Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_12880

Experiment: marine broth

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine broth
3,000,164	+				-0.5
3,000,172	+				+0.3
3,000,191	+				-0.5
3,000,218	+				-0.2
3,000,218	+				-0.4
3,000,219	-				+0.4
3,000,219	-				+1.0
3,000,219	-				-0.1
3,000,372	+		CA264_12875	0.18	-0.4
3,000,414	+		CA264_12875	0.25	-0.5
3,000,430	+		CA264_12875	0.28	+1.5
3,000,431	-		CA264_12875	0.28	-0.5
3,000,476	-		CA264_12875	0.35	+0.1
3,000,497	+		CA264_12875	0.39	-0.3
3,000,519	+		CA264_12875	0.42	-0.4
3,000,519	+		CA264_12875	0.42	-1.1
3,000,520	-		CA264_12875	0.43	-0.5
3,000,552	-		CA264_12875	0.48	-0.1
3,000,638	-		CA264_12875	0.62	-0.6
3,000,638	-		CA264_12875	0.62	+0.0
3,000,697	+		CA264_12875	0.72	+0.2
3,000,697	+		CA264_12875	0.72	-0.7
3,000,918	+				-0.6
3,000,952	+				+0.2
3,000,954	+				+0.3
3,001,005	-				-0.3
3,001,005	-				-0.4
3,001,009	+				-0.1
3,001,010	-				-0.2
3,001,014	+				-0.6
3,001,014	+				-0.2
3,001,015	-				-0.6
3,001,057	-				+0.5
3,001,067	+				+0.1
3,001,084	+				-0.4
3,001,092	-				-0.0
3,001,114	+				-0.8
3,001,114	+				+0.0
3,001,114	+				-0.8
3,001,114	+				-0.9
3,001,115	-				-0.2
3,001,115	-				-0.3
3,001,115	-				-1.2
3,001,115	-				-0.1
3,001,115	-				+1.0
3,001,115	-				+1.0
3,001,118	-				-0.0
3,001,118	-				-1.2
3,001,124	-				+0.0
3,001,124	-				-0.7
3,001,237	+				+0.9
3,001,238	-				+1.2
3,001,244	+				-0.2
3,001,245	-				+0.4
3,001,357	+				-0.3
3,001,370	+		CA264_12880	0.10	+0.2
3,001,371	-		CA264_12880	0.10	+0.9
3,001,371	-		CA264_12880	0.10	-0.4
3,001,521	-		CA264_12880	0.17	+0.9
3,001,535	-		CA264_12880	0.17	+0.2
3,001,713	+		CA264_12880	0.24	-0.4
3,001,714	-		CA264_12880	0.24	-0.2
3,001,756	-		CA264_12880	0.26	+0.1
3,001,756	-		CA264_12880	0.26	-0.6
3,001,983	+		CA264_12880	0.35	-0.4
3,002,059	+		CA264_12880	0.39	+0.4
3,002,060	-		CA264_12880	0.39	-0.6
3,002,125	-		CA264_12880	0.41	-0.2
3,002,295	+		CA264_12880	0.48	-0.1
3,002,295	+		CA264_12880	0.48	-0.8
3,002,328	+		CA264_12880	0.50	+1.6
3,002,408	+		CA264_12880	0.53	+0.5
3,002,418	+		CA264_12880	0.53	-0.1
3,002,583	+		CA264_12880	0.60	-0.5
3,002,628	+		CA264_12880	0.62	-0.8
3,002,628	+		CA264_12880	0.62	-1.3
3,002,629	-		CA264_12880	0.62	+0.6
3,002,660	-		CA264_12880	0.63	+0.2
3,002,661	+		CA264_12880	0.63	-1.3
3,002,662	-		CA264_12880	0.63	-0.4
3,002,680	+		CA264_12880	0.64	-0.5
3,002,686	-		CA264_12880	0.64	+0.4
3,002,693	+		CA264_12880	0.65	-0.3
3,002,694	-		CA264_12880	0.65	-0.4
3,002,742	+		CA264_12880	0.67	+0.6
3,002,743	-		CA264_12880	0.67	-0.2
3,002,743	-		CA264_12880	0.67	+0.1
3,002,766	+		CA264_12880	0.68	-0.4
3,002,850	-		CA264_12880	0.71	+0.6
3,002,850	-		CA264_12880	0.71	+0.5
3,002,850	-		CA264_12880	0.71	-0.9
3,002,895	-		CA264_12880	0.73	+0.1
