Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03495

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03485 and CA264_03490 are separated by 256 nucleotidesCA264_03490 and CA264_03495 are separated by 256 nucleotidesCA264_03495 and CA264_03500 are separated by 139 nucleotides CA264_03485: CA264_03485 - dodecin, at 812,423 to 812,632 _03485 CA264_03490: CA264_03490 - hypothetical protein, at 812,889 to 813,335 _03490 CA264_03495: CA264_03495 - tRNA pseudouridine(38-40) synthase TruA, at 813,592 to 814,401 _03495 CA264_03500: CA264_03500 - excinuclease ABC subunit A, at 814,541 to 817,096 _03500 Position (kb) 813 814 815Strain fitness (log2 ratio) -2 -1 0 1 2at 812.613 kb on - strandat 812.613 kb on - strandat 812.616 kb on - strandat 812.616 kb on - strandat 812.632 kb on + strandat 812.633 kb on - strandat 812.641 kb on + strandat 812.641 kb on + strandat 812.755 kb on + strandat 812.756 kb on - strandat 812.756 kb on - strandat 812.756 kb on - strandat 812.756 kb on - strandat 812.760 kb on + strandat 812.761 kb on - strandat 812.763 kb on - strandat 812.772 kb on - strandat 812.789 kb on + strandat 812.789 kb on + strandat 812.789 kb on + strandat 812.789 kb on + strandat 812.790 kb on - strandat 812.852 kb on - strandat 813.022 kb on + strand, within CA264_03490at 813.118 kb on + strand, within CA264_03490at 813.218 kb on + strand, within CA264_03490at 813.219 kb on - strand, within CA264_03490at 813.219 kb on - strand, within CA264_03490at 813.263 kb on + strand, within CA264_03490at 813.264 kb on - strand, within CA264_03490at 813.275 kb on + strand, within CA264_03490at 813.281 kb on + strand, within CA264_03490at 813.281 kb on + strand, within CA264_03490at 813.335 kb on + strandat 813.335 kb on + strandat 813.335 kb on + strandat 813.336 kb on - strandat 813.339 kb on + strandat 813.340 kb on - strandat 813.340 kb on - strandat 813.412 kb on + strandat 813.414 kb on + strandat 813.414 kb on + strandat 813.415 kb on - strandat 813.429 kb on + strandat 813.430 kb on - strandat 813.430 kb on - strandat 813.430 kb on - strandat 813.461 kb on + strandat 813.462 kb on - strandat 813.462 kb on - strandat 813.564 kb on + strandat 813.619 kb on - strandat 813.675 kb on - strand, within CA264_03495at 813.689 kb on - strand, within CA264_03495at 813.692 kb on + strand, within CA264_03495at 813.693 kb on - strand, within CA264_03495at 813.805 kb on + strand, within CA264_03495at 813.805 kb on + strand, within CA264_03495at 813.806 kb on - strand, within CA264_03495at 813.811 kb on + strand, within CA264_03495at 813.812 kb on - strand, within CA264_03495at 813.847 kb on + strand, within CA264_03495at 813.902 kb on - strand, within CA264_03495at 813.902 kb on - strand, within CA264_03495at 813.902 kb on - strand, within CA264_03495at 813.953 kb on + strand, within CA264_03495at 814.023 kb on - strand, within CA264_03495at 814.080 kb on - strand, within CA264_03495at 814.185 kb on + strand, within CA264_03495at 814.273 kb on - strand, within CA264_03495at 814.273 kb on - strand, within CA264_03495at 814.288 kb on - strand, within CA264_03495at 814.361 kb on + strandat 814.362 kb on - strandat 814.679 kb on + strandat 814.679 kb on + strandat 814.680 kb on - strandat 814.680 kb on - strandat 814.680 kb on - strandat 814.680 kb on - strandat 814.680 kb on - strandat 814.714 kb on + strandat 814.715 kb on - strandat 814.715 kb on - strandat 814.725 kb on - strandat 814.725 kb on - strandat 814.725 kb on - strandat 814.767 kb on - strandat 814.767 kb on - strandat 814.824 kb on + strand, within CA264_03500at 814.955 kb on - strand, within CA264_03500at 814.955 kb on - strand, within CA264_03500at 814.968 kb on - strand, within CA264_03500at 815.047 kb on - strand, within CA264_03500at 815.208 kb on + strand, within CA264_03500at 815.274 kb on + strand, within CA264_03500at 815.274 kb on + strand, within CA264_03500at 815.339 kb on + strand, within CA264_03500

