Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0061

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0060 and Echvi_0061 are separated by 229 nucleotidesEchvi_0061 and Echvi_0062 overlap by 11 nucleotides Echvi_0060: Echvi_0060 - Predicted nucleoside-diphosphate sugar epimerases, at 57,956 to 59,830 _0060 Echvi_0061: Echvi_0061 - Sugar transferases involved in lipopolysaccharide synthesis, at 60,060 to 60,662 _0061 Echvi_0062: Echvi_0062 - Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis, at 60,652 to 61,785 _0062 Position (kb) 60 61Strain fitness (log2 ratio) -2 -1 0 1 2at 59.080 kb on + strand, within Echvi_0060at 59.132 kb on + strand, within Echvi_0060at 59.132 kb on + strand, within Echvi_0060at 59.132 kb on + strand, within Echvi_0060at 59.133 kb on - strand, within Echvi_0060at 59.133 kb on - strand, within Echvi_0060at 59.165 kb on - strand, within Echvi_0060at 59.197 kb on + strand, within Echvi_0060at 59.200 kb on + strand, within Echvi_0060at 59.200 kb on + strand, within Echvi_0060at 59.201 kb on - strand, within Echvi_0060at 59.211 kb on - strand, within Echvi_0060at 59.408 kb on - strand, within Echvi_0060at 59.408 kb on - strand, within Echvi_0060at 59.408 kb on - strand, within Echvi_0060at 59.408 kb on - strand, within Echvi_0060at 59.437 kb on - strand, within Echvi_0060at 59.446 kb on - strand, within Echvi_0060at 59.472 kb on - strand, within Echvi_0060at 59.504 kb on + strand, within Echvi_0060at 59.504 kb on + strand, within Echvi_0060at 59.504 kb on + strand, within Echvi_0060at 59.540 kb on + strand, within Echvi_0060at 59.584 kb on + strand, within Echvi_0060at 59.584 kb on + strand, within Echvi_0060at 59.584 kb on + strand, within Echvi_0060at 59.585 kb on - strand, within Echvi_0060at 59.585 kb on - strand, within Echvi_0060at 59.585 kb on - strand, within Echvi_0060at 59.585 kb on - strand, within Echvi_0060at 59.627 kb on + strand, within Echvi_0060at 59.682 kb on - strandat 59.682 kb on - strandat 59.734 kb on + strandat 59.767 kb on - strandat 59.789 kb on + strandat 59.832 kb on - strandat 59.835 kb on - strandat 59.935 kb on + strandat 59.935 kb on + strandat 59.936 kb on - strandat 60.009 kb on - strandat 60.029 kb on + strandat 60.045 kb on + strandat 60.061 kb on + strandat 60.061 kb on + strandat 60.062 kb on - strandat 60.084 kb on + strandat 60.085 kb on - strandat 60.085 kb on - strandat 60.085 kb on - strandat 60.085 kb on - strandat 60.085 kb on - strandat 60.088 kb on + strandat 60.088 kb on + strandat 60.088 kb on + strandat 60.088 kb on + strandat 60.089 kb on - strandat 60.089 kb on - strandat 60.089 kb on - strandat 60.165 kb on - strand, within Echvi_0061at 60.172 kb on - strand, within Echvi_0061at 60.184 kb on + strand, within Echvi_0061at 60.185 kb on - strand, within Echvi_0061at 60.185 kb on - strand, within Echvi_0061at 60.185 kb on - strand, within Echvi_0061at 60.185 kb on - strand, within Echvi_0061at 60.238 kb on - strand, within Echvi_0061at 60.238 kb on - strand, within Echvi_0061at 60.298 kb on + strand, within Echvi_0061at 60.298 kb on + strand, within Echvi_0061at 60.310 kb on + strand, within Echvi_0061at 60.311 kb on - strand, within Echvi_0061at 60.411 kb on - strand, within Echvi_0061at 60.465 kb on + strand, within Echvi_0061at 60.466 kb on - strand, within Echvi_0061at 60.484 kb on - strand, within Echvi_0061at 60.484 kb on - strand, within Echvi_0061at 60.525 kb on - strand, within Echvi_0061at 60.567 kb on + strand, within Echvi_0061at 60.567 kb on + strand, within Echvi_0061at 60.568 kb on - strand, within Echvi_0061at 60.568 kb on - strand, within Echvi_0061at 60.586 kb on - strand, within Echvi_0061at 60.589 kb on - strand, within Echvi_0061at 60.595 kb on - strand, within Echvi_0061at 60.595 kb on - strand, within Echvi_0061at 60.595 kb on - strand, within Echvi_0061at 60.605 kb on + strandat 60.605 kb on + strandat 60.606 kb on - strandat 60.646 kb on - strandat 60.653 kb on + strandat 60.653 kb on + strandat 60.654 kb on - strandat 60.654 kb on - strandat 60.658 kb on + strandat 60.688 kb on + strandat 60.688 kb on + strandat 60.692 kb on - strandat 60.692 kb on - strandat 60.722 kb on + strandat 60.723 kb on - strandat 60.746 kb on - strandat 60.767 kb on + strand, within Echvi_0062at 60.791 kb on + strand, within Echvi_0062at 60.792 kb on - strand, within Echvi_0062at 60.795 kb on - strand, within Echvi_0062at 60.821 kb on - strand, within Echvi_0062at 60.829 kb on - strand, within Echvi_0062at 60.855 kb on + strand, within Echvi_0062at 60.912 kb on + strand, within Echvi_0062at 60.912 kb on + strand, within Echvi_0062at 60.912 kb on + strand, within Echvi_0062at 60.933 kb on + strand, within Echvi_0062at 60.952 kb on - strand, within Echvi_0062at 60.967 kb on + strand, within Echvi_0062at 61.036 kb on + strand, within Echvi_0062at 61.053 kb on + strand, within Echvi_0062at 61.060 kb on + strand, within Echvi_0062at 61.060 kb on + strand, within Echvi_0062at 61.060 kb on + strand, within Echvi_0062at 61.060 kb on + strand, within Echvi_0062at 61.060 kb on + strand, within Echvi_0062at 61.060 kb on + strand, within Echvi_0062at 61.061 kb on - strand, within Echvi_0062at 61.061 kb on - strand, within Echvi_0062at 61.061 kb on - strand, within Echvi_0062at 61.061 kb on - strand, within Echvi_0062at 61.061 kb on - strand, within Echvi_0062at 61.061 kb on - strand, within Echvi_0062at 61.061 kb on - strand, within Echvi_0062at 61.061 kb on - strand, within Echvi_0062at 