3,002,978	+		CA264_12880	0.76	+1.7
3,002,980	+		CA264_12880	0.76	+0.9
3,003,001	+		CA264_12880	0.77	+0.2
3,003,001	+		CA264_12880	0.77	+1.0
3,003,001	+		CA264_12880	0.77	-0.7
3,003,002	-		CA264_12880	0.77	+0.6
3,003,002	-		CA264_12880	0.77	+0.0
3,003,002	-		CA264_12880	0.77	+0.5
3,003,008	+		CA264_12880	0.77	-0.7
3,003,008	+		CA264_12880	0.77	+0.7
3,003,008	+		CA264_12880	0.77	-0.5
3,003,009	-		CA264_12880	0.78	-0.1
3,003,009	-		CA264_12880	0.78	-2.2
3,003,009	-		CA264_12880	0.78	+0.5
3,003,082	+		CA264_12880	0.81	-0.6
3,003,151	-		CA264_12880	0.83	+0.8
3,003,196	+		CA264_12880	0.85	-0.3
3,003,254	-		CA264_12880	0.88	-0.2
3,003,359	+				-1.0
3,003,359	+				-0.1
3,003,368	+				-0.4
3,003,396	-				-0.1
3,003,397	+				+0.3
3,003,398	-				-0.1
3,003,436	-				-0.7
3,003,436	-				+0.3
3,003,436	-				-0.4
3,003,566	-				-0.2
3,003,838	+				-0.1
3,003,849	-				-0.3
3,003,859	+				-0.6
3,003,860	-				-0.2
3,003,860	-				+0.4
3,003,869	-				+0.7
3,003,876	-				-0.2
3,004,011	+		CA264_12885	0.24	+0.2
3,004,050	+		CA264_12885	0.29	-1.4
3,004,050	+		CA264_12885	0.29	+0.1
3,004,089	-		CA264_12885	0.33	+0.6
3,004,089	-		CA264_12885	0.33	+0.1
3,004,138	-		CA264_12885	0.40	+0.2
3,004,179	+		CA264_12885	0.45	-0.1
3,004,180	-		CA264_12885	0.45	+0.6
3,004,180	-		CA264_12885	0.45	-0.2
3,004,180	-		CA264_12885	0.45	-0.9
3,004,200	+		CA264_12885	0.47	+0.5
3,004,201	-		CA264_12885	0.47	+0.3
3,004,201	-		CA264_12885	0.47	+0.5
3,004,201	-		CA264_12885	0.47	-0.3
3,004,203	-		CA264_12885	0.48	-0.9
3,004,218	+		CA264_12885	0.49	-0.1
3,004,219	-		CA264_12885	0.50	-0.2
3,004,219	-		CA264_12885	0.50	+0.1
3,004,224	+		CA264_12885	0.50	-0.7
3,004,260	+		CA264_12885	0.55	-0.1
3,004,260	+		CA264_12885	0.55	-0.6
3,004,302	+		CA264_12885	0.60	+0.8
3,004,311	+		CA264_12885	0.61	+0.5
3,004,335	+		CA264_12885	0.64	-0.3
3,004,335	+		CA264_12885	0.64	+0.2
3,004,336	-		CA264_12885	0.64	+0.7
3,004,368	-				+1.5
3,004,368	-		CA264_12885	0.68	-0.7
3,004,401	+		CA264_12885	0.72	+0.2
3,004,402	-		CA264_12885	0.72	+0.5
3,004,402	-		CA264_12885	0.72	-0.1
3,004,408	-		CA264_12885	0.73	-0.0
3,004,438	+		CA264_12885	0.77	+0.3
3,004,438	+		CA264_12885	0.77	+0.3
3,004,438	+		CA264_12885	0.77	-1.1
3,004,467	-		CA264_12885	0.80	-0.1
3,004,516	-		CA264_12885	0.86	-0.8
3,004,516	-		CA264_12885	0.86	-1.4
3,004,516	-		CA264_12885	0.86	+1.5
3,004,518	-		CA264_12885	0.87	+0.4
3,004,518	-		CA264_12885	0.87	+0.2
3,004,518	-		CA264_12885	0.87	+0.2
3,004,521	+		CA264_12885	0.87	-0.1
3,004,527	+		CA264_12885	0.88	-0.6
3,004,527	+		CA264_12885	0.88	-0.9
3,004,527	+		CA264_12885	0.88	-0.2
3,004,528	-		CA264_12885	0.88	+0.0
3,004,539	+		CA264_12885	0.89	+0.3
3,004,539	+		CA264_12885	0.89	+0.2
3,004,539	+		CA264_12885	0.89	-0.0
3,004,540	-		CA264_12885	0.89	+0.3