Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02090

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02085 and CA264_02090 are separated by 36 nucleotidesCA264_02090 and CA264_02095 are separated by 100 nucleotides CA264_02085: CA264_02085 - hypothetical protein, at 480,865 to 481,812 _02085 CA264_02090: CA264_02090 - peptidase M28, at 481,849 to 483,147 _02090 CA264_02095: CA264_02095 - AI-2E family transporter, at 483,248 to 484,306 _02095 Position (kb) 481 482 483 484Strain fitness (log2 ratio) -2 -1 0 1 2at 480.874 kb on - strandat 480.878 kb on + strandat 480.892 kb on + strandat 480.893 kb on - strandat 480.912 kb on + strandat 480.913 kb on - strandat 480.923 kb on + strandat 480.923 kb on + strandat 480.929 kb on - strandat 480.929 kb on - strandat 480.961 kb on + strand, within CA264_02085at 480.961 kb on + strand, within CA264_02085at 480.964 kb on - strand, within CA264_02085at 480.984 kb on + strand, within CA264_02085at 480.990 kb on + strand, within CA264_02085at 481.003 kb on + strand, within CA264_02085at 481.003 kb on + strand, within CA264_02085at 481.003 kb on + strand, within CA264_02085at 481.114 kb on - strand, within CA264_02085at 481.134 kb on + strand, within CA264_02085at 481.171 kb on + strand, within CA264_02085at 481.212 kb on + strand, within CA264_02085at 481.218 kb on - strand, within CA264_02085at 481.221 kb on + strand, within CA264_02085at 481.222 kb on - strand, within CA264_02085at 481.233 kb on + strand, within CA264_02085at 481.236 kb on + strand, within CA264_02085at 481.238 kb on + strand, within CA264_02085at 481.238 kb on + strand, within CA264_02085at 481.387 kb on - strand, within CA264_02085at 481.424 kb on - strand, within CA264_02085at 481.475 kb on - strand, within CA264_02085at 481.489 kb on + strand, within CA264_02085at 481.490 kb on - strand, within CA264_02085at 481.599 kb on - strand, within CA264_02085at 481.675 kb on + strand, within CA264_02085at 481.675 kb on + strand, within CA264_02085at 481.675 kb on + strand, within CA264_02085at 481.676 kb on - strand, within CA264_02085at 481.679 kb on - strand, within CA264_02085at 481.679 kb on - strand, within CA264_02085at 481.684 kb on + strand, within CA264_02085at 481.685 kb on - strand, within CA264_02085at 481.762 kb on + strandat 481.762 kb on + strandat 481.763 kb on - strandat 481.763 kb on - strandat 481.767 kb on + strandat 481.768 kb on - strandat 481.771 kb on + strandat 481.816 kb on - strandat 481.838 kb on - strandat 481.866 kb on + strandat 481.867 kb on - strandat 481.867 kb on - strandat 481.867 kb on - strandat 481.871 kb on - strandat 482.006 kb on - strand, within CA264_02090at 482.114 kb on + strand, within CA264_02090at 482.115 kb on - strand, within CA264_02090at 482.115 kb on - strand, within CA264_02090at 482.180 kb on + strand, within CA264_02090at 482.257 kb on + strand, within CA264_02090at 482.258 kb on - strand, within CA264_02090at 482.273 kb on + strand, within CA264_02090at 482.273 kb on + strand, within CA264_02090at 482.274 kb on - strand, within CA264_02090at 482.355 kb on - strand, within CA264_02090at 482.355 kb on - strand, within CA264_02090at 482.375 kb on - strand, within CA264_02090at 482.375 kb on - strand, within