Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2614

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2613 and Echvi_2614 overlap by 4 nucleotidesEchvi_2614 and Echvi_2615 overlap by 1 nucleotides Echvi_2613: Echvi_2613 - Periplasmic component of the Tol biopolymer transport system, at 3,096,428 to 3,097,711 _2613 Echvi_2614: Echvi_2614 - SusD family., at 3,097,708 to 3,099,327 _2614 Echvi_2615: Echvi_2615 - TonB-linked outer membrane protein, SusC/RagA family, at 3,099,327 to 3,102,392 _2615 Position (kb) 3097 3098 3099 3100Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3096.744 kb on + strand, within Echvi_2613at 3096.745 kb on - strand, within Echvi_2613at 3096.945 kb on + strand, within Echvi_2613at 3096.945 kb on + strand, within Echvi_2613at 3096.946 kb on - strand, within Echvi_2613at 3096.946 kb on - strand, within Echvi_2613at 3096.946 kb on - strand, within Echvi_2613at 3096.946 kb on - strand, within Echvi_2613at 3097.047 kb on + strand, within Echvi_2613at 3097.130 kb on + strand, within Echvi_2613at 3097.151 kb on + strand, within Echvi_2613at 3097.152 kb on - strand, within Echvi_2613at 3097.164 kb on + strand, within Echvi_2613at 3097.184 kb on - strand, within Echvi_2613at 3097.255 kb on - strand, within Echvi_2613at 3097.288 kb on + strand, within Echvi_2613at 3097.347 kb on + strand, within Echvi_2613at 3097.438 kb on + strand, within Echvi_2613at 3097.438 kb on + strand, within Echvi_2613at 3097.438 kb on + strand, within Echvi_2613at 3097.903 kb on + strand, within Echvi_2614at 3097.912 kb on - strand, within Echvi_2614at 3098.071 kb on - strand, within Echvi_2614at 3098.136 kb on + strand, within Echvi_2614at 3098.159 kb on - strand, within Echvi_2614at 3098.191 kb on + strand, within Echvi_2614at 3098.191 kb on + strand, within Echvi_2614at 3098.191 kb on + strand, within Echvi_2614at 3098.192 kb on - strand, within Echvi_2614at 3098.442 kb on - strand, within Echvi_2614at 3098.445 kb on + strand, within Echvi_2614at 3098.458 kb on - strand, within Echvi_2614at 3098.513 kb on - strand, within Echvi_2614at 3098.549 kb on + strand, within Echvi_2614at 3098.549 kb on + strand, within Echvi_2614at 3098.549 kb on + strand, within Echvi_2614at 3098.550 kb on - strand, within Echvi_2614at 3098.622 kb on + strand, within Echvi_2614at 3098.622 kb on + strand, within Echvi_2614at 3098.622 kb on + strand, within Echvi_2614at 3098.622 kb on + strand, within Echvi_2614at 3098.623 kb on - strand, within Echvi_2614at 3098.651 kb on + strand, within Echvi_2614at 3098.655 kb on - strand, within Echvi_2614at 3098.819 kb on + strand, within Echvi_2614at 3098.825 kb on + strand, within Echvi_2614at 3098.960 kb on + strand, within Echvi_2614at 3098.960 kb on + strand, within Echvi_2614at 3098.960 kb on + strand, within Echvi_2614at 3099.077 kb on + strand, within Echvi_2614at 3099.159 kb on - strand, within Echvi_2614at 3099.180 kb on + strandat 3099.185 kb on + strandat 3099.186 kb on - strandat 3099.186 kb on - strandat 3099.264 kb on + strandat 3099.264 kb on + strandat 3099.264 kb on + strandat 3099.264 kb on + strandat 3099.264 kb on + strandat 3099.264 kb on + strandat 3099.265 kb on - strandat 3099.265 kb on - strandat 3099.353 kb on + strandat 3099.353 kb on + strandat 3099.373 kb on + strandat 3099.382 kb on + strandat 3099.386 kb on - strandat 3099.430 kb on - strandat 3099.468 kb on + strandat 3099.469 kb on - strandat 3099.487 kb on + strandat 3099.487 kb on + strandat 3099.487 kb on + strandat 3099.487 kb on + strandat 3099.548 kb on + strandat 3099.565 kb on + strandat 3099.630 kb on - strandat 3099.630 kb on - strandat 3099.672 kb on - strand, within Echvi_2615at 3099.749 kb on + strand, within Echvi_2615at 3099.813 kb on + strand, within Echvi_2615at 3099.814 kb on - strand, within Echvi_2615at 3099.892 kb on + strand, within Echvi_2615at 3099.893 kb on - strand, within Echvi_2615at 3099.903 kb on + strand, within Echvi_2615at 3100.257 kb on + strand, within Echvi_2615at 3100.257 kb on + strand, within Echvi_2615at 3100.303 kb on + strand, within Echvi_2615at 3100.303 kb on + strand, within Echvi_2615at 3100.304 kb on - strand, within Echvi_2615at 3100.317 kb on + strand, within Echvi_2615at 3100.318 kb on - strand, within Echvi_2615

