Strain Fitness in Serratia liquefaciens MT49 around IAI46_02640

Experiment: Cobalt chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02635 and IAI46_02640 are separated by 159 nucleotidesIAI46_02640 and IAI46_02645 are separated by 16 nucleotides IAI46_02635: IAI46_02635 - APC family permease, at 567,969 to 569,345 _02635 IAI46_02640: IAI46_02640 - CoA-acylating methylmalonate-semialdehyde dehydrogenase, at 569,505 to 571,013 _02640 IAI46_02645: IAI46_02645 - aspartate aminotransferase family protein, at 571,030 to 572,370 _02645 Position (kb) 569 570 571 572Strain fitness (log2 ratio) -2 -1 0 1 2at 568.523 kb on - strand, within IAI46_02635at 568.523 kb on - strand, within IAI46_02635at 568.681 kb on + strand, within IAI46_02635at 568.681 kb on + strand, within IAI46_02635at 568.681 kb on + strand, within IAI46_02635at 568.681 kb on + strand, within IAI46_02635at 568.681 kb on + strand, within IAI46_02635at 568.682 kb on - strand, within IAI46_02635at 568.682 kb on - strand, within IAI46_02635at 568.682 kb on - strand, within IAI46_02635at 568.706 kb on - strand, within IAI46_02635at 568.779 kb on + strand, within IAI46_02635at 568.779 kb on + strand, within IAI46_02635at 568.780 kb on - strand, within IAI46_02635at 568.780 kb on - strand, within IAI46_02635at 568.958 kb on + strand, within IAI46_02635at 568.996 kb on + strand, within IAI46_02635at 568.997 kb on - strand, within IAI46_02635at 569.059 kb on + strand, within IAI46_02635at 569.060 kb on - strand, within IAI46_02635at 569.099 kb on + strand, within IAI46_02635at 569.100 kb on - strand, within IAI46_02635at 569.100 kb on - strand, within IAI46_02635at 569.107 kb on + strand, within IAI46_02635at 569.107 kb on + strand, within IAI46_02635at 569.150 kb on - strand, within IAI46_02635at 569.162 kb on + strand, within IAI46_02635at 569.162 kb on + strand, within IAI46_02635at 569.199 kb on - strand, within IAI46_02635at 569.241 kb on - strandat 569.241 kb on - strandat 569.374 kb on + strandat 569.375 kb on - strandat 569.399 kb on + strandat 569.399 kb on + strandat 569.400 kb on - strandat 569.437 kb on + strandat 569.437 kb on + strandat 569.438 kb on - strandat 569.495 kb on + strandat 569.496 kb on - strandat 569.496 kb on - strandat 569.507 kb on - strandat 569.617 kb on + strandat 569.668 kb on + strand, within IAI46_02640at 569.669 kb on - strand, within IAI46_02640at 569.708 kb on + strand, within IAI46_02640at 569.708 kb on + strand, within IAI46_02640at 569.720 kb on + strand, within IAI46_02640at 569.720 kb on + strand, within IAI46_02640at 569.721 kb on - strand, within IAI46_02640at 569.721 kb on - strand, within IAI46_02640at 569.721 kb on - strand, within IAI46_02640at 569.782 kb on + strand, within IAI46_02640at 569.797 kb on - strand, within IAI46_02640at 569.920 kb on + strand, within IAI46_02640at 569.920 kb on + strand, within IAI46_02640at 569.921 kb on - strand, within IAI46_02640at 569.984 kb on + strand, within IAI46_02640at 570.013 kb on + strand, within IAI46_02640at 570.032 kb on - strand, within IAI46_02640at 570.319 kb on + strand, within IAI46_02640at 570.319 kb on + strand, within IAI46_02640at 570.319 