61.064 kb on - strand, within Echvi_0062at 61.080 kb on + strand, within Echvi_0062at 61.092 kb on + strand, within Echvi_0062at 61.092 kb on + strand, within Echvi_0062at 61.093 kb on - strand, within Echvi_0062at 61.093 kb on - strand, within Echvi_0062at 61.093 kb on - strand, within Echvi_0062at 61.093 kb on - strand, within Echvi_0062at 61.093 kb on - strand, within Echvi_0062at 61.093 kb on - strand, within Echvi_0062at 61.108 kb on - strand, within Echvi_0062at 61.108 kb on - strand, within Echvi_0062at 61.116 kb on - strand, within Echvi_0062at 61.142 kb on - strand, within Echvi_0062at 61.183 kb on - strand, within Echvi_0062at 61.238 kb on + strand, within Echvi_0062at 61.279 kb on + strand, within Echvi_0062at 61.280 kb on - strand, within Echvi_0062at 61.329 kb on - strand, within Echvi_0062at 61.331 kb on + strand, within Echvi_0062at 61.391 kb on - strand, within Echvi_0062at 61.500 kb on + strand, within Echvi_0062at 61.625 kb on + strand, within Echvi_0062at 61.626 kb on - strand, within Echvi_0062at 61.635 kb on + strand, within Echvi_0062at 61.651 kb on - strand, within Echvi_0062at 61.651 kb on - strand, within Echvi_0062at 61.651 kb on - strand, within Echvi_0062

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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59,080 + Echvi_0060 0.60 -0.3
59,132 + Echvi_0060 0.63 -0.7
59,132 + Echvi_0060 0.63 +0.5
59,132 + Echvi_0060 0.63 -0.5
59,133 - Echvi_0060 0.63 +1.0
59,133 - Echvi_0060 0.63 +1.0
59,165 - Echvi_0060 0.64 -0.5
59,197 + Echvi_0060 0.66 +0.9
59,200 + Echvi_0060 0.66 -1.9
59,200 + Echvi_0060 0.66 -0.3
59,201 - Echvi_0060 0.66 +0.2
59,211 - Echvi_0060 0.67 +1.3
59,408 - Echvi_0060 0.77 +0.5
59,408 - Echvi_0060 0.77 -1.7
59,408 - Echvi_0060 0.77 +0.7
59,408 - Echvi_0060 0.77 +0.4
59,437 - Echvi_0060 0.79 -0.3
59,446 - Echvi_0060 0.79 +2.1
59,472 - Echvi_0060 0.81 -0.5
59,504 + Echvi_0060 0.83 -0.9
59,504 + Echvi_0060 0.83 +0.2
59,504 + Echvi_0060 0.83 +0.5
59,540 + Echvi_0060 0.84 -0.1
59,584 + Echvi_0060 0.87 +0.3
59,584 + Echvi_0060 0.87 +1.5
59,584 + Echvi_0060 0.87 -0.9
59,585 - Echvi_0060 0.87 +1.3
59,585 - Echvi_0060 0.87 +0.2
59,585 - Echvi_0060 0.87 -0.3
59,585 - Echvi_0060 0.87 -0.2
59,627 + Echvi_0060 0.89 -0.1
59,682 - +0.0
59,682 - +0.6
59,734 + -0.6
59,767 - +0.6
59,789 + -0.6
59,832 - +0.6
59,835 - +0.4
59,935 + +0.1
59,935 + +0.9
59,936 - -0.7
60,009 - +0.4
60,029 + +0.0
60,045 + -0.1
60,061 + +0.4
60,061 + -1.2
60,062 - +0.5
60,084 + +1.5
60,085 - -0.5
60,085 - -1.0
60,085 - +0.0
60,085 - -1.2
60,085 - +1.5
60,088 + -0.6
60,088 + +1.4
60,088 + -0.3
60,088 + -1.4
60,089 - +0.2
60,089 - +0.2
60,089 - -0.1
60,165 - Echvi_0061 0.17 +1.7
60,172 - Echvi_0061 0.19 +1.7
60,184 + Echvi_0061 0.21 +0.9
