209 - IAI46_03595 0.62 -0.0
780,209 - IAI46_03595 0.62 +0.0
780,248 + IAI46_03595 0.65 +1.0
780,248 + IAI46_03595 0.65 +0.5
780,249 - IAI46_03595 0.65 +0.2
780,340 + IAI46_03595 0.72 +0.9
780,340 + IAI46_03595 0.72 +0.3
780,340 + IAI46_03595 0.72 +1.4
780,340 + IAI46_03595 0.72 +0.8
780,341 - IAI46_03595 0.72 +2.1
780,341 - IAI46_03595 0.72 -0.2
780,341 - IAI46_03595 0.72 +0.2
780,341 - IAI46_03595 0.72 +0.5
780,341 - IAI46_03595 0.72 +0.2
780,341 - IAI46_03595 0.72 +0.5
780,362 - IAI46_03595 0.73 +0.7
780,362 - IAI46_03595 0.73 -0.2
780,376 - IAI46_03595 0.74 -0.1
780,377 + IAI46_03595 0.74 +2.0
780,377 + IAI46_03595 0.74 +1.0
780,378 - IAI46_03595 0.74 -0.3
780,386 + IAI46_03595 0.75 +0.2
780,387 - IAI46_03595 0.75 -0.3
780,390 - IAI46_03595 0.75 -0.5
780,393 - IAI46_03595 0.76 -1.9
780,524 + IAI46_03595 0.85 +0.4
780,525 - IAI46_03595 0.85 +1.1
780,531 - IAI46_03595 0.86 -0.7
780,555 + IAI46_03595 0.88 +0.0
780,555 + IAI46_03595 0.88 +0.1
780,555 + IAI46_03595 0.88 -0.2
780,556 - IAI46_03595 0.88 -1.2
780,556 - IAI46_03595 0.88 -0.9
780,556 - IAI46_03595 0.88 -0.1
780,644 + +0.1
780,644 + +0.1
780,721 - -0.7
780,721 - -1.5
780,813 - -0.6
780,881 + -0.8
780,881 + +0.5
780,932 + -1.4
781,044 + IAI46_03600 0.14 -1.5
781,044 + IAI46_03600 0.14 -1.8
781,044 + IAI46_03600 0.14 -0.7
781,045 - IAI46_03600 0.14 -1.4
781,045 - IAI46_03600 0.14 -0.7
781,067 + IAI46_03600 0.15 -0.9
781,271 + IAI46_03600 0.24 -0.5
781,275 + IAI46_03600 0.24 -0.7
781,275 + IAI46_03600 0.24 -2.0
781,275 + IAI46_03600 0.24 -1.3
781,276 - IAI46_03600 0.24 -0.9
781,276 - IAI46_03600 0.24 -0.3
781,276 - IAI46_03600 0.24 -1.3
781,362 + IAI46_03600 0.28 +0.4
781,363 - IAI46_03600 0.28 -1.6
781,363 - IAI46_03600 0.28 -1.4
781,363 - IAI46_03600 0.28 -1.2
781,443 - IAI46_03600 0.32 +0.3
781,479 + IAI46_03600 0.33 +0.4
781,479 + IAI46_03600 0.33 -1.5
781,479 + IAI46_03600 0.33 -1.6
781,479 + IAI46_03600 0.33 -0.3
781,479 + IAI46_03600 0.33 -1.3
781,480 - IAI46_03600 0.34 -1.0
781,480 - IAI46_03600 0.34 +0.4
781,500 + IAI46_03600 0.34 -1.0
781,500 + IAI46_03600 0.34 -0.6
781,501 - IAI46_03600 0.34 -1.6
781,501 - IAI46_03600 0.34 -0.4
781,600 - IAI46_03600 0.39 -2.8
781,622 + IAI46_03600 0.40 -1.4
781,660 - IAI46_03600 0.42 -0.8
781,660 - IAI46_03600 0.42 -0.8
781,660 - IAI46_03600 0.42 -0.6
781,705 + IAI46_03600 0.44 -1.7
781,705 + IAI46_03600 0.44 -1.3
781,705 + IAI46_03600 0.44 +0.0
781,705 + IAI46_03600 0.44 -0.8
781,705 + IAI46_03600 0.44 -1.6
781,706 - IAI46_03600 0.44 -1.2
781,708 + IAI46_03600 0.44 -0.6