kb on + strand, within IAI46_02640at 570.320 kb on - strand, within IAI46_02640at 570.320 kb on - strand, within IAI46_02640at 570.320 kb on - strand, within IAI46_02640at 570.320 kb on - strand, within IAI46_02640at 570.320 kb on - strand, within IAI46_02640at 570.341 kb on + strand, within IAI46_02640at 570.467 kb on + strand, within IAI46_02640at 570.467 kb on + strand, within IAI46_02640at 570.469 kb on + strand, within IAI46_02640at 570.469 kb on + strand, within IAI46_02640at 570.469 kb on + strand, within IAI46_02640at 570.469 kb on + strand, within IAI46_02640at 570.470 kb on - strand, within IAI46_02640at 570.470 kb on - strand, within IAI46_02640at 570.470 kb on - strand, within IAI46_02640at 570.470 kb on - strand, within IAI46_02640at 570.470 kb on - strand, within IAI46_02640at 570.470 kb on - strand, within IAI46_02640at 570.679 kb on + strand, within IAI46_02640at 570.679 kb on + strand, within IAI46_02640at 570.680 kb on - strand, within IAI46_02640at 570.680 kb on - strand, within IAI46_02640at 570.680 kb on - strand, within IAI46_02640at 570.689 kb on - strand, within IAI46_02640at 570.696 kb on - strand, within IAI46_02640at 570.696 kb on - strand, within IAI46_02640at 570.696 kb on - strand, within IAI46_02640at 570.831 kb on + strand, within IAI46_02640at 570.859 kb on + strand, within IAI46_02640at 570.892 kb on - strandat 570.912 kb on + strandat 570.912 kb on + strandat 570.912 kb on + strandat 570.949 kb on + strandat 571.028 kb on + strandat 571.029 kb on - strandat 571.029 kb on - strandat 571.031 kb on + strandat 571.142 kb on + strandat 571.273 kb on + strand, within IAI46_02645at 571.273 kb on + strand, within IAI46_02645at 571.274 kb on - strand, within IAI46_02645at 571.298 kb on + strand, within IAI46_02645at 571.347 kb on + strand, within IAI46_02645at 571.348 kb on - strand, within IAI46_02645at 571.394 kb on + strand, within IAI46_02645at 571.400 kb on + strand, within IAI46_02645at 571.457 kb on + strand, within IAI46_02645at 571.474 kb on + strand, within IAI46_02645at 571.474 kb on + strand, within IAI46_02645at 571.475 kb on - strand, within IAI46_02645at 571.522 kb on - strand, within IAI46_02645at 571.618 kb on - strand, within IAI46_02645at 571.618 kb on - strand, within IAI46_02645at 571.618 kb on - strand, within IAI46_02645at 571.670 kb on - strand, within IAI46_02645at 571.863 kb on + strand, within IAI46_02645at 571.864 kb on - strand, within IAI46_02645at 571.905 kb on + strand, within IAI46_02645at 571.916 kb on + strand, within IAI46_02645at 571.935 kb on + strand, within IAI46_02645

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
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568,523 - IAI46_02635 0.40 +0.4
568,523 - IAI46_02635 0.40 +0.3
568,681 + IAI46_02635 0.52 -1.9
568,681 + IAI46_02635 0.52 +0.5
568,681 + IAI46_02635 0.52 -0.5
568,681 + IAI46_02635 0.52 +0.7
568,681 + IAI46_02635 0.52 +0.1
568,682 - IAI46_02635 0.52 +0.4
568,682 - IAI46_02635 0.52 +0.2
568,682 - IAI46_02635 0.52 -0.1
568,706 - IAI46_02635 0.54 +0.4
568,779 + IAI46_02635 0.59 -0.1
568,779 + IAI46_02635 0.59 -0.5
568,780 - IAI46_02635 0.59 +0.3
