Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2981

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2980 and Echvi_2981 are separated by 58 nucleotidesEchvi_2981 and Echvi_2982 are separated by 44 nucleotides Echvi_2980: Echvi_2980 - probable methyltransferase, at 3,561,176 to 3,562,138 _2980 Echvi_2981: Echvi_2981 - pseudouridylate synthase I, at 3,562,197 to 3,562,985 _2981 Echvi_2982: Echvi_2982 - Phosphomannomutase, at 3,563,030 to 3,564,757 _2982 Position (kb) 3562 3563Strain fitness (log2 ratio) -3 -2 -1 0 1at 3561.323 kb on + strand, within Echvi_2980at 3561.324 kb on - strand, within Echvi_2980at 3561.324 kb on - strand, within Echvi_2980at 3561.324 kb on - strand, within Echvi_2980at 3561.329 kb on - strand, within Echvi_2980at 3561.361 kb on + strand, within Echvi_2980at 3561.362 kb on - strand, within Echvi_2980at 3561.362 kb on - strand, within Echvi_2980at 3561.458 kb on + strand, within Echvi_2980at 3561.491 kb on + strand, within Echvi_2980at 3561.497 kb on - strand, within Echvi_2980at 3561.502 kb on + strand, within Echvi_2980at 3561.502 kb on + strand, within Echvi_2980at 3561.502 kb on + strand, within Echvi_2980at 3561.502 kb on + strand, within Echvi_2980at 3561.502 kb on + strand, within Echvi_2980at 3561.503 kb on - strand, within Echvi_2980at 3561.505 kb on - strand, within Echvi_2980at 3561.517 kb on - strand, within Echvi_2980at 3561.529 kb on + strand, within Echvi_2980at 3561.588 kb on - strand, within Echvi_2980at 3561.588 kb on - strand, within Echvi_2980at 3561.665 kb on - strand, within Echvi_2980at 3561.688 kb on + strand, within Echvi_2980at 3561.689 kb on - strand, within Echvi_2980at 3561.709 kb on + strand, within Echvi_2980at 3561.709 kb on + strand, within Echvi_2980at 3561.709 kb on + strand, within Echvi_2980at 3561.709 kb on + strand, within Echvi_2980at 3561.710 kb on - strand, within Echvi_2980at 3561.710 kb on - strand, within Echvi_2980at 3561.710 kb on - strand, within Echvi_2980at 3561.710 kb on - strand, within Echvi_2980at 3561.732 kb on - strand, within Echvi_2980at 3561.736 kb on - strand, within Echvi_2980at 3561.774 kb on + strand, within Echvi_2980at 3561.774 kb on + strand, within Echvi_2980at 3561.774 kb on + strand, within Echvi_2980at 3561.785 kb on + strand, within Echvi_2980at 3561.786 kb on - strand, within Echvi_2980at 3561.786 kb on - strand, within Echvi_2980at 3561.786 kb on - strand, within Echvi_2980at 3561.786 kb on - strand, within Echvi_2980at 3561.786 kb on - strand, within Echvi_2980at 3561.787 kb on + strand, within Echvi_2980at 3561.787 kb on + strand, within Echvi_2980at 3561.788 kb on - strand, within Echvi_2980at 3561.788 kb on - strand, within Echvi_2980at 3561.806 kb on - strand, within Echvi_2980at 3561.845 kb on - strand, within Echvi_2980at 3561.896 kb on + strand, within Echvi_2980at 3561.896 kb on + strand, within Echvi_2980at 3561.896 kb on + strand, within Echvi_2980at 3561.896 kb on + strand, within Echvi_2980at 3561.897 kb on - strand, within Echvi_2980at 3561.897 kb on - strand, within Echvi_2980at 3561.897 kb on - strand, within Echvi_2980at 3561.923 kb on - strand, within Echvi_2980at 3561.927 kb on - strand, within Echvi_2980at 3561.954 kb on + strand, within Echvi_2980at 3562.028 kb on + strand, within Echvi_2980at 3562.030 kb on + strand, within Echvi_2980at 3562.031 kb on - strand, within Echvi_2980at 3562.106 kb on + strandat 3562.107 kb on - strandat 3562.107 kb on - strandat 3562.107 kb on - strandat 3562.107 kb on - strandat 3562.162 kb on - strandat 3562.167 kb on - strandat 3562.223 kb on - strandat 3562.227 kb on + strandat 3562.228 kb on - strandat 3562.382 kb on + strand, within Echvi_2981at 3562.382 kb on + strand, within Echvi_2981at 3562.438 kb on + strand, within