Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0861

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0859 and Echvi_0860 are separated by 41 nucleotidesEchvi_0860 and Echvi_0861 are separated by 27 nucleotidesEchvi_0861 and Echvi_0862 are separated by 150 nucleotides Echvi_0859: Echvi_0859 - Predicted molecular chaperone distantly related to HSP70-fold metalloproteases, at 981,093 to 982,169 _0859 Echvi_0860: Echvi_0860 - hypothetical protein, at 982,211 to 982,309 _0860 Echvi_0861: Echvi_0861 - hypothetical protein, at 982,337 to 982,486 _0861 Echvi_0862: Echvi_0862 - Glutamate dehydrogenase/leucine dehydrogenase, at 982,637 to 983,863 _0862 Position (kb) 982 983Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 981.373 kb on + strand, within Echvi_0859at 981.373 kb on + strand, within Echvi_0859at 981.373 kb on + strand, within Echvi_0859at 981.374 kb on - strand, within Echvi_0859at 981.374 kb on - strand, within Echvi_0859at 981.374 kb on - strand, within Echvi_0859at 981.390 kb on - strand, within Echvi_0859at 981.394 kb on + strand, within Echvi_0859at 981.394 kb on + strand, within Echvi_0859at 981.395 kb on - strand, within Echvi_0859at 981.395 kb on - strand, within Echvi_0859at 981.395 kb on - strand, within Echvi_0859at 981.395 kb on - strand, within Echvi_0859at 981.505 kb on + strand, within Echvi_0859at 981.505 kb on + strand, within Echvi_0859at 981.506 kb on - strand, within Echvi_0859at 981.562 kb on - strand, within Echvi_0859at 981.562 kb on - strand, within Echvi_0859at 981.562 kb on - strand, within Echvi_0859at 981.575 kb on + strand, within Echvi_0859at 981.576 kb on - strand, within Echvi_0859at 981.610 kb on - strand, within Echvi_0859at 981.686 kb on - strand, within Echvi_0859at 981.690 kb on + strand, within Echvi_0859at 981.690 kb on + strand, within Echvi_0859at 981.691 kb on - strand, within Echvi_0859at 981.716 kb on + strand, within Echvi_0859at 981.727 kb on + strand, within Echvi_0859at 981.768 kb on + strand, within Echvi_0859at 981.768 kb on + strand, within Echvi_0859at 981.768 kb on + strand, within Echvi_0859at 981.769 kb on - strand, within Echvi_0859at 981.832 kb on + strand, within Echvi_0859at 981.885 kb on + strand, within Echvi_0859at 981.885 kb on + strand, within Echvi_0859at 981.908 kb on - strand, within Echvi_0859at 981.935 kb on + strand, within Echvi_0859at 981.966 kb on + strand, within Echvi_0859at 982.094 kb on + strandat 982.094 kb on + strandat 982.094 kb on + strandat 982.094 kb on + strandat 982.098 kb on - strandat 982.106 kb on - strandat 982.106 kb on - strandat 982.109 kb on + strandat 982.110 kb on - strandat 982.110 kb on - strandat 982.142 kb on + strandat 982.142 kb on + strandat 982.158 kb on + strandat 982.158 kb on + strandat 982.158 kb on + strandat 982.159 kb on - strandat 982.159 kb on - strandat 982.167 kb on + strandat 982.175 kb on + strandat 982.176 kb on - strandat 982.178 kb on + strandat 982.178 kb on + strandat 982.178 kb on + strandat 982.178 kb on + strandat 982.178 kb on + strandat 982.178 kb on + strandat 982.178 kb on + strandat 982.178 kb on + strandat 982.178 kb on + strandat 982.179 kb on - strandat 982.179 kb on - strandat 982.179 kb on - strandat 982.179 kb on - strandat 982.179 kb on - strandat 982.179 kb on - strandat 982.179 kb on - strandat 982.180 kb on + strandat 982.181 kb on - strandat 982.187 kb on - strandat 982.212 kb on + strandat 982.213 kb on - strandat 982.277 kb on + strand, within Echvi_0860at 982.277 kb on + strand, within Echvi_0860at 982.277 kb on + strand, within Echvi_0860at 982.286 kb on + strand, within Echvi_0860at 982.286 kb on + strand, within Echvi_0860at 982.286 kb on + strand, within Echvi_0860at 982.286 kb on + strand, within Echvi_0860at 982.287 kb on - strand, within Echvi_0860at 982.287 kb on - strand, within Echvi_0860at 982.287 kb on - strand, within Echvi_0860at 982.287 kb on - strand, within Echvi_0860at 982.288 kb on + strand, within Echvi_0860at 982.288 kb on + strand, within Echvi_0860at 982.288 kb on + strand, within Echvi_0860at 982.288 kb on + strand, within Echvi_0860at 982.289 kb on - strand, within Echvi_0860at 982.289 kb on - strand, within Echvi_0860at 982.305 kb on - strandat 982.309 kb on + strandat 982.309 kb on + strandat 982.309 kb on + strandat 982.351 kb on + strandat 982.352 kb on - strand, within Echvi_0861at 982.353 kb on + strand, within Echvi_0861at 982.354 kb on - strand, within Echvi_0861at 982.361 kb on + strand, within Echvi_0861at 982.361 kb on + strand, within Echvi_0861at 982.361 kb on + strand, within Echvi_0861at 982.376 kb on - strand, within Echvi_0861at 982.376 kb on - strand, within Echvi_0861at 982.420 kb on + strand, within Echvi_0861at 982.421 kb on - strand, within Echvi_0861at 982.430 kb on - strand, within Echvi_0861at 982.475 kb on + strandat 982.476 kb on - strandat 982.519 kb on + strandat 982.520 kb on - strandat 982.520 kb on - strandat 982.531 kb on + strandat 982.632 kb on - strandat 982.632 kb on - strandat 982.637 kb on - strandat 982.637 kb on - strandat 982.637 kb on - strandat 982.777 kb on + strand, within Echvi_0862at 982.777 kb on + strand, within Echvi_0862at 982.864 kb on + strand, within Echvi_0862at 982.944 kb on + strand, within Echvi_0862at 982.956 kb on - strand, within Echvi_0862at 982.956 kb on - strand, within Echvi_0862at 982.956 kb on - strand, within Echvi_0862at 982.958 kb on + strand, within Echvi_0862at 982.958 kb on + strand, within Echvi_0862at 982.963 kb on + strand, within Echvi_0862at 982.963 kb on + strand, within Echvi_0862at 982.963 kb on + strand, within Echvi_0862at 982.963 kb on + strand, within Echvi_0862at 983.021 kb on + strand, within Echvi_0862at 983.022 kb on - strand, within Echvi_0862at 983.052 kb on + strand, within Echvi_0862at 983.052 kb on + strand, within Echvi_0862at 983.052 kb on + strand, within Echvi_0862at 983.052 kb on + strand, within