Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02560

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02555 and CA264_02560 are separated by 129 nucleotidesCA264_02560 and CA264_02565 are separated by 102 nucleotidesCA264_02565 and CA264_02570 are separated by 11 nucleotidesCA264_02570 and CA264_02575 are separated by 236 nucleotides CA264_02555: CA264_02555 - hypothetical protein, at 597,244 to 597,963 _02555 CA264_02560: CA264_02560 - DUF4153 domain-containing protein, at 598,093 to 599,337 _02560 CA264_02565: CA264_02565 - hypothetical protein, at 599,440 to 599,706 _02565 CA264_02570: CA264_02570 - hypothetical protein, at 599,718 to 600,008 _02570 CA264_02575: CA264_02575 - potassium transporter KefB, at 600,245 to 600,583 _02575 Position (kb) 598 599 600Strain fitness (log2 ratio) -2 -1 0 1 2at 597.115 kb on + strandat 597.190 kb on + strandat 597.271 kb on + strandat 597.376 kb on + strand, within CA264_02555at 597.467 kb on + strand, within CA264_02555at 597.467 kb on + strand, within CA264_02555at 597.500 kb on + strand, within CA264_02555at 597.500 kb on + strand, within CA264_02555at 597.500 kb on + strand, within CA264_02555at 597.501 kb on - strand, within CA264_02555at 597.501 kb on - strand, within CA264_02555at 597.501 kb on - strand, within CA264_02555at 597.525 kb on - strand, within CA264_02555at 597.612 kb on - strand, within CA264_02555at 597.659 kb on + strand, within CA264_02555at 597.660 kb on - strand, within CA264_02555at 597.664 kb on + strand, within CA264_02555at 597.665 kb on - strand, within CA264_02555at 597.717 kb on - strand, within CA264_02555at 597.796 kb on + strand, within CA264_02555at 597.797 kb on - strand, within CA264_02555at 597.841 kb on - strand, within CA264_02555at 597.846 kb on - strand, within CA264_02555at 597.903 kb on - strandat 597.910 kb on - strandat 597.952 kb on + strandat 597.953 kb on - strandat 597.953 kb on - strandat 597.953 kb on - strandat 597.996 kb on + strandat 598.098 kb on + strandat 598.099 kb on - strandat 598.099 kb on - strandat 598.163 kb on + strandat 598.173 kb on + strandat 598.173 kb on + strandat 598.183 kb on + strandat 598.183 kb on + strandat 598.183 kb on + strandat 598.184 kb on - strandat 598.349 kb on - strand, within CA264_02560at 598.354 kb on + strand, within CA264_02560at 598.355 kb on - strand, within CA264_02560at 598.355 kb on - strand, within CA264_02560at 598.360 kb on + strand, within CA264_02560at 598.363 kb on + strand, within CA264_02560at 598.443 kb on + strand, within CA264_02560at 598.500 kb on - strand, within CA264_02560at 598.517 kb on + strand, within CA264_02560at 598.535 kb on + strand, within CA264_02560at 598.535 kb on + strand, within CA264_02560at 598.582 kb on - strand, within CA264_02560at 598.601 kb on - strand, within CA264_02560at 598.673 kb on + strand, within CA264_02560at 598.674 kb on - strand, within CA264_02560at 598.682 kb on + strand, within CA264_02560at 598.684 kb on + strand, within CA264_02560at 598.684 kb on + strand, within CA264_02560at 598.717 kb on + strand, within CA264_02560at 598.761 kb on + strand, within CA264_02560at 598.761 kb on + strand, within CA264_02560at 598.762 kb on - strand, within CA264_02560at 598.803 kb on - strand, within CA264_02560at 598.820 kb on + strand, within CA264_02560at 598.845 kb on - strand, within CA264_02560at 598.845 kb on - strand, within CA264_02560at 598.905 kb on + strand, within CA264_02560at 598.906 kb on - strand, within CA264_02560at 599.056 kb on - strand, within CA264_02560at 599.095 kb on + strand, within CA264_02560at 599.096 kb on - strand, within CA264_02560at 599.119 kb on + strand, within CA264_02560at 599.183 kb on + strand, within CA264_02560at 599.188 kb on + strand, within CA264_02560at 599.188 kb on + strand, within CA264_02560at 599.320 kb on + strandat 599.478 kb on + strand, within CA264_02565at 599.494 kb on + strand, within CA264_02565at 599.573 kb on + strand, within CA264_02565at 599.681 kb on + strandat 599.681 kb on + strandat 599.681 kb on + strandat 599.746 kb on - strandat 599.788 kb on - strand, within CA264_02570at 599.890 kb on - strand, within CA264_02570at 599.931 kb on + strand, within CA264_02570at 599.931 kb on + strand, within CA264_02570at 599.932 kb on - strand, within CA264_02570at 599.985 kb on - strandat 599.985 kb on - strandat 600.008 kb on + strandat 600.078 kb on - strandat 600.099 kb on + strandat 600.099 kb on + strandat 600.099 kb on + strandat 600.136 kb on + strandat 600.171 kb on - strandat 600.191 kb on + strandat 600.192 kb on - strandat 600.221 kb on - strandat 600.303 kb on + strand, within CA264_02575at 600.304 kb on - strand, within CA264_02575at 600.304 kb on - strand, within CA264_02575at 600.305 kb on + strand, within CA264_02575at 600.323 kb on - strand, within CA264_02575at 600.323 kb on - strand, within CA264_02575at 600.324 kb on + strand, within CA264_02575

