Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13375

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_13365 and CA264_13370 are separated by 3 nucleotidesCA264_13370 and CA264_13375 are separated by 307 nucleotidesCA264_13375 and CA264_13380 are separated by 21 nucleotidesCA264_13380 and CA264_13385 are separated by 128 nucleotides CA264_13365: CA264_13365 - molecular chaperone DnaJ, at 3,117,105 to 3,118,256 _13365 CA264_13370: CA264_13370 - nucleotide exchange factor GrpE, at 3,118,260 to 3,118,826 _13370 CA264_13375: CA264_13375 - GTPase Obg, at 3,119,134 to 3,120,126 _13375 CA264_13380: CA264_13380 - adenylate kinase, at 3,120,148 to 3,120,744 _13380 CA264_13385: CA264_13385 - hypoxanthine phosphoribosyltransferase, at 3,120,873 to 3,121,415 _13385 Position (kb) 3119 3120 3121Strain fitness (log2 ratio) -2 -1 0 1at 3118.261 kb on + strandat 3118.270 kb on - strandat 3118.826 kb on + strandat 3118.827 kb on - strandat 3118.858 kb on - strandat 3119.020 kb on - strandat 3119.078 kb on - strandat 3119.114 kb on + strandat 3119.114 kb on + strandat 3120.772 kb on + strandat 3120.772 kb on + strandat 3120.773 kb on - strandat 3120.775 kb on - strandat 3120.775 kb on - strandat 3120.775 kb on - strandat 3120.780 kb on + strandat 3120.780 kb on + strandat 3120.791 kb on + strandat 3120.823 kb on - strandat 3120.922 kb on + strandat 3120.974 kb on - strand, within CA264_13385at 3120.974 kb on - strand, within CA264_13385at 3120.985 kb on - strand, within CA264_13385at 3121.065 kb on + strand, within CA264_13385at 3121.066 kb on - strand, within CA264_13385

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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3,118,261 + -0.1
3,118,270 - -2.7
3,118,826 + -0.6
3,118,827 - -0.4
3,118,858 - -0.7
3,119,020 - -1.6
3,119,078 - +1.2
3,119,114 + +1.0
3,119,114 + -1.1
3,120,772 + +0.2
3,120,772 + +0.0
3,120,773 - -0.2
3,120,775 - -1.2
3,120,775 - -0.7
3,120,775 - -0.2
3,120,780 + +0.5
3,120,780 + +0.3
3,120,791 + -0.1
3,120,823 - -1.1
3,120,922 + -0.6
3,120,974 - CA264_13385 0.19 -1.2
3,120,974 - CA264_13385 0.19 -0.2
3,120,985 - CA264_13385 0.21 -0.5
3,121,065 + CA264_13385 0.35 -0.0
3,121,066 - CA264_13385 0.36 -1.1

Or see this region's nucleotide sequence