Strain Fitness in Serratia liquefaciens MT49 around IAI46_02055

Experiment: Cobalt chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02045 and IAI46_02050 are separated by 432 nucleotidesIAI46_02050 and IAI46_02055 are separated by 47 nucleotidesIAI46_02055 and IAI46_02060 overlap by 50 nucleotidesIAI46_02060 and IAI46_02065 are separated by 14 nucleotides IAI46_02045: IAI46_02045 - DUF2618 domain-containing protein, at 438,696 to 438,800 _02045 IAI46_02050: IAI46_02050 - YhbP family protein, at 439,233 to 439,667 _02050 IAI46_02055: IAI46_02055 - NAD(P)H-binding protein, at 439,715 to 440,353 _02055 IAI46_02060: IAI46_02060 - phosphonate metabolism protein PhnP, at 440,304 to 441,086 _02060 IAI46_02065: IAI46_02065 - acetyltransferase, at 441,101 to 441,703 _02065 Position (kb) 439 440 441Strain fitness (log2 ratio) -1 0 1 2at 438.722 kb on + strand, within IAI46_02045at 438.749 kb on + strand, within IAI46_02045at 438.749 kb on + strand, within IAI46_02045at 438.750 kb on - strand, within IAI46_02045at 438.750 kb on - strand, within IAI46_02045at 438.750 kb on - strand, within IAI46_02045at 438.770 kb on + strand, within IAI46_02045at 438.771 kb on - strand, within IAI46_02045at 438.805 kb on - strandat 438.805 kb on - strandat 438.869 kb on + strandat 438.869 kb on + strandat 438.880 kb on + strandat 438.903 kb on - strandat 438.921 kb on + strandat 438.922 kb on - strandat 438.922 kb on - strandat 438.922 kb on - strandat 438.935 kb on + strandat 438.942 kb on - strandat 438.952 kb on + strandat 438.952 kb on + strandat 438.953 kb on - strandat 438.953 kb on - strandat 438.953 kb on - strandat 438.964 kb on + strandat 438.980 kb on - strandat 439.049 kb on + strandat 439.050 kb on - strandat 439.051 kb on + strandat 439.052 kb on - strandat 439.052 kb on - strandat 439.088 kb on - strandat 439.089 kb on + strandat 439.096 kb on - strandat 439.096 kb on - strandat 439.239 kb on - strandat 439.259 kb on + strandat 439.260 kb on - strandat 439.260 kb on - strandat 439.288 kb on + strand, within IAI46_02050at 439.288 kb on + strand, within IAI46_02050at 439.288 kb on + strand, within IAI46_02050at 439.319 kb on + strand, within IAI46_02050at 439.319 kb on + strand, within IAI46_02050at 439.319 kb on + strand, within IAI46_02050at 439.320 kb on - strand, within IAI46_02050at 439.320 kb on - strand, within IAI46_02050at 439.320 kb on - strand, within IAI46_02050at 439.342 kb on - strand, within IAI46_02050at 439.547 kb on + strand, within IAI46_02050at 439.548 kb on - strand, within IAI46_02050at 439.626 kb on - strandat 439.680 kb on - strandat 439.714 kb on + strandat 439.715 kb on - strandat 439.907 kb on - strand, within IAI46_02055at 439.968 kb on - strand, within IAI46_02055at 440.068 kb on + strand, within IAI46_02055at 440.068 kb on + strand, within IAI46_02055at 440.068 kb on + strand, within IAI46_02055at 440.069 kb on - strand, within IAI46_02055at 440.069 kb on - strand, within IAI46_02055at 440.069 kb on - strand, within IAI46_02055at 440.079 kb on - strand, within IAI46_02055at 440.081 kb on - strand, within IAI46_02055at 440.160 kb on + strand, within IAI46_02055at 440.215 kb on + strand, within IAI46_02055at 440.436 kb on + strand, within IAI46_02060at 440.437 kb on - strand, within IAI46_02060at 440.437 kb on - strand, within IAI46_02060at 440.442 kb on - strand, within IAI46_02060at 440.566 kb on - strand, within IAI46_02060at 440.612 kb on - strand, within IAI46_02060at 440.612 kb on - strand, within IAI46_02060at 440.645 kb on - strand, within IAI46_02060at 440.797 kb on + strand, within IAI46_02060at 440.839 kb on - strand, within IAI46_02060at 440.847 kb on + strand, within IAI46_02060at 440.847 kb on + strand, within IAI46_02060at 440.848 kb on - strand, within IAI46_02060at 441.105 kb on - strandat 441.105 kb on - strandat 441.105 kb on - strandat 441.108 kb on + strandat 441.109 kb on - strandat 441.109 kb on - strandat 441.267 kb on + strand, within IAI46_02065at 441.268 kb on - strand, within IAI46_02065

