Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_20180

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_20175 and CA264_20180 are separated by 5 nucleotidesCA264_20180 and CA264_20185 are separated by 1 nucleotidesCA264_20185 and CA264_20190 overlap by 14 nucleotides CA264_20175: CA264_20175 - hypothetical protein, at 4,656,614 to 4,658,299 _20175 CA264_20180: CA264_20180 - phospholipid carrier-dependent glycosyltransferase, at 4,658,305 to 4,659,939 _20180 CA264_20185: CA264_20185 - lauroyl acyltransferase, at 4,659,941 to 4,660,600 _20185 CA264_20190: CA264_20190 - dolichol-phosphate mannosyltransferase, at 4,660,587 to 4,661,330 _20190 Position (kb) 4658 4659 4660Strain fitness (log2 ratio) -2 -1 0 1 2at 4657.326 kb on - strand, within CA264_20175at 4657.353 kb on - strand, within CA264_20175at 4657.353 kb on - strand, within CA264_20175at 4657.359 kb on - strand, within CA264_20175at 4657.359 kb on - strand, within CA264_20175at 4657.359 kb on - strand, within CA264_20175at 4657.360 kb on + strand, within CA264_20175at 4657.360 kb on + strand, within CA264_20175at 4657.361 kb on - strand, within CA264_20175at 4657.376 kb on + strand, within CA264_20175at 4657.376 kb on - strand, within CA264_20175at 4657.377 kb on - strand, within CA264_20175at 4657.380 kb on + strand, within CA264_20175at 4657.380 kb on + strand, within CA264_20175at 4657.381 kb on - strand, within CA264_20175at 4657.384 kb on + strand, within CA264_20175at 4657.385 kb on - strand, within CA264_20175at 4657.404 kb on + strand, within CA264_20175at 4657.405 kb on - strand, within CA264_20175at 4657.429 kb on + strand, within CA264_20175at 4657.474 kb on - strand, within CA264_20175at 4657.487 kb on + strand, within CA264_20175at 4657.577 kb on + strand, within CA264_20175at 4657.606 kb on + strand, within CA264_20175at 4657.610 kb on + strand, within CA264_20175at 4657.611 kb on - strand, within CA264_20175at 4657.656 kb on + strand, within CA264_20175at 4657.662 kb on + strand, within CA264_20175at 4657.662 kb on + strand, within CA264_20175at 4657.662 kb on + strand, within CA264_20175at 4657.663 kb on - strand, within CA264_20175at 4657.756 kb on + strand, within CA264_20175at 4657.756 kb on + strand, within CA264_20175at 4657.757 kb on - strand, within CA264_20175at 4657.757 kb on - strand, within CA264_20175at 4657.759 kb on + strand, within CA264_20175at 4657.759 kb on + strand, within CA264_20175at 4657.759 kb on + strand, within CA264_20175at 4657.761 kb on + strand, within CA264_20175at 4657.761 kb on + strand, within CA264_20175at 4657.761 kb on + strand, within CA264_20175at 4657.762 kb on - strand, within CA264_20175at 4657.762 kb on - strand, within CA264_20175at 4657.822 kb on + strand, within CA264_20175at 4657.823 kb on - strand, within CA264_20175at 4657.830 kb on + strand, within CA264_20175at 4657.831 kb on - strand, within CA264_20175at 4658.138 kb on - strandat 4658.191 kb on - strandat 4658.231 kb on - strandat 4658.231 kb on - strandat 4658.237 kb on - strandat 4658.285 kb on - strandat 4658.306 kb on + strandat 4658.306 kb on + strandat 4658.309 kb on + strandat 4658.456 kb on - strandat 4658.456 kb on - strandat 4658.541 kb on + strand, within CA264_20180at 4658.542 kb on - strand, within CA264_20180at 4658.588 kb on + strand, within CA264_20180at 4658.590 kb on + strand, within CA264_20180at 4658.639 kb on - strand, within CA264_20180at 4658.656 kb on + strand, within CA264_20180at 4658.694 kb on - strand, within CA264_20180at 4658.694 kb on - strand, within CA264_20180at 4658.716 kb on + strand, within CA264_20180at 4658.743 kb on - strand, within CA264_20180at 4658.752 kb on + strand, within CA264_20180at 4658.753 kb on - strand, within CA264_20180at 4658.776 kb on - strand, within CA264_20180at 4658.861 kb on - strand, within CA264_20180at 4658.861 kb on - strand, within CA264_20180at 4658.872 kb on + strand, within CA264_20180at 4658.873 kb on - strand, within CA264_20180at 4658.885 kb on + strand, within CA264_20180at 4658.902 kb on + strand, within CA264_20180at 4658.974 kb on + strand, within CA264_20180at 4658.975 kb on - strand, within CA264_20180at 4658.987 kb on + strand, within CA264_20180at 4658.987 kb on + strand, within CA264_20180at 4659.046 kb on + strand, within CA264_20180at 4659.046 kb on + strand, within CA264_20180at 4659.046 kb on + strand, within CA264_20180at 4659.047 kb on - strand, within CA264_20180at 4659.049 kb on - strand, within CA264_20180at 4659.149 kb on + strand, within CA264_20180at 4659.213 kb on + strand, within CA264_20180at 4659.225 kb on - strand, within CA264_20180at 4659.258 kb on - strand, within CA264_20180at 4659.282 kb on + strand, within CA264_20180at 4659.354 kb on - strand, within CA264_20180at 4659.428 kb on + strand, within CA264_20180at 4659.428 kb on + strand, within CA264_20180at 4659.437 kb on + strand, within CA264_20180at 4659.439 kb on + strand, within CA264_20180at 4659.460 kb on + strand, within CA264_20180at 4659.460 kb on + strand, within CA264_20180at 4659.465 kb on + strand, within CA264_20180at 4659.466 kb on - strand, within CA264_20180at 4659.466 kb on - strand, within CA264_20180at 4659.466 kb on - strand, within CA264_20180at 4659.548 kb on - strand, within CA264_20180at 4659.562 kb on - strand, within CA264_20180at 4659.566 kb on + strand, within CA264_20180at 4659.654 kb on + strand, within CA264_20180at 4659.655 kb on + strand, within CA264_20180at 4659.697 kb on + strand, within CA264_20180at 4659.698 kb on - strand, within CA264_20180at 4659.729 kb on + strand, within CA264_20180at 4659.742 kb on - strand, within CA264_20180at 4659.790 kb on + strandat 4659.791 kb on - strandat 4659.861 kb on + strandat 4659.861 kb on + strandat 4659.863 kb on + strandat 4659.863 kb on + strandat 4659.864 kb on - strandat 4659.864 kb on - strandat 4659.864 kb on - strandat 4659.871 kb on + strandat 4659.883 kb on + strandat 4659.883 kb on + strandat 4659.917 kb on + strandat 4659.919 kb on + strandat 4659.919 kb on + strandat 4659.939 kb on + strandat 4659.940 kb on - strandat 4659.951 kb on + strandat 4659.996 kb on - strandat 4660.071 kb on + strand, within CA264_20185at 4660.071 kb on + strand, within CA264_20185at 4660.102 kb on + strand, within CA264_20185at 4660.102 kb on + strand, within CA264_20185at 4660.102 kb on + strand, within CA264_20185at 4660.231 kb on + strand, within CA264_20185at 4660.246 kb on + strand, within CA264_20185at 4660.248 kb on + strand, within CA264_20185at 4660.260 kb on + strand, within CA264_20185at 4660.260 kb on + strand, within CA264_20185at 4660.261 kb on - strand, within CA264_20185at 4660.261 kb on - strand, within CA264_20185at 4660.261 kb on - strand, within CA264_20185at 4660.261 kb on - strand, within CA264_20185at 4660.264 kb on + strand, within CA264_20185at 4660.265 kb on - strand, within CA264_20185at 4660.378 kb on + strand, within CA264_20185at 4660.383 kb on + strand, within CA264_20185at 4660.384 kb on - strand, within CA264_20185at 4660.384 kb on - strand, within CA264_20185at 