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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597,115 + +0.8
597,190 + +0.4
597,271 + -0.5
597,376 + CA264_02555 0.18 +0.2
597,467 + CA264_02555 0.31 -0.3
597,467 + CA264_02555 0.31 +1.0
597,500 + CA264_02555 0.36 +0.1
597,500 + CA264_02555 0.36 +0.9
597,500 + CA264_02555 0.36 -0.1
597,501 - CA264_02555 0.36 -0.8
597,501 - CA264_02555 0.36 +0.4
597,501 - CA264_02555 0.36 +0.3
597,525 - CA264_02555 0.39 +1.3
597,612 - CA264_02555 0.51 +0.1
597,659 + CA264_02555 0.58 -0.3
597,660 - CA264_02555 0.58 -0.0
597,664 + CA264_02555 0.58 +0.4
597,665 - CA264_02555 0.58 +0.1
597,717 - CA264_02555 0.66 -1.7
597,796 + CA264_02555 0.77 +0.1
597,797 - CA264_02555 0.77 -0.8
597,841 - CA264_02555 0.83 +0.8
597,846 - CA264_02555 0.84 -0.1
597,903 - -0.5
597,910 - -1.0
597,952 + -0.5
597,953 - -1.5
597,953 - +1.1
597,953 - -0.2
597,996 + +0.1
598,098 + +1.0
598,099 - -0.2
598,099 - -0.3
598,163 + +2.0
598,173 + +2.2
598,173 + -0.1
598,183 + -0.3
598,183 + -0.2
598,183 + -0.7
598,184 - -0.6
598,349 - CA264_02560 0.21 +0.6
598,354 + CA264_02560 0.21 -0.8
598,355 - CA264_02560 0.21 -0.3
598,355 - CA264_02560 0.21 -0.0
598,360 + CA264_02560 0.21 +0.6
598,363 + CA264_02560 0.22 -0.8
598,443 + CA264_02560 0.28 -0.3
598,500 - CA264_02560 0.33 -0.1
598,517 + CA264_02560 0.34 +0.3
598,535 + CA264_02560 0.36 -0.1
598,535 + CA264_02560 0.36 +0.3
598,582 - CA264_02560 0.39 -0.5
598,601 - CA264_02560 0.41 +0.0
598,673 + CA264_02560 0.47 -0.0
598,674 - CA264_02560 0.47 -0.5
598,682 + CA264_02560 0.47 +0.8
598,684 + CA264_02560 0.47 -0.3
598,684 + CA264_02560 0.47 -0.8
598,717 + CA264_02560 0.50 -1.2
598,761 + CA264_02560 0.54 +0.2
598,761 + CA264_02560 0.54 -0.2
598,762 - CA264_02560 0.54 +0.0
598,803 - CA264_02560 0.57 -2.3
598,820 + CA264_02560 0.58 -0.6
598,845 - CA264_02560 0.60 +0.6
598,845 - CA264_02560 0.60 +1.1
598,905 + CA264_02560 0.65 -0.4
598,906 - CA264_02560 0.65 +0.7
599,056 - CA264_02560 0.77 +0.1
599,095 + CA264_02560 0.80 +0.2
599,096 - CA264_02560 0.81 +0.5
599,119 + CA264_02560 0.82 -0.6
599,183 + CA264_02560 0.88 -0.1
599,188 + CA264_02560 0.88 +0.8
599,188 + CA264_02560 0.88 -0.4
599,320 + +1.2
599,478 + CA264_02565 0.14 +0.7
599,494 + CA264_02565 0.20 -0.5
599,573 + CA264_02565 0.50 +0.2
599,681 + +0.3
599,681 + -0.3
599,681 + -0.1
599,746 - -0.9
599,788 - CA264_02570 0.24 -1.0
599,890 - CA264_02570 0.59 -0.2
599,931 + CA264_02570 0.73 +1.0
599,931 + CA264_02570 0.73 -0.6
599,932 - CA264_02570 0.74 -0.1
599,985 - +0.1
599,985 - -0.1
600,008 + -0.2
600,078 - -0.8
600,099 + +0.2
600,099 + +0.0
600,099 + +0.0
600,136 + +0.4
600,171 - -0.4
600,191 + -0.3
600,192 - +0.4
600,221 - -0.7
600,303 + CA264_02575 0.17 +0.2
600,304 - CA264_02575 0.17 -0.3
600,304 - CA264_02575 0.17 +0.8
600,305 + CA264_02575 0.18 -2.2
600,323 - CA264_02575 0.23 +0.3
600,323 - CA264_02575 0.23 +1.4
600,324 + CA264_02575 0.23 +0.5

Or see this region's nucleotide sequence