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
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438,722 + IAI46_02045 0.25 -1.3
438,749 + IAI46_02045 0.50 +0.0
438,749 + IAI46_02045 0.50 -0.3
438,750 - IAI46_02045 0.51 -0.2
438,750 - IAI46_02045 0.51 -0.1
438,750 - IAI46_02045 0.51 -0.6
438,770 + IAI46_02045 0.70 +0.3
438,771 - IAI46_02045 0.71 +1.2
438,805 - -0.1
438,805 - -0.4
438,869 + +1.2
438,869 + -0.0
438,880 + +0.9
438,903 - -0.5
438,921 + +0.1
438,922 - +0.5
438,922 - +0.8
438,922 - +0.1
438,935 + -0.0
438,942 - -0.5
438,952 + +1.0
438,952 + -0.3
438,953 - -0.6
438,953 - -0.2
438,953 - +0.4
438,964 + +1.6
438,980 - +0.6
439,049 + -0.4
439,050 - -0.5
439,051 + -0.2
439,052 - +0.1
439,052 - -0.0
439,088 - +0.8
439,089 + +0.8
439,096 - -0.6
439,096 - -0.8
439,239 - +0.9
439,259 + +0.9
439,260 - +0.3
439,260 - +0.8
439,288 + IAI46_02050 0.13 +0.8
439,288 + IAI46_02050 0.13 -0.5
439,288 + IAI46_02050 0.13 -0.8
439,319 + IAI46_02050 0.20 +1.5
439,319 + IAI46_02050 0.20 +0.4
439,319 + IAI46_02050 0.20 +1.4
439,320 - IAI46_02050 0.20 +0.4
439,320 - IAI46_02050 0.20 -0.1
439,320 - IAI46_02050 0.20 +1.9
439,342 - IAI46_02050 0.25 -0.3
439,547 + IAI46_02050 0.72 +1.7
439,548 - IAI46_02050 0.72 +0.1
439,626 - +1.3
439,680 - -0.3
439,714 + +0.5
439,715 - -0.4
439,907 - IAI46_02055 0.30 -0.6
439,968 - IAI46_02055 0.40 -0.3
440,068 + IAI46_02055 0.55 -1.0
440,068 + IAI46_02055 0.55 +0.4
440,068 + IAI46_02055 0.55 +0.1
440,069 - IAI46_02055 0.55 +1.4
440,069 - IAI46_02055 0.55 -0.4
440,069 - IAI46_02055 0.55 -0.6
440,079 - IAI46_02055 0.57 +0.5
440,081 - IAI46_02055 0.57 +0.7
440,160 + IAI46_02055 0.70 +0.7
440,215 + IAI46_02055 0.78 +0.4
440,436 + IAI46_02060 0.17 +0.1
440,437 - IAI46_02060 0.17 -1.0
440,437 - IAI46_02060 0.17 +0.3
440,442 - IAI46_02060 0.18 +0.4
440,566 - IAI46_02060 0.33 -0.1
440,612 - IAI46_02060 0.39 -0.3
440,612 - IAI46_02060 0.39 -0.1
440,645 - IAI46_02060 0.44 -0.9
440,797 + IAI46_02060 0.63 +0.3
440,839 - IAI46_02060 0.68 -0.2
440,847 + IAI46_02060 0.69 +0.3
440,847 + IAI46_02060 0.69 -0.3
440,848 - IAI46_02060 0.69 -0.1
441,105 - +0.1
441,105 - -0.4
441,105 - +0.9
441,108 + -1.6
441,109 - -0.7
441,109 - +0.8
441,267 + IAI46_02065 0.28 +1.4
441,268 - IAI46_02065 0.28 +0.6

Or see this region's nucleotide sequence