Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_03595 and CA264_03600 are separated by 524 nucleotides CA264_03600 and CA264_03605 are separated by 287 nucleotides CA264_03605 and CA264_03610 are separated by 69 nucleotides
CA264_03595: CA264_03595 - sodium:alanine symporter, at 836,935 to 838,389
_03595
CA264_03600: CA264_03600 - ATP-dependent helicase HrpB, at 838,914 to 841,460
_03600
CA264_03605: CA264_03605 - DNA-binding protein, at 841,748 to 842,206
_03605
CA264_03610: CA264_03610 - hypothetical protein, at 842,276 to 842,503
_03610
Position (kb) 838
839
840
841
842 Strain fitness (log2 ratio) -2
-1
0
1
2 at 837.971 kb on + strand, within CA264_03595 at 838.002 kb on - strand, within CA264_03595 at 838.002 kb on - strand, within CA264_03595 at 838.004 kb on + strand, within CA264_03595 at 838.004 kb on + strand, within CA264_03595 at 838.046 kb on + strand, within CA264_03595 at 838.046 kb on + strand, within CA264_03595 at 838.046 kb on + strand, within CA264_03595 at 838.046 kb on + strand, within CA264_03595 at 838.046 kb on + strand, within CA264_03595 at 838.046 kb on + strand, within CA264_03595 at 838.046 kb on + strand, within CA264_03595 at 838.047 kb on - strand, within CA264_03595 at 838.047 kb on - strand, within CA264_03595 at 838.047 kb on - strand, within CA264_03595 at 838.047 kb on - strand, within CA264_03595 at 838.048 kb on + strand, within CA264_03595 at 838.062 kb on + strand, within CA264_03595 at 838.063 kb on - strand, within CA264_03595 at 838.074 kb on - strand, within CA264_03595 at 838.074 kb on - strand, within CA264_03595 at 838.310 kb on + strand at 838.310 kb on + strand at 838.333 kb on + strand at 838.333 kb on + strand at 838.396 kb on + strand at 838.397 kb on - strand at 838.437 kb on + strand at 838.494 kb on + strand at 838.495 kb on - strand at 838.495 kb on - strand at 838.517 kb on + strand at 838.550 kb on + strand at 838.592 kb on - strand at 838.593 kb on + strand at 838.645 kb on + strand at 838.699 kb on - strand at 838.757 kb on - strand at 838.785 kb on + strand at 838.785 kb on + strand at 838.786 kb on - strand at 838.820 kb on - strand at 838.852 kb on + strand at 838.852 kb on + strand at 838.874 kb on + strand at 838.875 kb on - strand at 839.055 kb on + strand at 839.367 kb on - strand, within CA264_03600 at 839.521 kb on - strand, within CA264_03600 at 839.521 kb on - strand, within CA264_03600 at 839.562 kb on + strand, within CA264_03600 at 839.637 kb on + strand, within CA264_03600 at 839.638 kb on - strand, within CA264_03600 at 839.638 kb on - strand, within CA264_03600 at 839.638 kb on - strand, within CA264_03600 at 839.678 kb on + strand, within CA264_03600 at 839.740 kb on + strand, within CA264_03600 at 839.793 kb on + strand, within CA264_03600 at 839.843 kb on - strand, within CA264_03600 at 839.934 kb on + strand, within CA264_03600 at 839.996 kb on + strand, within CA264_03600 at 839.996 kb on + strand, within CA264_03600 at 839.996 kb on + strand, within CA264_03600 at 839.997 kb on - strand, within CA264_03600 at 840.325 kb on - strand, within CA264_03600 at 840.570 kb on + strand, within CA264_03600 at 840.586 kb on - strand, within CA264_03600 at 840.588 kb on - strand, within CA264_03600 at 840.588 kb on - strand, within CA264_03600 at 840.588 kb on - strand at 840.588 kb on - strand, within CA264_03600 at 840.687 kb on + strand, within CA264_03600 at 840.813 kb on + strand, within CA264_03600 at 841.143 kb on + strand, within CA264_03600 at 841.143 kb on + strand, within CA264_03600 at 841.144 kb on - strand, within CA264_03600 at 841.144 kb on - strand, within CA264_03600 at 841.161 kb on + strand, within CA264_03600 at 841.230 kb on - strand at 841.338 kb on - strand at 841.460 kb on + strand at 841.461 kb on - strand at 841.461 kb on - strand at 841.461 kb on - strand at 841.521 kb on - strand at 841.574 kb on + strand at 