781,708 + IAI46_03600 0.44 -1.0
781,837 - IAI46_03600 0.50 -0.4
781,948 - IAI46_03600 0.54 +0.5
781,951 + IAI46_03600 0.55 -0.2
781,951 + IAI46_03600 0.55 -0.1
781,951 + IAI46_03600 0.55 +0.3
781,952 - IAI46_03600 0.55 -0.5
781,952 - IAI46_03600 0.55 -0.4
781,994 + IAI46_03600 0.57 +0.1
781,995 - IAI46_03600 0.57 -0.5
782,013 + IAI46_03600 0.57 +0.3
782,014 - IAI46_03600 0.57 +0.6
782,014 - IAI46_03600 0.57 +0.7
782,018 + IAI46_03600 0.58 +0.3
782,018 + IAI46_03600 0.58 +0.7
782,018 + IAI46_03600 0.58 +0.0
782,018 + IAI46_03600 0.58 +0.9
782,019 - IAI46_03600 0.58 -0.2
782,081 + IAI46_03600 0.60 -0.9
782,081 + IAI46_03600 0.60 +0.2
782,081 + IAI46_03600 0.60 -0.9
782,081 + IAI46_03600 0.60 -0.2
782,081 + IAI46_03600 0.60 +0.2
782,085 + IAI46_03600 0.61 -1.4
782,172 + IAI46_03600 0.65 +1.1
782,173 - IAI46_03600 0.65 -0.9
782,173 - IAI46_03600 0.65 -1.1
782,173 - IAI46_03600 0.65 +1.0
782,174 + IAI46_03600 0.65 -0.8
782,174 + IAI46_03600 0.65 -0.4
782,174 + IAI46_03600 0.65 -0.7
782,328 + IAI46_03600 0.72 -1.7
782,329 - IAI46_03600 0.72 -0.5
782,378 + IAI46_03600 0.74 -1.1
782,378 + IAI46_03600 0.74 -0.5
782,379 - IAI46_03600 0.74 -0.1
782,379 - IAI46_03600 0.74 -0.9
782,533 + IAI46_03600 0.81 +0.6
782,588 + IAI46_03600 0.83 -0.4
782,589 - IAI46_03600 0.83 -0.9
782,681 + IAI46_03600 0.87 -1.0
782,709 + IAI46_03600 0.89 +1.4
782,710 - IAI46_03600 0.89 +0.4
782,722 - IAI46_03600 0.89 +1.1
782,860 - -1.3
782,862 - -0.9
782,877 + -0.8
782,890 + +0.1
782,891 - -1.0
782,891 - -0.5
782,935 + +0.3
782,961 + +0.2
782,961 + +0.6
783,081 + -0.2
783,081 + +0.2
783,081 + -0.6
783,119 - +0.4
783,231 - IAI46_03605 0.14 -0.2
783,255 + IAI46_03605 0.17 +0.5
783,332 + IAI46_03605 0.27 -0.9
783,332 + IAI46_03605 0.27 -0.6
783,333 - IAI46_03605 0.27 -0.3
783,333 - IAI46_03605 0.27 +0.3
783,382 + IAI46_03605 0.33 +0.3
783,382 + IAI46_03605 0.33 -0.0
783,607 + IAI46_03605 0.61 +0.3
783,607 + IAI46_03605 0.61 +0.1
783,607 + IAI46_03605 0.61 +0.7
783,608 - IAI46_03605 0.62 -0.3
783,608 - IAI46_03605 0.62 -0.4
783,608 - IAI46_03605 0.62 +0.4
783,635 + IAI46_03605 0.65 +0.9
783,635 + IAI46_03605 0.65 +0.2
783,636 - IAI46_03605 0.65 -0.1
783,636 - IAI46_03605 0.65 -0.1
783,757 + IAI46_03605 0.80 -1.2
783,758 - IAI46_03605 0.80 +0.1
783,817 - IAI46_03605 0.88 -0.3
783,817 - IAI46_03605 0.88 -0.7
783,826 + IAI46_03605 0.89 +0.2
783,826 + IAI46_03605 0.89 +0.9
783,827 - IAI46_03605 0.89 -0.6
783,912 - +0.6
783,932 + -0.5
783,932 + -0.1
783,947 - +1.0
783,952 - +0.6
783,952 - -0.1

Or see this region's nucleotide sequence