CA264_02090at 482.459 kb on + strand, within CA264_02090at 482.524 kb on + strand, within CA264_02090at 482.539 kb on + strand, within CA264_02090at 482.540 kb on - strand, within CA264_02090at 482.540 kb on - strand, within CA264_02090at 482.540 kb on - strand, within CA264_02090at 482.562 kb on + strand, within CA264_02090at 482.563 kb on - strand, within CA264_02090at 482.564 kb on + strand, within CA264_02090at 482.565 kb on - strand, within CA264_02090at 482.565 kb on - strand, within CA264_02090at 482.565 kb on - strand, within CA264_02090at 482.595 kb on + strand, within CA264_02090at 482.600 kb on - strand, within CA264_02090at 482.600 kb on - strand, within CA264_02090at 482.655 kb on - strand, within CA264_02090at 482.707 kb on + strand, within CA264_02090at 482.707 kb on + strand, within CA264_02090at 482.708 kb on - strand, within CA264_02090at 482.708 kb on - strand, within CA264_02090at 482.708 kb on - strand, within CA264_02090at 482.830 kb on + strand, within CA264_02090at 482.830 kb on + strand, within CA264_02090at 482.831 kb on - strand, within CA264_02090at 482.867 kb on - strand, within CA264_02090at 483.198 kb on - strandat 483.236 kb on + strandat 483.236 kb on + strandat 483.256 kb on + strandat 483.257 kb on - strandat 483.267 kb on + strandat 483.290 kb on + strandat 483.567 kb on - strand, within CA264_02095at 483.607 kb on - strand, within CA264_02095at 483.675 kb on - strand, within CA264_02095at 483.676 kb on + strand, within CA264_02095at 483.677 kb on - strand, within CA264_02095at 483.755 kb on - strand, within CA264_02095at 483.755 kb on - strand, within CA264_02095at 483.767 kb on + strand, within CA264_02095at 483.768 kb on - strand, within CA264_02095at 483.768 kb on - strand, within CA264_02095at 483.811 kb on - strand, within CA264_02095at 483.833 kb on + strand, within CA264_02095at 483.834 kb on - strand, within CA264_02095at 483.837 kb on - strand, within CA264_02095at 483.844 kb on + strand, within CA264_02095at 483.845 kb on - strand, within CA264_02095at 483.846 kb on + strand, within CA264_02095at 483.950 kb on - strand, within CA264_02095at 483.951 kb on + strand, within CA264_02095at 483.952 kb on - strand, within CA264_02095at 483.952 kb on - strand, within CA264_02095at 484.022 kb on + strand, within CA264_02095at 484.023 kb on - strand, within CA264_02095at 484.054 kb on + strand, within CA264_02095at 484.132 kb on + strand, within CA264_02095at 484.132 kb on + strand, within CA264_02095at 484.132 kb on + strand, within CA264_02095at 484.132 kb on + strand, within CA264_02095at 484.132 kb on + strand, within CA264_02095

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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480,874 - -0.1
480,878 + +0.3
480,892 + -0.0
480,893 - -0.1
480,912 + +0.1
480,913 - -0.3
480,923 + +0.6
480,923 + -0.0
480,929 - -0.1
480,929 - +1.2
480,961 + CA264_02085 0.10 -0.4
480,961 + CA264_02085 0.10 +1.0
480,964 - CA264_02085 0.10 +0.6
480,984 + CA264_02085 0.13 +0.6
480,990 + CA264_02085 0.13 -0.6
481,003 + CA264_02085 0.15 -0.3
481,003 + CA264_02085 0.15 -1.0
481,003 + CA264_02085 0.15 -0.7
481,114 - CA264_02085 0.26 -0.1
481,134 + CA264_02085 0.28 +0.5
481,171 + CA264_02085 0.32 -1.0