841.670 kb on + strand at 841.671 kb on - strand at 841.682 kb on + strand at 841.683 kb on - strand at 841.683 kb on - strand at 841.683 kb on - strand at 841.684 kb on + strand at 841.685 kb on - strand at 841.707 kb on + strand at 841.746 kb on - strand at 841.750 kb on - strand at 842.004 kb on - strand, within CA264_03605 at 842.051 kb on - strand, within CA264_03605 at 842.067 kb on + strand, within CA264_03605 at 842.232 kb on - strand at 842.232 kb on - strand at 842.234 kb on + strand at 842.238 kb on - strand at 842.239 kb on + strand at 842.240 kb on - strand at 842.240 kb on - strand at 842.255 kb on + strand at 842.263 kb on + strand at 842.263 kb on + strand at 842.277 kb on + strand at 842.278 kb on - strand at 842.396 kb on - strand, within CA264_03610 at 842.446 kb on + strand, within CA264_03610 at 842.447 kb on - strand, within CA264_03610 at 842.453 kb on + strand, within CA264_03610 at 842.453 kb on + strand, within CA264_03610 at 842.454 kb on - strand, within CA264_03610
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 837,971 + CA264_03595 0.71 +0.6 838,002 - CA264_03595 0.73 -0.2 838,002 - CA264_03595 0.73 +0.9 838,004 + CA264_03595 0.73 -0.1 838,004 + CA264_03595 0.73 +0.3 838,046 + CA264_03595 0.76 -0.2 838,046 + CA264_03595 0.76 +0.1 838,046 + CA264_03595 0.76 -0.1 838,046 + CA264_03595 0.76 -0.7 838,046 + CA264_03595 0.76 +0.3 838,046 + CA264_03595 0.76 +0.2 838,046 + CA264_03595 0.76 +0.9 838,047 - CA264_03595 0.76 -0.7 838,047 - CA264_03595 0.76 -0.7 838,047 - CA264_03595 0.76 -0.6 838,047 - CA264_03595 0.76 -0.3 838,048 + CA264_03595 0.76 +0.1 838,062 + CA264_03595 0.77 +0.6 838,063 - CA264_03595 0.78 -0.2 838,074 - CA264_03595 0.78 +0.1 838,074 - CA264_03595 0.78 -0.3 838,310 + -0.1 838,310 + +0.5 838,333 + -1.1 838,333 + +0.1 838,396 + -1.5 838,397 - -0.5 838,437 + +0.1 838,494 + +0.9 838,495 - +0.3 838,495 - -0.5 838,517 + -0.2 838,550 + -0.2 838,592 - +0.1 838,593 + -0.9 838,645 + -1.5 838,699 - -0.1 838,757 - -0.5 838,785 + +0.9 838,785 + -1.9 838,786 - -2.3 838,820 - -0.7 838,852 + +0.4 838,852 + -0.2 838,874 + -0.0 838,875 - -0.1 839,055 + +0.9 839,367 - CA264_03600 0.18 -1.2 839,521 - CA264_03600 0.24 -0.2 839,521 - CA264_03600 0.24 -0.2 839,562 + CA264_03600 0.25 +0.1 839,637 + CA264_03600 0.28 -0.8 839,638 - CA264_03600 0.28 +0.2 839,638 - CA264_03600 0.28 -0.2 839,638 - CA264_03600 0.28 +0.4 839,678 + CA264_03600 0.30 +0.1 839,740 + CA264_03600 0.32 +0.1 839,793 + CA264_03600 0.35 +0.2 839,843 - CA264_03600 0.36 +0.2 839,934 + CA264_03600 0.40 -0.0 839,996 + CA264_03600 0.42 +0.5 839,996 + CA264_03600 0.42 +0.2 839,996 + CA264_03600 0.42 +1.0 839,997 - CA264_03600 0.43 +0.2 840,325 - CA264_03600 0.55 +0.4 840,570 + CA264_03600 0.65 -1.0 840,586 - CA264_03600 0.66 -0.1 840,588 - CA264_03600 0.66 +1.3 840,588 - CA264_03600 0.66 -0.1 840,588 - +0.3 840,588 - CA264_03600 0.66 +1.8 840,687 + CA264_03600 0.70 +0.7 840,813 + CA264_03600 0.75 -1.4 841,143 + CA264_03600 0.88 +1.0 841,143 + CA264_03600 0.88 -0.0 841,144 - CA264_03600 0.88 +0.1 841,144 - CA264_03600 0.88 +1.3 841,161 + CA264_03600 0.88 +1.3 841,230 - +1.1 841,338 - -1.8 841,460 + -0.4 841,461 - -0.4 841,461 - +0.2 841,461 - +1.1 841,521 - -0.5 841,574 + -0.7 841,670 + -0.5 841,671 - +0.1 841,682 + +0.2 841,683 - +1.8 841,683 - -0.7 841,683 - +0.4 841,684 + -0.5 841,685 - -0.0 841,707 + +0.5 841,746 - +0.4 841,750 - +1.0 842,004 - CA264_03605 0.56 +0.8 842,051 - CA264_03605 0.66 -0.4 842,067 + CA264_03605 0.69 -1.2 842,232 - +1.5 842,232 - -0.2 842,234 + +0.7 842,238 - -0.3 842,239 + -0.5 842,240 - +0.5 842,240 - -0.9 842,255 + +1.1 842,263 + -0.2 842,263 + -0.6 842,277 + +0.0 842,278 - +0.5 842,396 - CA264_03610 0.53 -0.2 842,446 + CA264_03610 0.75 +0.5 842,447 - CA264_03610 0.75 +0.8 842,453 + CA264_03610 0.78 -0.2 842,453 + CA264_03610 0.78 -0.5 842,454 - CA264_03610 0.78 -0.4
Or see this region's nucleotide sequence