Strain Fitness in Serratia liquefaciens MT49 around IAI46_03080

Experiment: Cobalt chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03075 and IAI46_03080 are separated by 106 nucleotidesIAI46_03080 and IAI46_03085 are separated by 235 nucleotides IAI46_03075: IAI46_03075 - molecular chaperone DnaK, at 656,523 to 658,436 _03075 IAI46_03080: IAI46_03080 - molecular chaperone DnaJ, at 658,543 to 659,673 _03080 IAI46_03085: IAI46_03085 - Na+/H+ antiporter NhaA, at 659,909 to 661,075 _03085 Position (kb) 658 659 660Strain fitness (log2 ratio) -2 -1 0 1at 658.280 kb on + strandat 658.421 kb on + strandat 658.533 kb on + strandat 659.275 kb on + strand, within IAI46_03080at 659.332 kb on + strand, within IAI46_03080at 659.333 kb on - strand, within IAI46_03080at 659.350 kb on - strand, within IAI46_03080at 659.350 kb on - strand, within IAI46_03080at 659.350 kb on - strand, within IAI46_03080at 659.472 kb on + strand, within IAI46_03080at 659.516 kb on + strand, within IAI46_03080at 659.517 kb on - strand, within IAI46_03080at 659.517 kb on - strand, within IAI46_03080at 659.770 kb on + strandat 659.770 kb on + strandat 659.773 kb on - strandat 659.813 kb on + strandat 659.845 kb on - strandat 659.883 kb on + strandat 659.905 kb on + strandat 659.906 kb on - strandat 659.920 kb on + strandat 659.956 kb on + strandat 660.020 kb on + strandat 660.021 kb on - strandat 660.021 kb on - strandat 660.021 kb on - strandat 660.052 kb on + strand, within IAI46_03085at 660.097 kb on + strand, within IAI46_03085at 660.097 kb on + strand, within IAI46_03085at 660.146 kb on - strand, within IAI46_03085at 660.242 kb on + strand, within IAI46_03085at 660.243 kb on - strand, within IAI46_03085at 660.307 kb on + strand, within IAI46_03085at 660.391 kb on + strand, within IAI46_03085at 660.415 kb on - strand, within IAI46_03085at 660.415 kb on - strand, within IAI46_03085at 660.418 kb on + strand, within IAI46_03085at 660.431 kb on + strand, within IAI46_03085at 660.432 kb on - strand, within IAI46_03085at 660.432 kb on - strand, within IAI46_03085at 660.432 kb on - strand, within IAI46_03085at 660.432 kb on - strand, within IAI46_03085at 660.432 kb on - strand, within IAI46_03085at 660.496 kb on + strand, within IAI46_03085at 660.497 kb on - strand, within IAI46_03085at 660.530 kb on + strand, within IAI46_03085at 660.530 kb on + strand, within IAI46_03085at 660.531 kb on - strand, within IAI46_03085at 660.531 kb on - strand, within IAI46_03085at 660.532 kb on + strand, within IAI46_03085at 660.532 kb on + strand, within IAI46_03085at 660.532 kb on + strand, within IAI46_03085at 660.533 kb on - strand, within IAI46_03085at 660.533 kb on - strand, within IAI46_03085at 660.533 kb on - strand, within IAI46_03085at 660.533 kb on - strand, within IAI46_03085at 660.558 kb on + strand, within IAI46_03085at 660.559 kb on - strand, within IAI46_03085at 660.559 kb on - strand, within IAI46_03085at 660.559 kb on - strand, within IAI46_03085at 660.563 kb on - strand, within IAI46_03085

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
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658,280 + +0.2
658,421 + -0.8
658,533 + -0.5
659,275 + IAI46_03080 0.65 +1.2
659,332 + IAI46_03080 0.70 -0.1
659,333 - IAI46_03080 0.70 +0.4
659,350 - IAI46_03080 0.71 -1.7
659,350 - IAI46_03080 0.71 +0.7
659,350 - IAI46_03080 0.71 +1.2
659,472 + IAI46_03080 0.82 +0.2
659,516 + IAI46_03080 0.86 +0.7
659,517 - IAI46_03080 0.86 +0.2
659,517 - IAI46_03080 0.86 +0.4
659,770 + -0.6
659,770 + -1.0
659,773 - +0.6
659,813 + -0.4
659,845 - +0.1
659,883 + -0.5
659,905 + -0.4
659,906 - -0.9
659,920 + -0.4
659,956 + +0.3
660,020 + +0.5
660,021 - -1.9
660,021 - -0.6
660,021 - +0.2
660,052 + IAI46_03085 0.12 +0.7
660,097 + IAI46_03085 0.16 -0.3
660,097 + IAI46_03085 0.16 -0.5
660,146 - IAI46_03085 0.20 -0.1
660,242 + IAI46_03085 0.29 +0.6
660,243 - IAI46_03085 0.29 -0.3
660,307 + IAI46_03085 0.34 +0.2
660,391 + IAI46_03085 0.41 -0.2
660,415 - IAI46_03085 0.43 -0.8
660,415 - IAI46_03085 0.43 -2.4
660,418 + IAI46_03085 0.44 +0.0
660,431 + IAI46_03085 0.45 -1.6
660,432 - IAI46_03085 0.45 -1.5
660,432 - IAI46_03085 0.45 -1.7
660,432 - IAI46_03085 0.45 -1.4
660,432 - IAI46_03085 0.45 -2.7
660,432 - IAI46_03085 0.45 -0.7
660,496 + IAI46_03085 0.50 -0.6
660,497 - IAI46_03085 0.50 -0.4
660,530 + IAI46_03085 0.53 -1.1
660,530 + IAI46_03085 0.53 -1.5
660,531 - IAI46_03085 0.53 -1.2
660,531 - IAI46_03085 0.53 -0.4
660,532 + IAI46_03085 0.53 -0.3
660,532 + IAI46_03085 0.53 -1.3
660,532 + IAI46_03085 0.53 -1.1
660,533 - IAI46_03085 0.53 -1.0
660,533 - IAI46_03085 0.53 +0.2
660,533 - IAI46_03085 0.53 -1.9
660,533 - IAI46_03085 0.53 -1.6
660,558 + IAI46_03085 0.56 -0.2
660,559 - IAI46_03085 0.56 -1.6
660,559 - IAI46_03085 0.56 -1.9
660,559 - IAI46_03085 0.56 -0.7
660,563 - IAI46_03085 0.56 -0.6

Or see this region's nucleotide sequence