Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03090

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03085 and CA264_03090 are separated by 348 nucleotidesCA264_03090 and CA264_03095 are separated by 644 nucleotides CA264_03085: CA264_03085 - polysaccharide transporter, at 720,289 to 721,053 _03085 CA264_03090: CA264_03090 - hypothetical protein, at 721,402 to 721,617 _03090 CA264_03095: CA264_03095 - hypothetical protein, at 722,262 to 722,699 _03095 Position (kb) 721 722Strain fitness (log2 ratio) -2 -1 0 1at 720.420 kb on - strand, within CA264_03085at 720.422 kb on + strand, within CA264_03085at 720.422 kb on + strand, within CA264_03085at 720.461 kb on - strand, within CA264_03085at 720.480 kb on + strand, within CA264_03085at 720.497 kb on - strand, within CA264_03085at 720.499 kb on + strand, within CA264_03085at 720.499 kb on + strand, within CA264_03085at 720.508 kb on - strand, within CA264_03085at 720.581 kb on + strand, within CA264_03085at 720.585 kb on + strand, within CA264_03085at 720.585 kb on + strand, within CA264_03085at 720.587 kb on + strand, within CA264_03085at 720.587 kb on + strand, within CA264_03085at 720.587 kb on + strand, within CA264_03085at 720.587 kb on + strand, within CA264_03085at 720.587 kb on + strand, within CA264_03085at 720.587 kb on + strand, within CA264_03085at 720.594 kb on - strand, within CA264_03085at 720.594 kb on - strand, within CA264_03085at 720.607 kb on + strand, within CA264_03085at 720.608 kb on - strand, within CA264_03085at 720.637 kb on - strand, within CA264_03085at 720.637 kb on - strand, within CA264_03085at 720.671 kb on + strand, within CA264_03085at 720.728 kb on - strand, within CA264_03085at 720.728 kb on - strand, within CA264_03085at 720.742 kb on + strand, within CA264_03085at 720.742 kb on + strand, within CA264_03085at 720.743 kb on - strand, within CA264_03085at 720.757 kb on + strand, within CA264_03085at 720.782 kb on + strand, within CA264_03085at 720.832 kb on - strand, within CA264_03085at 720.853 kb on - strand, within CA264_03085at 720.853 kb on - strand, within CA264_03085at 720.862 kb on - strand, within CA264_03085at 720.896 kb on - strand, within CA264_03085at 720.918 kb on - strand, within CA264_03085at 720.918 kb on - strand, within CA264_03085at 720.918 kb on - strand, within CA264_03085at 720.918 kb on - strand, within CA264_03085at 720.953 kb on + strand, within CA264_03085at 720.954 kb on - strand, within CA264_03085at 721.018 kb on + strandat 721.095 kb on + strandat 721.096 kb on - strandat 721.130 kb on - strandat 721.133 kb on + strandat 721.138 kb on - strandat 721.160 kb on + strandat 721.166 kb on + strandat 721.167 kb on - strandat 721.168 kb on + strandat 721.170 kb on + strandat 721.389 kb on + strandat 721.447 kb on - strand, within CA264_03090at 721.467 kb on + strand, within CA264_03090at 721.467 kb on + strand, within CA264_03090at 721.467 kb on + strand, within CA264_03090at 721.467 kb on + strand, within CA264_03090at 721.467 kb on + strand, within CA264_03090at 721.486 kb on + strand, within CA264_03090at 721.502 kb on + strand, within CA264_03090at 721.502 kb on + strand, within CA264_03090at 721.506 kb on + strand, within CA264_03090at 721.506 kb on + strand, within CA264_03090at 721.506 kb on + strand, within CA264_03090at 721.506 kb on + strand, within CA264_03090at 721.507 kb on - strand, within CA264_03090at 721.507 kb on - strand, within CA264_03090at 721.509 kb on + strand, within CA264_03090at 721.519 kb on + strand, within CA264_03090at 721.519 kb on + strand, within CA264_03090at 721.524 kb on + strand, within CA264_03090at 721.605 kb on + strandat 721.606 kb on - strandat 721.606 kb on - strandat 721.610 kb on + strandat 721.630 kb on + strandat 721.634 kb on + strandat 721.636 kb on + strandat 721.637 kb on - strandat 721.641 kb on - strandat 721.663 kb on - strandat 721.669 kb on + strandat 721.670 kb on - strandat 721.759 kb on + strandat 721.760 kb on - strandat 721.802 kb on + strandat 721.817 kb on + strandat 721.822 kb on + strandat 721.822 kb on + strandat 721.822 kb on + strandat 721.823 kb on - strandat 721.825 kb on + strandat 721.825 kb on + strandat 721.831 kb on + strandat 721.922 kb on + strandat 721.922 kb on + strandat 721.923 kb on - strandat 721.923 kb on - strandat 722.041 kb on - strandat 722.045 kb on + strandat 722.045 kb on + strandat 722.046 kb on - strandat 722.118 kb on + strandat 722.119 kb on - strandat 722.128 kb on + strandat 722.128 kb on + strandat 722.134 kb on + strandat 722.211 kb on + strandat 722.211 kb on + strandat 722.211 kb on + strandat 722.212 kb on - strandat 722.212 kb on - strandat 722.212 kb on - strandat 722.350 kb on + strand, within CA264_03095at 722.350 kb on + strand, within CA264_03095at 722.350 kb on + strand, within CA264_03095at 722.351 kb on - strand, within CA264_03095at 722.483 kb on + strand, within CA264_03095at 722.509 kb on + strand, within CA264_03095at 722.510 kb on - strand, within CA264_03095at 722.583 kb on + strand, within CA264_03095at 722.583 kb on + strand, within CA264_03095at 722.592 kb on + strand, within CA264_03095at 722.593 kb on - strand, within CA264_03095at 722.603 kb on - strand, within CA264_03095

