Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_13365 and CA264_13370 are separated by 3 nucleotides CA264_13370 and CA264_13375 are separated by 307 nucleotides CA264_13375 and CA264_13380 are separated by 21 nucleotides CA264_13380 and CA264_13385 are separated by 128 nucleotides
CA264_13365: CA264_13365 - molecular chaperone DnaJ, at 3,117,105 to 3,118,256
_13365
CA264_13370: CA264_13370 - nucleotide exchange factor GrpE, at 3,118,260 to 3,118,826
_13370
CA264_13375: CA264_13375 - GTPase Obg, at 3,119,134 to 3,120,126
_13375
CA264_13380: CA264_13380 - adenylate kinase, at 3,120,148 to 3,120,744
_13380
CA264_13385: CA264_13385 - hypoxanthine phosphoribosyltransferase, at 3,120,873 to 3,121,415
_13385
Position (kb)
3119
3120
3121 Strain fitness (log2 ratio)
-2
-1
0
1 at 3118.261 kb on + strand at 3118.270 kb on - strand at 3118.826 kb on + strand at 3118.827 kb on - strand at 3118.858 kb on - strand at 3119.020 kb on - strand at 3119.078 kb on - strand at 3119.114 kb on + strand at 3119.114 kb on + strand at 3120.772 kb on + strand at 3120.772 kb on + strand at 3120.773 kb on - strand at 3120.775 kb on - strand at 3120.775 kb on - strand at 3120.775 kb on - strand at 3120.780 kb on + strand at 3120.780 kb on + strand at 3120.791 kb on + strand at 3120.823 kb on - strand at 3120.922 kb on + strand at 3120.974 kb on - strand, within CA264_13385 at 3120.974 kb on - strand, within CA264_13385 at 3120.985 kb on - strand, within CA264_13385 at 3121.065 kb on + strand, within CA264_13385 at 3121.066 kb on - strand, within CA264_13385
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 3,118,261 + -0.1 3,118,270 - -2.7 3,118,826 + -0.6 3,118,827 - -0.4 3,118,858 - -0.7 3,119,020 - -1.6 3,119,078 - +1.2 3,119,114 + +1.0 3,119,114 + -1.1 3,120,772 + +0.2 3,120,772 + +0.0 3,120,773 - -0.2 3,120,775 - -1.2 3,120,775 - -0.7 3,120,775 - -0.2 3,120,780 + +0.5 3,120,780 + +0.3 3,120,791 + -0.1 3,120,823 - -1.1 3,120,922 + -0.6 3,120,974 - CA264_13385 0.19 -1.2 3,120,974 - CA264_13385 0.19 -0.2 3,120,985 - CA264_13385 0.21 -0.5 3,121,065 + CA264_13385 0.35 -0.0 3,121,066 - CA264_13385 0.36 -1.1
Or see this region's nucleotide sequence