Echvi_0862at 983.052 kb on + strand, within Echvi_0862at 983.053 kb on - strand, within Echvi_0862at 983.128 kb on - strand, within Echvi_0862at 983.144 kb on + strand, within Echvi_0862at 983.145 kb on - strand, within Echvi_0862at 983.145 kb on - strand, within Echvi_0862at 983.169 kb on - strand, within Echvi_0862at 983.170 kb on + strand, within Echvi_0862at 983.170 kb on + strand, within Echvi_0862at 983.182 kb on + strand, within Echvi_0862at 983.214 kb on + strand, within Echvi_0862at 983.215 kb on - strand, within Echvi_0862at 983.225 kb on + strand, within Echvi_0862at 983.226 kb on - strand, within Echvi_0862at 983.226 kb on - strand, within Echvi_0862at 983.247 kb on + strand, within Echvi_0862at 983.286 kb on + strand, within Echvi_0862at 983.286 kb on + strand, within Echvi_0862at 983.286 kb on + strand, within Echvi_0862at 983.361 kb on + strand, within Echvi_0862at 983.361 kb on + strand, within Echvi_0862at 983.361 kb on + strand, within Echvi_0862at 983.362 kb on - strand, within Echvi_0862at 983.385 kb on + strand, within Echvi_0862at 983.385 kb on + strand, within Echvi_0862at 983.385 kb on + strand, within Echvi_0862at 983.386 kb on - strand, within Echvi_0862at 983.386 kb on - strand, within Echvi_0862at 983.446 kb on - strand, within Echvi_0862at 983.485 kb on - strand, within Echvi_0862

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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981,373 + Echvi_0859 0.26 -0.3
981,373 + Echvi_0859 0.26 +1.6
981,373 + Echvi_0859 0.26 +0.6
981,374 - Echvi_0859 0.26 +0.8
981,374 - Echvi_0859 0.26 +3.0
981,374 - Echvi_0859 0.26 -1.2
981,390 - Echvi_0859 0.28 -1.1
981,394 + Echvi_0859 0.28 -0.7
981,394 + Echvi_0859 0.28 +1.1
981,395 - Echvi_0859 0.28 +0.2
981,395 - Echvi_0859 0.28 -0.9
981,395 - Echvi_0859 0.28 -1.1
981,395 - Echvi_0859 0.28 +0.4
981,505 + Echvi_0859 0.38 +0.5
981,505 + Echvi_0859 0.38 -1.1
981,506 - Echvi_0859 0.38 +0.1
981,562 - Echvi_0859 0.44 +1.9
981,562 - Echvi_0859 0.44 +1.1
981,562 - Echvi_0859 0.44 +2.1
981,575 + Echvi_0859 0.45 -0.1
981,576 - Echvi_0859 0.45 +0.3
981,610 - Echvi_0859 0.48 -1.0
981,686 - Echvi_0859 0.55 -0.3
981,690 + Echvi_0859 0.55 +0.7
981,690 + Echvi_0859 0.55 -0.9
981,691 - Echvi_0859 0.56 +0.1
981,716 + Echvi_0859 0.58 -0.6
981,727 + Echvi_0859 0.59 +0.6
981,768 + Echvi_0859 0.63 -0.4
981,768 + Echvi_0859 0.63 +0.1
981,768 + Echvi_0859 0.63 -0.4
981,769 - Echvi_0859 0.63 -0.0
981,832 + Echvi_0859 0.69 +0.1
981,885 + Echvi_0859 0.74 -0.4
981,885 + Echvi_0859 0.74 +0.3
981,908 - Echvi_0859 0.76 +0.4
981,935 + Echvi_0859 0.78 -1.0
981,966 + Echvi_0859 0.81 -0.9
982,094 + -1.0
982,094 + -1.6
982,094 + -0.1
982,094 + -1.0
982,098 - -0.8
982,106 - +0.9
982,106 - +1.1
982,109 + -0.4
982,110 - -0.0
982,110 - -1.4
982,142 + -0.0
982,142 + -1.0
982,158 + -1.1
982,158 + -0.2
982,158 + -1.5
982,159 - +0.0
982,159 - -0.0
982,167 + -0.7
982,175 + -0.4
982,176 - +0.6
982,178 + -0.5
982,178 + -1.0