4660.384 kb on - strand, within CA264_20185at 4660.435 kb on - strand, within CA264_20185at 4660.460 kb on + strand, within CA264_20185at 4660.463 kb on - strand, within CA264_20185at 4660.463 kb on - strand, within CA264_20185at 4660.463 kb on - strand, within CA264_20185at 4660.465 kb on + strand, within CA264_20185at 4660.465 kb on + strand, within CA264_20185at 4660.465 kb on + strand, within CA264_20185at 4660.466 kb on - strand, within CA264_20185at 4660.575 kb on + strandat 4660.576 kb on - strandat 4660.576 kb on - strandat 4660.577 kb on + strandat 4660.577 kb on + strandat 4660.578 kb on - strandat 4660.578 kb on - strandat 4660.592 kb on + strandat 4660.593 kb on - strandat 4660.644 kb on + strandat 4660.644 kb on + strandat 4660.644 kb on + strandat 4660.644 kb on + strandat 4660.645 kb on - strandat 4660.645 kb on - strandat 4660.645 kb on - strandat 4660.645 kb on - strandat 4660.645 kb on - strandat 4660.647 kb on - strandat 4660.649 kb on - strandat 4660.668 kb on - strand, within CA264_20190at 4660.679 kb on + strand, within CA264_20190at 4660.680 kb on - strand, within CA264_20190at 4660.858 kb on - strand, within CA264_20190at 4660.901 kb on + strand, within CA264_20190at 4660.902 kb on - strand, within CA264_20190at 4660.902 kb on - strand, within CA264_20190at 4660.902 kb on - strand, within CA264_20190

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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4,657,326 - CA264_20175 0.42 +0.0
4,657,353 - CA264_20175 0.44 +1.2
4,657,353 - CA264_20175 0.44 -1.9
4,657,359 - CA264_20175 0.44 +1.0
4,657,359 - CA264_20175 0.44 -0.3
4,657,359 - CA264_20175 0.44 +0.0
4,657,360 + CA264_20175 0.44 -0.8
4,657,360 + CA264_20175 0.44 -1.0
4,657,361 - CA264_20175 0.44 -0.5
4,657,376 + CA264_20175 0.45 +0.6
4,657,376 - CA264_20175 0.45 -1.0
4,657,377 - CA264_20175 0.45 -0.4
4,657,380 + CA264_20175 0.45 -0.2
4,657,380 + CA264_20175 0.45 +0.3
4,657,381 - CA264_20175 0.45 -0.8
4,657,384 + CA264_20175 0.46 +1.6
4,657,385 - CA264_20175 0.46 +0.4
4,657,404 + CA264_20175 0.47 +0.1
4,657,405 - CA264_20175 0.47 +0.2
4,657,429 + CA264_20175 0.48 +0.1
4,657,474 - CA264_20175 0.51 -0.4
4,657,487 + CA264_20175 0.52 +0.0
4,657,577 + CA264_20175 0.57 +0.1
4,657,606 + CA264_20175 0.59 -0.4
4,657,610 + CA264_20175 0.59 +1.4
4,657,611 - CA264_20175 0.59 +1.1
4,657,656 + CA264_20175 0.62 +0.3
4,657,662 + CA264_20175 0.62 +1.1
4,657,662 + CA264_20175 0.62 +0.5
4,657,662 + CA264_20175 0.62 +1.2
4,657,663 - CA264_20175 0.62 -0.6
4,657,756 + CA264_20175 0.68 +0.7
4,657,756 + CA264_20175 0.68 -0.4
4,657,757 - CA264_20175 0.68 +1.4
4,657,757 - CA264_20175 0.68 +0.2
4,657,759 + CA264_20175 0.68 -0.2
4,657,759 + CA264_20175 0.68 +1.7
4,657,759 + CA264_20175 0.68 -0.2
4,657,761 + CA264_20175 0.68 +0.8
4,657,761 + CA264_20175 0.68 -0.7
4,657,761 + CA264_20175 0.68 -1.8
4,657,762 - CA264_20175 0.68 +0.7
4,657,762 - CA264_20175 0.68 -0.7
4,657,822 + CA264_20175 0.72 +0.7
4,657,823 - CA264_20175 0.72 +0.8
4,657,830 + CA264_20175 0.72 +0.5
4,657,831 - CA264_20175 0.72 +0.4
4,658,138 - -0.5
4,658,191 - -0.2
4,658,231 - +0.9
4,658,231 - -0.2
4,658,237 - -0.7
4,658,285 - +0.0
4,658,306 + -0.4
4,658,306 + +1.8
4,658,309 + +0.2
4,658,456 - -0.1
4,658,456 - +0.4
4,658,541 + CA264_20180 0.14 +0.4
4,658,542 - CA264_20180 0.14 -0.7
4,658,588 + CA264_20180 0.17 +0.9
4,658,590 + CA264_20180 0.17 +0.9
4,658,639 - CA264_20180 0.20 -0.4
4,658,656 + CA264_20180 0.21 -0.9
4,658,694 - CA264_20180 0.24 -0.5
4,658,694 - CA264_20180 0.24 +0.2