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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812,613 - +0.2
812,613 - +0.5
812,616 - +0.7
812,616 - +0.6
812,632 + +0.5
812,633 - +1.2
812,641 + +0.3
812,641 + -1.0
812,755 + -2.2
812,756 - -0.6
812,756 - +0.3
812,756 - +0.0
812,756 - +0.1
812,760 + -0.1
812,761 - -0.2
812,763 - -1.5
812,772 - -0.1
812,789 + +0.1
812,789 + +0.4
812,789 + +0.1
812,789 + -0.0
812,790 - -0.1
812,852 - +0.9
813,022 + CA264_03490 0.30 +0.6
813,118 + CA264_03490 0.51 -1.1
813,218 + CA264_03490 0.74 +0.4
813,219 - CA264_03490 0.74 -0.7
813,219 - CA264_03490 0.74 -0.4
813,263 + CA264_03490 0.84 -0.6
813,264 - CA264_03490 0.84 -0.9
813,275 + CA264_03490 0.86 +0.0
813,281 + CA264_03490 0.88 +0.1
813,281 + CA264_03490 0.88 +0.4
813,335 + +0.3
813,335 + +0.2
813,335 + -0.6
813,336 - +0.0
813,339 + -0.4
813,340 - +0.6
813,340 - +2.4
813,412 + -0.9
813,414 + -0.8
813,414 + -2.0
813,415 - -0.6
813,429 + -0.1
813,430 - +0.2
813,430 - -1.2
813,430 - -0.2
813,461 + -0.5
813,462 - -0.1
813,462 - -0.6
813,564 + -0.6
813,619 - -0.1
813,675 - CA264_03495 0.10 -0.5
813,689 - CA264_03495 0.12 -2.0
813,692 + CA264_03495 0.12 -0.1
813,693 - CA264_03495 0.12 +1.4
813,805 + CA264_03495 0.26 -0.2
813,805 + CA264_03495 0.26 -0.1
813,806 - CA264_03495 0.26 -0.3
813,811 + CA264_03495 0.27 +0.2
813,812 - CA264_03495 0.27 +0.2
813,847 + CA264_03495 0.31 +0.3
813,902 - CA264_03495 0.38 +0.4
813,902 - CA264_03495 0.38 +1.1
813,902 - CA264_03495 0.38 +0.3
813,953 + CA264_03495 0.45 -0.4
814,023 - CA264_03495 0.53 -1.2
814,080 - CA264_03495 0.60 -0.3
814,185 + CA264_03495 0.73 -1.0
814,273 - CA264_03495 0.84 +0.8
814,273 - CA264_03495 0.84 -0.2
814,288 - CA264_03495 0.86 -0.7
814,361 + -0.1
814,362 - +0.4
814,679 + +0.3
814,679 + +1.9
814,680 - +0.9
814,680 - +0.5
814,680 - -0.5
814,680 - -0.1
814,680 - -0.7
814,714 + -0.4
814,715 - -0.6
814,715 - +0.7
814,725 - -1.6
814,725 - -0.0
814,725 - -1.0
814,767 - +0.5
814,767 - -0.2
814,824 + CA264_03500 0.11 -0.7
814,955 - CA264_03500 0.16 -0.6
814,955 - CA264_03500 0.16 -0.2
814,968 - CA264_03500 0.17 -0.3
815,047 - CA264_03500 0.20 +0.6
815,208 + CA264_03500 0.26 -1.0
815,274 + CA264_03500 0.29 +1.2
815,274 + CA264_03500 0.29 -1.1
815,339 + CA264_03500 0.31 +0.6

Or see this region's nucleotide sequence