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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720,420 - CA264_03085 0.17 -0.2
720,422 + CA264_03085 0.17 -0.8
720,422 + CA264_03085 0.17 -0.0
720,461 - CA264_03085 0.22 -0.2
720,480 + CA264_03085 0.25 -0.4
720,497 - CA264_03085 0.27 -0.1
720,499 + CA264_03085 0.27 -0.9
720,499 + CA264_03085 0.27 -0.2
720,508 - CA264_03085 0.29 -0.7
720,581 + CA264_03085 0.38 +0.1
720,585 + CA264_03085 0.39 -0.9
720,585 + CA264_03085 0.39 -0.5
720,587 + CA264_03085 0.39 -0.5
720,587 + CA264_03085 0.39 +0.9
720,587 + CA264_03085 0.39 -0.7
720,587 + CA264_03085 0.39 -0.9
720,587 + CA264_03085 0.39 -0.1
720,587 + CA264_03085 0.39 -0.1
720,594 - CA264_03085 0.40 -0.1
720,594 - CA264_03085 0.40 +0.2
720,607 + CA264_03085 0.42 -1.8
720,608 - CA264_03085 0.42 +0.7
720,637 - CA264_03085 0.45 +0.5
720,637 - CA264_03085 0.45 -0.4
720,671 + CA264_03085 0.50 -0.0
720,728 - CA264_03085 0.57 +0.0
720,728 - CA264_03085 0.57 +0.4
720,742 + CA264_03085 0.59 +0.1
720,742 + CA264_03085 0.59 -1.2
720,743 - CA264_03085 0.59 -0.4
720,757 + CA264_03085 0.61 +0.7
720,782 + CA264_03085 0.64 +1.4
720,832 - CA264_03085 0.71 +0.4
720,853 - CA264_03085 0.74 -0.1
720,853 - CA264_03085 0.74 -1.4
720,862 - CA264_03085 0.75 +0.1
720,896 - CA264_03085 0.79 -0.2
720,918 - CA264_03085 0.82 +0.1
720,918 - CA264_03085 0.82 +0.1
720,918 - CA264_03085 0.82 -0.3
720,918 - CA264_03085 0.82 +1.1
720,953 + CA264_03085 0.87 -0.1
720,954 - CA264_03085 0.87 +0.6
721,018 + -0.4
721,095 + -0.7
721,096 - -0.3
721,130 - +0.2
721,133 + -0.2
721,138 - +0.1
721,160 + +1.6
721,166 + -0.5
721,167 - -0.0
721,168 + -0.5
721,170 + -0.4
721,389 + +0.0
721,447 - CA264_03090 0.21 -0.3
721,467 + CA264_03090 0.30 -0.7
721,467 + CA264_03090 0.30 +0.6
721,467 + CA264_03090 0.30 -0.5
721,467 + CA264_03090 0.30 +0.8
721,467 + CA264_03090 0.30 -0.2
721,486 + CA264_03090 0.39 -0.8
721,502 + CA264_03090 0.46 -0.5
721,502 + CA264_03090 0.46 -0.9
721,506 + CA264_03090 0.48 +0.7
721,506 + CA264_03090 0.48 -1.6
721,506 + CA264_03090 0.48 -0.0
721,506 + CA264_03090 0.48 -0.5
721,507 - CA264_03090 0.49 +0.0
721,507 - CA264_03090 0.49 +0.7
721,509 + CA264_03090 0.50 -0.3
721,519 + CA264_03090 0.54 -0.8
721,519 + CA264_03090 0.54 -0.3
721,524 + CA264_03090 0.56 +0.0
721,605 + +1.6
721,606 - +0.3
721,606 - -0.3
721,610 + -0.1
721,630 + +0.2
721,634 + +0.2
721,636 + -0.5
721,637 - -0.9
721,641 - +0.4
721,663 - -0.4
721,669 + +0.0
721,670 - +0.0
721,759 + -0.3
721,760 - -0.6
721,802 + -0.4
721,817 + -0.1
721,822 + -0.8
721,822 + -0.3
721,822 + -0.5
721,823 - -0.0
721,825 + +0.0
721,825 + -0.0
721,831 + -0.1
721,922 + -0.6
721,922 + +1.6
721,923 - +0.2
721,923 - +0.9
722,041 - -0.1
722,045 + +0.2
722,045 + +0.1
722,046 - +1.2
722,118 + +0.5
722,119 - -1.4
722,128 + +0.2
722,128 + -0.4
722,134 + -0.9
722,211 + -0.5
722,211 + +0.1
722,211 + +0.3
722,212 - -0.9
722,212 - -0.2
722,212 - -0.7
722,350 + CA264_03095 0.20 +1.4
722,350 + CA264_03095 0.20 -0.8
722,350 + CA264_03095 0.20 -0.6
722,351 - CA264_03095 0.20 -0.1
722,483 + CA264_03095 0.50 +0.1
722,509 + CA264_03095 0.56 +0.3
722,510 - CA264_03095 0.57 +0.2
722,583 + CA264_03095 0.73 -0.2
722,583 + CA264_03095 0.73 -1.0
722,592 + CA264_03095 0.75 -0.0
722,593 - CA264_03095 0.76 +0.4
722,603 - CA264_03095 0.78 -0.1

Or see this region's nucleotide sequence