4,658,716 + CA264_20180 0.25 +0.3
4,658,743 - CA264_20180 0.27 +0.1
4,658,752 + CA264_20180 0.27 -0.9
4,658,753 - CA264_20180 0.27 -1.2
4,658,776 - CA264_20180 0.29 -1.4
4,658,861 - CA264_20180 0.34 -0.1
4,658,861 - CA264_20180 0.34 -0.5
4,658,872 + CA264_20180 0.35 +0.7
4,658,873 - CA264_20180 0.35 +1.1
4,658,885 + CA264_20180 0.35 +0.2
4,658,902 + CA264_20180 0.37 +0.9
4,658,974 + CA264_20180 0.41 -0.9
4,658,975 - CA264_20180 0.41 +0.9
4,658,987 + CA264_20180 0.42 -0.1
4,658,987 + CA264_20180 0.42 -2.4
4,659,046 + CA264_20180 0.45 +0.4
4,659,046 + CA264_20180 0.45 -0.1
4,659,046 + CA264_20180 0.45 +0.4
4,659,047 - CA264_20180 0.45 -0.4
4,659,049 - CA264_20180 0.46 +0.1
4,659,149 + CA264_20180 0.52 -1.8
4,659,213 + CA264_20180 0.56 -1.1
4,659,225 - CA264_20180 0.56 -0.1
4,659,258 - CA264_20180 0.58 -0.1
4,659,282 + CA264_20180 0.60 +0.6
4,659,354 - CA264_20180 0.64 -0.7
4,659,428 + CA264_20180 0.69 -0.2
4,659,428 + CA264_20180 0.69 +1.0
4,659,437 + CA264_20180 0.69 +0.6
4,659,439 + CA264_20180 0.69 +0.8
4,659,460 + CA264_20180 0.71 +1.6
4,659,460 + CA264_20180 0.71 +0.5
4,659,465 + CA264_20180 0.71 -1.2
4,659,466 - CA264_20180 0.71 +0.9
4,659,466 - CA264_20180 0.71 -1.1
4,659,466 - CA264_20180 0.71 +0.0
4,659,548 - CA264_20180 0.76 +0.1
4,659,562 - CA264_20180 0.77 -0.2
4,659,566 + CA264_20180 0.77 -0.5
4,659,654 + CA264_20180 0.83 +1.6
4,659,655 + CA264_20180 0.83 -0.1
4,659,697 + CA264_20180 0.85 +0.6
4,659,698 - CA264_20180 0.85 +0.1
4,659,729 + CA264_20180 0.87 -0.0
4,659,742 - CA264_20180 0.88 -0.7
4,659,790 + +0.6
4,659,791 - -0.9
4,659,861 + -0.1
4,659,861 + +0.2
4,659,863 + +0.8
4,659,863 + +0.0
4,659,864 - -0.4
4,659,864 - -0.9
4,659,864 - -0.3
4,659,871 + +0.8
4,659,883 + -1.0
4,659,883 + -1.0
4,659,917 + -0.1
4,659,919 + +0.5
4,659,919 + -0.6
4,659,939 + -0.3
4,659,940 - +0.4
4,659,951 + -0.3
4,659,996 - -0.1
4,660,071 + CA264_20185 0.20 +1.3
4,660,071 + CA264_20185 0.20 +0.0
4,660,102 + CA264_20185 0.24 +0.4
4,660,102 + CA264_20185 0.24 +0.3
4,660,102 + CA264_20185 0.24 +0.2
4,660,231 + CA264_20185 0.44 +1.0
4,660,246 + CA264_20185 0.46 +0.0
4,660,248 + CA264_20185 0.47 -0.1
4,660,260 + CA264_20185 0.48 -0.5
4,660,260 + CA264_20185 0.48 +0.9
4,660,261 - CA264_20185 0.48 -0.5
4,660,261 - CA264_20185 0.48 -0.5
4,660,261 - CA264_20185 0.48 +0.1
4,660,261 - CA264_20185 0.48 +0.0
4,660,264 + CA264_20185 0.49 -1.5
4,660,265 - CA264_20185 0.49 +0.7
4,660,378 + CA264_20185 0.66 -0.8
4,660,383 + CA264_20185 0.67 -0.1
4,660,384 - CA264_20185 0.67 -0.5
4,660,384 - CA264_20185 0.67 +1.6
4,660,384 - CA264_20185 0.67 +0.7
4,660,435 - CA264_20185 0.75 -0.0
4,660,460 + CA264_20185 0.79 +0.6
4,660,463 - CA264_20185 0.79 +0.0
4,660,463 - CA264_20185 0.79 +0.2
4,660,463 - CA264_20185 0.79 -1.1
4,660,465 + CA264_20185 0.79 +0.3
4,660,465 + CA264_20185 0.79 +0.1
4,660,465 + CA264_20185 0.79 +0.1
4,660,466 - CA264_20185 0.80 -0.3
4,660,575 + -1.2
4,660,576 - +0.2
4,660,576 - -0.5
4,660,577 + +0.2
4,660,577 + +1.5
4,660,578 - -0.8
4,660,578 - +0.7
4,660,592 + -0.8
4,660,593 - -0.4
4,660,644 + -0.1
4,660,644 + -0.5
4,660,644 + -0.3
4,660,644 + +0.5
4,660,645 - +0.3
4,660,645 - -0.2
4,660,645 - -0.9
4,660,645 - +0.6
4,660,645 - -0.1
4,660,647 - -0.9
4,660,649 - -1.0
4,660,668 - CA264_20190 0.11 -0.4
4,660,679 + CA264_20190 0.12 +1.4
4,660,680 - CA264_20190 0.12 +0.0
4,660,858 - CA264_20190 0.36 +0.2
4,660,901 + CA264_20190 0.42 -0.5
4,660,902 - CA264_20190 0.42 -1.2
4,660,902 - CA264_20190 0.42 +2.2
4,660,902 - CA264_20190 0.42 +0.5

Or see this region's nucleotide sequence