481,212 + CA264_02085 0.37 +0.2
481,218 - CA264_02085 0.37 +0.0
481,221 + CA264_02085 0.38 +0.6
481,222 - CA264_02085 0.38 -1.8
481,233 + CA264_02085 0.39 +0.4
481,236 + CA264_02085 0.39 +1.1
481,238 + CA264_02085 0.39 +0.3
481,238 + CA264_02085 0.39 +0.9
481,387 - CA264_02085 0.55 -0.4
481,424 - CA264_02085 0.59 -0.9
481,475 - CA264_02085 0.64 +1.7
481,489 + CA264_02085 0.66 +0.7
481,490 - CA264_02085 0.66 +0.3
481,599 - CA264_02085 0.77 -0.4
481,675 + CA264_02085 0.85 +1.1
481,675 + CA264_02085 0.85 +0.7
481,675 + CA264_02085 0.85 -1.3
481,676 - CA264_02085 0.86 +0.4
481,679 - CA264_02085 0.86 +1.2
481,679 - CA264_02085 0.86 -0.1
481,684 + CA264_02085 0.86 -0.1
481,685 - CA264_02085 0.86 +0.4
481,762 + -0.1
481,762 + -0.2
481,763 - -0.5
481,763 - -1.5
481,767 + -0.1
481,768 - +0.9
481,771 + -0.5
481,816 - -0.7
481,838 - +0.9
481,866 + +0.1
481,867 - -0.8
481,867 - +1.3
481,867 - -1.4
481,871 - +0.5
482,006 - CA264_02090 0.12 +0.0
482,114 + CA264_02090 0.20 +1.8
482,115 - CA264_02090 0.20 -0.2
482,115 - CA264_02090 0.20 -0.1
482,180 + CA264_02090 0.25 +0.1
482,257 + CA264_02090 0.31 +0.7
482,258 - CA264_02090 0.31 -1.2
482,273 + CA264_02090 0.33 -0.2
482,273 + CA264_02090 0.33 -0.1
482,274 - CA264_02090 0.33 +0.1
482,355 - CA264_02090 0.39 +0.1
482,355 - CA264_02090 0.39 -1.4
482,375 - CA264_02090 0.40 +0.7
482,375 - CA264_02090 0.40 -0.1
482,459 + CA264_02090 0.47 -0.2
482,524 + CA264_02090 0.52 -1.2
482,539 + CA264_02090 0.53 +0.6
482,540 - CA264_02090 0.53 -0.1
482,540 - CA264_02090 0.53 +0.7
482,540 - CA264_02090 0.53 +0.2
482,562 + CA264_02090 0.55 +0.4
482,563 - CA264_02090 0.55 +0.2
482,564 + CA264_02090 0.55 +0.7
482,565 - CA264_02090 0.55 -1.4
482,565 - CA264_02090 0.55 +0.2
482,565 - CA264_02090 0.55 +0.5
482,595 + CA264_02090 0.57 -1.8
482,600 - CA264_02090 0.58 -2.4
482,600 - CA264_02090 0.58 +0.2
482,655 - CA264_02090 0.62 +0.2
482,707 + CA264_02090 0.66 -0.0
482,707 + CA264_02090 0.66 -1.2
482,708 - CA264_02090 0.66 -0.0
482,708 - CA264_02090 0.66 +0.1
482,708 - CA264_02090 0.66 -0.2
482,830 + CA264_02090 0.76 -0.5
482,830 + CA264_02090 0.76 -1.0
482,831 - CA264_02090 0.76 +0.2
482,867 - CA264_02090 0.78 -1.4
483,198 - +0.1
483,236 + +1.2
483,236 + -2.0
483,256 + -0.3
483,257 - -0.7
483,267 + -0.3
483,290 + +2.0
483,567 - CA264_02095 0.30 +1.9
483,607 - CA264_02095 0.34 -0.1
483,675 - CA264_02095 0.40 +0.7
483,676 + CA264_02095 0.40 -0.2
483,677 - CA264_02095 0.41 -0.1
483,755 - CA264_02095 0.48 +0.5
483,755 - CA264_02095 0.48 +0.8
483,767 + CA264_02095 0.49 -0.6
483,768 - CA264_02095 0.49 +0.2
483,768 - CA264_02095 0.49 -0.1
483,811 - CA264_02095 0.53 +0.3
483,833 + CA264_02095 0.55 +0.1
483,834 - CA264_02095 0.55 +0.3
483,837 - CA264_02095 0.56 +0.0
483,844 + CA264_02095 0.56 +0.6
483,845 - CA264_02095 0.56 -0.8
483,846 + CA264_02095 0.56 +0.5
483,950 - CA264_02095 0.66 +0.1
483,951 + CA264_02095 0.66 -1.0
483,952 - CA264_02095 0.66 +0.3
483,952 - CA264_02095 0.66 +1.2
484,022 + CA264_02095 0.73 +0.9
484,023 - CA264_02095 0.73 +0.5
484,054 + CA264_02095 0.76 -0.6
484,132 + CA264_02095 0.83 +0.7
484,132 + CA264_02095 0.83 +1.2
484,132 + CA264_02095 0.83 -0.3
484,132 + CA264_02095 0.83 +0.7
484,132 + CA264_02095 0.83 +1.3

Or see this region's nucleotide sequence