60,185 - Echvi_0061 0.21 +0.1
60,185 - Echvi_0061 0.21 +0.2
60,185 - Echvi_0061 0.21 +0.4
60,185 - Echvi_0061 0.21 +0.8
60,238 - Echvi_0061 0.30 -0.3
60,238 - Echvi_0061 0.30 +0.1
60,298 + Echvi_0061 0.39 +1.0
60,298 + Echvi_0061 0.39 -0.6
60,310 + Echvi_0061 0.41 -0.8
60,311 - Echvi_0061 0.42 +0.3
60,411 - Echvi_0061 0.58 -0.1
60,465 + Echvi_0061 0.67 +0.3
60,466 - Echvi_0061 0.67 +0.6
60,484 - Echvi_0061 0.70 +1.0
60,484 - Echvi_0061 0.70 +0.3
60,525 - Echvi_0061 0.77 +0.0
60,567 + Echvi_0061 0.84 -1.0
60,567 + Echvi_0061 0.84 +1.4
60,568 - Echvi_0061 0.84 -0.2
60,568 - Echvi_0061 0.84 +1.2
60,586 - Echvi_0061 0.87 -0.6
60,589 - Echvi_0061 0.88 +1.7
60,595 - Echvi_0061 0.89 -2.5
60,595 - Echvi_0061 0.89 -0.2
60,595 - Echvi_0061 0.89 -0.2
60,605 + +1.3
60,605 + -0.8
60,606 - -0.3
60,646 - +1.1
60,653 + +0.2
60,653 + -0.3
60,654 - -1.1
60,654 - +0.0
60,658 + +0.7
60,688 + +0.5
60,688 + -1.0
60,692 - +0.2
60,692 - -0.1
60,722 + -0.0
60,723 - -0.6
60,746 - +2.7
60,767 + Echvi_0062 0.10 +0.2
60,791 + Echvi_0062 0.12 +0.7
60,792 - Echvi_0062 0.12 -1.4
60,795 - Echvi_0062 0.13 -0.3
60,821 - Echvi_0062 0.15 +1.2
60,829 - Echvi_0062 0.16 +1.6
60,855 + Echvi_0062 0.18 +0.2
60,912 + Echvi_0062 0.23 +0.2
60,912 + Echvi_0062 0.23 +0.5
60,912 + Echvi_0062 0.23 +1.2
60,933 + Echvi_0062 0.25 +0.1
60,952 - Echvi_0062 0.26 -0.3
60,967 + Echvi_0062 0.28 +0.8
61,036 + Echvi_0062 0.34 -0.6
61,053 + Echvi_0062 0.35 -0.3
61,060 + Echvi_0062 0.36 -0.7
61,060 + Echvi_0062 0.36 +0.5
61,060 + Echvi_0062 0.36 -1.7
61,060 + Echvi_0062 0.36 +0.2
61,060 + Echvi_0062 0.36 +0.9
61,060 + Echvi_0062 0.36 +0.6
61,061 - Echvi_0062 0.36 -0.1
61,061 - Echvi_0062 0.36 -0.3
61,061 - Echvi_0062 0.36 -1.2
61,061 - Echvi_0062 0.36 -0.9
61,061 - Echvi_0062 0.36 -0.3
61,061 - Echvi_0062 0.36 +0.3
61,061 - Echvi_0062 0.36 +0.5
61,061 - Echvi_0062 0.36 +0.2
61,064 - Echvi_0062 0.36 -0.3
61,080 + Echvi_0062 0.38 -0.1
61,092 + Echvi_0062 0.39 +0.0
61,092 + Echvi_0062 0.39 +0.6
61,093 - Echvi_0062 0.39 +1.2
61,093 - Echvi_0062 0.39 +0.1
61,093 - Echvi_0062 0.39 +0.6
61,093 - Echvi_0062 0.39 +0.9
61,093 - Echvi_0062 0.39 -0.7
61,093 - Echvi_0062 0.39 +0.2
61,108 - Echvi_0062 0.40 -1.9
61,108 - Echvi_0062 0.40 +0.7
61,116 - Echvi_0062 0.41 -0.3
61,142 - Echvi_0062 0.43 -1.6
61,183 - Echvi_0062 0.47 +1.1
61,238 + Echvi_0062 0.52 +0.5
61,279 + Echvi_0062 0.55 -0.1
61,280 - Echvi_0062 0.55 +0.2
61,329 - Echvi_0062 0.60 +0.7
61,331 + Echvi_0062 0.60 -1.2
61,391 - Echvi_0062 0.65 +0.2
61,500 + Echvi_0062 0.75 +1.3
61,625 + Echvi_0062 0.86 -0.3
61,626 - Echvi_0062 0.86 +0.5
61,635 + Echvi_0062 0.87 +0.5
61,651 - Echvi_0062 0.88 -0.1
61,651 - Echvi_0062 0.88 -0.1
61,651 - Echvi_0062 0.88 +0.6

Or see this region's nucleotide sequence