Echvi_2981at 3562.438 kb on + strand, within Echvi_2981at 3562.438 kb on + strand, within Echvi_2981at 3562.439 kb on - strand, within Echvi_2981at 3562.439 kb on - strand, within Echvi_2981at 3562.508 kb on + strand, within Echvi_2981at 3562.509 kb on - strand, within Echvi_2981at 3562.511 kb on + strand, within Echvi_2981at 3562.511 kb on + strand, within Echvi_2981at 3562.647 kb on + strand, within Echvi_2981at 3562.648 kb on - strand, within Echvi_2981at 3562.744 kb on - strand, within Echvi_2981at 3562.745 kb on + strand, within Echvi_2981at 3562.781 kb on + strand, within Echvi_2981at 3562.781 kb on + strand, within Echvi_2981at 3562.814 kb on + strand, within Echvi_2981at 3563.014 kb on - strandat 3563.016 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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3,561,323 + Echvi_2980 0.15 -2.8
3,561,324 - Echvi_2980 0.15 -1.5
3,561,324 - Echvi_2980 0.15 -1.2
3,561,324 - Echvi_2980 0.15 -1.1
3,561,329 - Echvi_2980 0.16 -0.5
3,561,361 + Echvi_2980 0.19 -0.2
3,561,362 - Echvi_2980 0.19 -1.1
3,561,362 - Echvi_2980 0.19 -0.7
3,561,458 + Echvi_2980 0.29 -0.6
3,561,491 + Echvi_2980 0.33 -0.9
3,561,497 - Echvi_2980 0.33 +0.1
3,561,502 + Echvi_2980 0.34 -1.6
3,561,502 + Echvi_2980 0.34 -2.4
3,561,502 + Echvi_2980 0.34 -0.9
3,561,502 + Echvi_2980 0.34 +0.2
3,561,502 + Echvi_2980 0.34 -1.4
3,561,503 - Echvi_2980 0.34 -0.8
3,561,505 - Echvi_2980 0.34 -1.3
3,561,517 - Echvi_2980 0.35 -0.9
3,561,529 + Echvi_2980 0.37 -0.7
3,561,588 - Echvi_2980 0.43 -1.5
3,561,588 - Echvi_2980 0.43 +0.7
3,561,665 - Echvi_2980 0.51 -0.7
3,561,688 + Echvi_2980 0.53 -0.3
3,561,689 - Echvi_2980 0.53 -0.9
3,561,709 + Echvi_2980 0.55 -1.1
3,561,709 + Echvi_2980 0.55 -1.4
3,561,709 + Echvi_2980 0.55 -0.2
3,561,709 + Echvi_2980 0.55 +1.3
3,561,710 - Echvi_2980 0.55 -2.4
3,561,710 - Echvi_2980 0.55 -1.6
3,561,710 - Echvi_2980 0.55 -1.1
3,561,710 - Echvi_2980 0.55 -0.1
3,561,732 - Echvi_2980 0.58 -0.0
3,561,736 - Echvi_2980 0.58 -2.0
3,561,774 + Echvi_2980 0.62 -0.6
3,561,774 + Echvi_2980 0.62 -2.4
3,561,774 + Echvi_2980 0.62 -0.5
3,561,785 + Echvi_2980 0.63 -1.0
3,561,786 - Echvi_2980 0.63 -0.3
3,561,786 - Echvi_2980 0.63 -0.4
3,561,786 - Echvi_2980 0.63 -0.9
3,561,786 - Echvi_2980 0.63 -1.9
3,561,786 - Echvi_2980 0.63 -1.6
3,561,787 + Echvi_2980 0.63 -0.1
3,561,787 + Echvi_2980 0.63 +0.5
3,561,788 - Echvi_2980 0.64 -1.6
3,561,788 - Echvi_2980 0.64 -0.5
3,561,806 - Echvi_2980 0.65 -0.5
3,561,845 - Echvi_2980 0.69 -1.1
3,561,896 + Echvi_2980 0.75 -0.8
3,561,896 + Echvi_2980 0.75 -1.4
3,561,896 + Echvi_2980 0.75 -0.1
3,561,896 + Echvi_2980 0.75 -0.6
3,561,897 - Echvi_2980 0.75 -1.1
3,561,897 - Echvi_2980 0.75 -1.4
3,561,897 - Echvi_2980 0.75 -0.5
3,561,923 - Echvi_2980 0.78 -1.2
3,561,927 - Echvi_2980 0.78 -0.6
3,561,954 + Echvi_2980 0.81 +0.3
3,562,028 + Echvi_2980 0.88 -2.2
3,562,030 + Echvi_2980 0.89 -2.0
3,562,031 - Echvi_2980 0.89 -0.9
3,562,106 + +0.3
3,562,107 - -0.2
3,562,107 - -2.3
3,562,107 - -0.9
3,562,107 - -2.3
3,562,162 - -2.1
3,562,167 - -2.2
3,562,223 - -0.0
3,562,227 + +0.1
3,562,228 - -0.2
3,562,382 + Echvi_2981 0.23 +0.5
3,562,382 + Echvi_2981 0.23 -0.3
3,562,438 + Echvi_2981 0.31 +1.7
3,562,438 + Echvi_2981 0.31 -0.3
3,562,438 + Echvi_2981 0.31 +0.1
3,562,439 - Echvi_2981 0.31 +0.1
3,562,439 - Echvi_2981 0.31 -0.8
3,562,508 + Echvi_2981 0.39 -0.5
3,562,509 - Echvi_2981 0.40 -0.0
3,562,511 + Echvi_2981 0.40 -0.2
3,562,511 + Echvi_2981 0.40 +0.3
3,562,647 + Echvi_2981 0.57 -0.4
3,562,648 - Echvi_2981 0.57 -0.3
3,562,744 - Echvi_2981 0.69 -0.3
3,562,745 + Echvi_2981 0.69 -0.5
3,562,781 + Echvi_2981 0.74 -1.1
3,562,781 + Echvi_2981 0.74 -0.9
3,562,814 + Echvi_2981 0.78 -2.6
3,563,014 - -0.7
3,563,016 + -0.1

Or see this region's nucleotide sequence