568,780 - IAI46_02635 0.59 +0.9
568,958 + IAI46_02635 0.72 +0.8
568,996 + IAI46_02635 0.75 -0.2
568,997 - IAI46_02635 0.75 -0.1
569,059 + IAI46_02635 0.79 -0.5
569,060 - IAI46_02635 0.79 +0.0
569,099 + IAI46_02635 0.82 -0.4
569,100 - IAI46_02635 0.82 +1.6
569,100 - IAI46_02635 0.82 +0.0
569,107 + IAI46_02635 0.83 -0.1
569,107 + IAI46_02635 0.83 -0.2
569,150 - IAI46_02635 0.86 +0.3
569,162 + IAI46_02635 0.87 +1.2
569,162 + IAI46_02635 0.87 +0.6
569,199 - IAI46_02635 0.89 +1.0
569,241 - +0.1
569,241 - -0.5
569,374 + -0.6
569,375 - -0.1
569,399 + +0.6
569,399 + -0.6
569,400 - -2.1
569,437 + +0.7
569,437 + +0.4
569,438 - +1.5
569,495 + -0.2
569,496 - +0.6
569,496 - +0.7
569,507 - -0.5
569,617 + +0.1
569,668 + IAI46_02640 0.11 +0.6
569,669 - IAI46_02640 0.11 +0.3
569,708 + IAI46_02640 0.13 -0.1
569,708 + IAI46_02640 0.13 -0.2
569,720 + IAI46_02640 0.14 +0.7
569,720 + IAI46_02640 0.14 -0.4
569,721 - IAI46_02640 0.14 -2.0
569,721 - IAI46_02640 0.14 +0.0
569,721 - IAI46_02640 0.14 +0.0
569,782 + IAI46_02640 0.18 +0.3
569,797 - IAI46_02640 0.19 -1.5
569,920 + IAI46_02640 0.28 +0.1
569,920 + IAI46_02640 0.28 +0.5
569,921 - IAI46_02640 0.28 +0.5
569,984 + IAI46_02640 0.32 +0.6
570,013 + IAI46_02640 0.34 +0.1
570,032 - IAI46_02640 0.35 +0.3
570,319 + IAI46_02640 0.54 +1.9
570,319 + IAI46_02640 0.54 +0.3
570,319 + IAI46_02640 0.54 -0.6
570,320 - IAI46_02640 0.54 +0.2
570,320 - IAI46_02640 0.54 +0.5
570,320 - IAI46_02640 0.54 +0.7
570,320 - IAI46_02640 0.54 -0.6
570,320 - IAI46_02640 0.54 +0.8
570,341 + IAI46_02640 0.55 +0.3
570,467 + IAI46_02640 0.64 -0.1
570,467 + IAI46_02640 0.64 +0.5
570,469 + IAI46_02640 0.64 +0.5
570,469 + IAI46_02640 0.64 +0.8
570,469 + IAI46_02640 0.64 -1.3
570,469 + IAI46_02640 0.64 -0.9
570,470 - IAI46_02640 0.64 -0.7
570,470 - IAI46_02640 0.64 -0.3
570,470 - IAI46_02640 0.64 +0.0
570,470 - IAI46_02640 0.64 +0.2
570,470 - IAI46_02640 0.64 +0.6
570,470 - IAI46_02640 0.64 +0.3
570,679 + IAI46_02640 0.78 +0.2
570,679 + IAI46_02640 0.78 +0.7
570,680 - IAI46_02640 0.78 -0.2
570,680 - IAI46_02640 0.78 -0.5
570,680 - IAI46_02640 0.78 -0.4
570,689 - IAI46_02640 0.78 +0.7
570,696 - IAI46_02640 0.79 +0.2
570,696 - IAI46_02640 0.79 -1.0
570,696 - IAI46_02640 0.79 -0.1
570,831 + IAI46_02640 0.88 -0.8
570,859 + IAI46_02640 0.90 +0.2
570,892 - +0.7
570,912 + -0.3
570,912 + -0.1
570,912 + -0.6
570,949 + -0.1
571,028 + -0.3
571,029 - -0.2
571,029 - -0.1
571,031 + +0.2
571,142 + +0.4
571,273 + IAI46_02645 0.18 +1.4
571,273 + IAI46_02645 0.18 +0.5
571,274 - IAI46_02645 0.18 -0.5
571,298 + IAI46_02645 0.20 -0.6
571,347 + IAI46_02645 0.24 +0.3
571,348 - IAI46_02645 0.24 +0.5
571,394 + IAI46_02645 0.27 -1.0
571,400 + IAI46_02645 0.28 -0.2
571,457 + IAI46_02645 0.32 +1.1
571,474 + IAI46_02645 0.33 +0.2
571,474 + IAI46_02645 0.33 -0.1
571,475 - IAI46_02645 0.33 -1.7
571,522 - IAI46_02645 0.37 +1.0
571,618 - IAI46_02645 0.44 +0.1
571,618 - IAI46_02645 0.44 +1.3
571,618 - IAI46_02645 0.44 +0.2
571,670 - IAI46_02645 0.48 +0.5
571,863 + IAI46_02645 0.62 +0.6
571,864 - IAI46_02645 0.62 +0.1
571,905 + IAI46_02645 0.65 +0.2
571,916 + IAI46_02645 0.66 +0.3
571,935 + IAI46_02645 0.67 +0.3

Or see this region's nucleotide sequence