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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3,096,744 + Echvi_2613 0.25 -0.5
3,096,745 - Echvi_2613 0.25 -0.8
3,096,945 + Echvi_2613 0.40 +1.2
3,096,945 + Echvi_2613 0.40 +0.7
3,096,946 - Echvi_2613 0.40 +0.5
3,096,946 - Echvi_2613 0.40 +0.1
3,096,946 - Echvi_2613 0.40 +0.4
3,096,946 - Echvi_2613 0.40 -0.7
3,097,047 + Echvi_2613 0.48 -0.4
3,097,130 + Echvi_2613 0.55 +0.8
3,097,151 + Echvi_2613 0.56 +0.8
3,097,152 - Echvi_2613 0.56 +1.1
3,097,164 + Echvi_2613 0.57 -1.4
3,097,184 - Echvi_2613 0.59 +0.7
3,097,255 - Echvi_2613 0.64 +0.1
3,097,288 + Echvi_2613 0.67 +1.5
3,097,347 + Echvi_2613 0.72 +0.5
3,097,438 + Echvi_2613 0.79 -0.1
3,097,438 + Echvi_2613 0.79 -0.2
3,097,438 + Echvi_2613 0.79 -0.3
3,097,903 + Echvi_2614 0.12 -0.6
3,097,912 - Echvi_2614 0.13 -0.3
3,098,071 - Echvi_2614 0.22 +0.3
3,098,136 + Echvi_2614 0.26 +0.4
3,098,159 - Echvi_2614 0.28 -0.6
3,098,191 + Echvi_2614 0.30 +0.4
3,098,191 + Echvi_2614 0.30 -2.2
3,098,191 + Echvi_2614 0.30 -1.5
3,098,192 - Echvi_2614 0.30 -0.8
3,098,442 - Echvi_2614 0.45 -0.2
3,098,445 + Echvi_2614 0.45 -0.5
3,098,458 - Echvi_2614 0.46 +0.1
3,098,513 - Echvi_2614 0.50 -1.4
3,098,549 + Echvi_2614 0.52 +0.6
3,098,549 + Echvi_2614 0.52 -0.6
3,098,549 + Echvi_2614 0.52 +0.8
3,098,550 - Echvi_2614 0.52 -0.4
3,098,622 + Echvi_2614 0.56 -2.9
3,098,622 + Echvi_2614 0.56 -0.3
3,098,622 + Echvi_2614 0.56 -0.4
3,098,622 + Echvi_2614 0.56 -0.4
3,098,623 - Echvi_2614 0.56 -1.5
3,098,651 + Echvi_2614 0.58 -0.2
3,098,655 - Echvi_2614 0.58 -0.2
3,098,819 + Echvi_2614 0.69 +0.5
3,098,825 + Echvi_2614 0.69 +0.0
3,098,960 + Echvi_2614 0.77 -1.1
3,098,960 + Echvi_2614 0.77 -1.0
3,098,960 + Echvi_2614 0.77 -0.2
3,099,077 + Echvi_2614 0.85 +0.5
3,099,159 - Echvi_2614 0.90 -3.2
3,099,180 + -0.5
3,099,185 + +0.2
3,099,186 - -0.0
3,099,186 - -0.9
3,099,264 + -0.2
3,099,264 + -1.2
3,099,264 + +0.4
3,099,264 + +0.3
3,099,264 + -0.5
3,099,264 + +0.1
3,099,265 - -1.1
3,099,265 - +0.1
3,099,353 + +0.8
3,099,353 + +0.3
3,099,373 + +0.7
3,099,382 + -0.1
3,099,386 - +1.6
3,099,430 - +0.2
3,099,468 + +1.0
3,099,469 - +0.0
3,099,487 + +0.1
3,099,487 + +0.6
3,099,487 + -1.9
3,099,487 + +0.6
3,099,548 + -1.2
3,099,565 + -0.8
3,099,630 - +0.1
3,099,630 - -1.6
3,099,672 - Echvi_2615 0.11 +0.8
3,099,749 + Echvi_2615 0.14 -1.6
3,099,813 + Echvi_2615 0.16 +3.2
3,099,814 - Echvi_2615 0.16 +0.2
3,099,892 + Echvi_2615 0.18 +0.1
3,099,893 - Echvi_2615 0.18 -0.4
3,099,903 + Echvi_2615 0.19 -0.6
3,100,257 + Echvi_2615 0.30 -0.0
3,100,257 + Echvi_2615 0.30 +0.8
3,100,303 + Echvi_2615 0.32 +0.1
3,100,303 + Echvi_2615 0.32 -0.6
3,100,304 - Echvi_2615 0.32 +1.9
3,100,317 + Echvi_2615 0.32 +1.1
3,100,318 - Echvi_2615 0.32 +0.7

Or see this region's nucleotide sequence