982,178 + -0.9
982,178 + -1.1
982,178 + -0.9
982,178 + -1.9
982,178 + -1.1
982,178 + -1.2
982,178 + -1.3
982,179 - -1.1
982,179 - +0.6
982,179 - -1.1
982,179 - +1.2
982,179 - -1.2
982,179 - +0.3
982,179 - +0.3
982,180 + -0.6
982,181 - -1.2
982,187 - -0.1
982,212 + -0.9
982,213 - -0.2
982,277 + Echvi_0860 0.67 -1.1
982,277 + Echvi_0860 0.67 -0.9
982,277 + Echvi_0860 0.67 -1.1
982,286 + Echvi_0860 0.76 -2.6
982,286 + Echvi_0860 0.76 -0.6
982,286 + Echvi_0860 0.76 -1.0
982,286 + Echvi_0860 0.76 -1.6
982,287 - Echvi_0860 0.77 -0.2
982,287 - Echvi_0860 0.77 +1.1
982,287 - Echvi_0860 0.77 -0.9
982,287 - Echvi_0860 0.77 -1.2
982,288 + Echvi_0860 0.78 -1.5
982,288 + Echvi_0860 0.78 -1.7
982,288 + Echvi_0860 0.78 -1.3
982,288 + Echvi_0860 0.78 -1.0
982,289 - Echvi_0860 0.79 +0.9
982,289 - Echvi_0860 0.79 +0.9
982,305 - -0.1
982,309 + -1.0
982,309 + +0.5
982,309 + +0.5
982,351 + +0.1
982,352 - Echvi_0861 0.10 +0.1
982,353 + Echvi_0861 0.11 +0.1
982,354 - Echvi_0861 0.11 -0.1
982,361 + Echvi_0861 0.16 -2.8
982,361 + Echvi_0861 0.16 -0.3
982,361 + Echvi_0861 0.16 -2.1
982,376 - Echvi_0861 0.26 -0.9
982,376 - Echvi_0861 0.26 -2.4
982,420 + Echvi_0861 0.55 -0.2
982,421 - Echvi_0861 0.56 +0.1
982,430 - Echvi_0861 0.62 +0.0
982,475 + -1.0
982,476 - -1.4
982,519 + +0.6
982,520 - +0.5
982,520 - -0.6
982,531 + -1.5
982,632 - -0.8
982,632 - +1.0
982,637 - -0.9
982,637 - +0.5
982,637 - +0.1
982,777 + Echvi_0862 0.11 +0.3
982,777 + Echvi_0862 0.11 -2.0
982,864 + Echvi_0862 0.19 +0.7
982,944 + Echvi_0862 0.25 -2.5
982,956 - Echvi_0862 0.26 -0.8
982,956 - Echvi_0862 0.26 -0.6
982,956 - Echvi_0862 0.26 +0.7
982,958 + Echvi_0862 0.26 -1.8
982,958 + Echvi_0862 0.26 -1.4
982,963 + Echvi_0862 0.27 -0.8
982,963 + Echvi_0862 0.27 -1.9
982,963 + Echvi_0862 0.27 -2.7
982,963 + Echvi_0862 0.27 -0.8
983,021 + Echvi_0862 0.31 +0.1
983,022 - Echvi_0862 0.31 +1.1
983,052 + Echvi_0862 0.34 -0.3
983,052 + Echvi_0862 0.34 -1.9
983,052 + Echvi_0862 0.34 -0.3
983,052 + Echvi_0862 0.34 -1.6
983,052 + Echvi_0862 0.34 -1.4
983,053 - Echvi_0862 0.34 -0.5
983,128 - Echvi_0862 0.40 +0.0
983,144 + Echvi_0862 0.41 -2.3
983,145 - Echvi_0862 0.41 -0.5
983,145 - Echvi_0862 0.41 -1.1
983,169 - Echvi_0862 0.43 +0.1
983,170 + Echvi_0862 0.43 -2.6
983,170 + Echvi_0862 0.43 -1.8
983,182 + Echvi_0862 0.44 +0.1
983,214 + Echvi_0862 0.47 -1.9
983,215 - Echvi_0862 0.47 -0.2
983,225 + Echvi_0862 0.48 -1.5
983,226 - Echvi_0862 0.48 +0.5
983,226 - Echvi_0862 0.48 +1.5
983,247 + Echvi_0862 0.50 -1.8
983,286 + Echvi_0862 0.53 +1.6
983,286 + Echvi_0862 0.53 -1.5
983,286 + Echvi_0862 0.53 -2.4
983,361 + Echvi_0862 0.59 -0.4
983,361 + Echvi_0862 0.59 -0.7
983,361 + Echvi_0862 0.59 -2.2
983,362 - Echvi_0862 0.59 -0.3
983,385 + Echvi_0862 0.61 -0.3
983,385 + Echvi_0862 0.61 -2.6
983,385 + Echvi_0862 0.61 -1.6
983,386 - Echvi_0862 0.61 +0.2
983,386 - Echvi_0862 0.61 +0.5
983,446 - Echvi_0862 0.66 -0.2
983,485 - Echvi_0862 0.69 +1.7

Or see this region's nucleotide sequence