Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_01910 and CA264_01915 are separated by 292 nucleotides CA264_01915 and CA264_01920 overlap by 4 nucleotides CA264_01920 and CA264_01925 are separated by 347 nucleotides CA264_01925 and CA264_01930 are separated by 11 nucleotides
CA264_01910: CA264_01910 - transposase, at 445,924 to 446,472
_01910
CA264_01915: CA264_01915 - hypothetical protein, at 446,765 to 447,676
_01915
CA264_01920: CA264_01920 - hypothetical protein, at 447,673 to 448,083
_01920
CA264_01925: CA264_01925 - tRNA-Leu, at 448,431 to 448,514
_01925
CA264_01930: CA264_01930 - Fe-S protein assembly co-chaperone HscB, at 448,526 to 449,062
_01930
Position (kb) 446
447
448 Strain fitness (log2 ratio) -2
-1
0
1
2 at 445.769 kb on + strand at 445.769 kb on + strand at 445.769 kb on + strand at 445.769 kb on + strand at 445.769 kb on + strand at 445.769 kb on + strand at 445.803 kb on + strand at 445.803 kb on + strand at 445.803 kb on + strand at 445.803 kb on + strand at 445.803 kb on + strand at 445.804 kb on - strand at 445.804 kb on - strand at 445.804 kb on - strand at 445.853 kb on - strand at 445.863 kb on + strand at 445.901 kb on - strand at 445.910 kb on + strand at 445.910 kb on + strand at 445.910 kb on + strand at 445.910 kb on + strand at 445.911 kb on - strand at 445.939 kb on - strand at 445.941 kb on + strand at 445.942 kb on - strand at 445.967 kb on + strand at 445.985 kb on + strand, within CA264_01910 at 445.985 kb on + strand, within CA264_01910 at 445.986 kb on - strand, within CA264_01910 at 445.989 kb on + strand, within CA264_01910 at 445.990 kb on - strand, within CA264_01910 at 446.041 kb on - strand, within CA264_01910 at 446.042 kb on + strand, within CA264_01910 at 446.042 kb on + strand, within CA264_01910 at 446.043 kb on - strand, within CA264_01910 at 446.043 kb on - strand, within CA264_01910 at 446.043 kb on - strand, within CA264_01910 at 446.077 kb on - strand, within CA264_01910 at 446.227 kb on - strand, within CA264_01910 at 446.227 kb on - strand, within CA264_01910 at 446.307 kb on + strand, within CA264_01910 at 446.352 kb on + strand, within CA264_01910 at 446.353 kb on - strand, within CA264_01910 at 446.353 kb on - strand, within CA264_01910 at 446.378 kb on + strand, within CA264_01910 at 446.379 kb on - strand, within CA264_01910 at 446.410 kb on + strand, within CA264_01910 at 446.410 kb on + strand, within CA264_01910 at 446.411 kb on - strand, within CA264_01910 at 446.432 kb on + strand at 446.435 kb on - strand at 446.460 kb on - strand at 446.472 kb on + strand at 446.473 kb on - strand at 446.479 kb on + strand at 446.479 kb on + strand at 446.480 kb on - strand at 446.480 kb on - strand at 446.482 kb on + strand at 446.483 kb on - strand at 446.483 kb on - strand at 446.483 kb on - strand at 446.490 kb on - strand at 446.500 kb on + strand at 446.500 kb on + strand at 446.501 kb on - strand at 446.509 kb on - strand at 446.538 kb on + strand at 446.538 kb on + strand at 446.539 kb on - strand at 446.545 kb on + strand at 446.549 kb on + strand at 446.550 kb on - strand at 446.550 kb on - strand at 446.695 kb on - strand at 446.695 kb on - strand at 446.716 kb on + strand at 446.716 kb on + strand at 446.716 kb on + strand at 446.717 kb on - strand at 446.723 kb on - strand at 446.820 kb on + strand at 446.877 kb on + strand, within CA264_01915 at 446.941 kb on + strand, within CA264_01915 at 446.969 kb on + strand, within CA264_01915 at 447.052 kb on + strand, within CA264_01915 at 447.121 kb on - strand, within CA264_01915 at 447.121 kb on - strand, within CA264_01915 at 447.132 kb on - strand, within CA264_01915 at 447.153 kb on - strand, within CA264_01915 at 447.157 kb on + strand, within CA264_01915 at 447.227 kb on + strand, within CA264_01915 at 447.230 kb on - strand, within CA264_01915 at 447.238 kb on + strand, within CA264_01915 at 447.252 kb on - strand, within CA264_01915 at 447.270 kb on - strand, within CA264_01915 at 447.434 kb on + strand, within CA264_01915 at 447.447 kb on - strand, within CA264_01915 at 447.447 kb on - strand, within CA264_01915 at 447.447 kb on - strand, within CA264_01915 at 447.480 kb on - strand, within CA264_01915 at 447.522 kb on - strand, within CA264_01915 at 447.542 kb on + strand, within CA264_01915 at 447.592 kb on + strand at 447.592 kb on + strand at 447.593 kb on - strand at 447.648 kb on - strand at 447.648 kb on - strand at 447.661 kb on + strand at 447.662 kb on - strand at 447.676 kb on + strand at 447.677 kb on - strand at 447.678 kb on + strand at 447.679 kb on - strand at 447.679 kb on - strand at 447.698 kb on - strand at 447.702 kb on - strand at 447.702 kb on - strand at 447.706 kb on + strand at 447.706 kb on + strand at 447.706 kb on + strand at 447.726 kb on + strand, within CA264_01920 at 447.726 kb on + strand, within CA264_01920 at 447.727 kb on - strand, within CA264_01920 at 447.727 kb on - strand, within CA264_01920 at 447.732 kb on + strand, within CA264_01920 at 447.732 kb on + strand, within CA264_01920 at 447.733 kb on - strand, within CA264_01920 at 447.736 kb on + strand, within CA264_01920 at 447.737 kb on - strand, within CA264_01920 at 447.743 kb on - strand, within CA264_01920 at 447.744 kb on + strand, within CA264_01920 at 447.784 kb on - strand, within CA264_01920 at 447.808 kb on - strand, within CA264_01920 at 447.818 kb on - strand, within CA264_01920 at 447.916 kb on + strand, within CA264_01920 at 447.919 kb on - strand, within CA264_01920 at 447.958 kb on + strand, within CA264_01920 at 447.979 kb on - strand, within CA264_01920 at 448.067 kb on - strand at 448.067 kb on - strand at 448.067 kb on - strand at 448.111 kb on + strand at 448.120 kb on + strand at 448.120 kb on + strand at 448.163 kb on - strand at 448.164 kb on + strand at 448.164 kb on + strand at 448.164 kb on + strand at 448.164 kb on + strand at 448.165 kb on - strand at 448.168 kb on - strand at 448.233 kb on + strand at 448.234 kb on - strand at 448.288 kb on - strand at 448.334 kb on + strand at 448.340 kb on + strand at 448.340 kb on + strand at 448.393 kb on + strand at 448.402 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 445,769 + -0.8 445,769 + +0.0 445,769 + +0.4 445,769 + -0.0 445,769 + -0.4 445,769 + -0.3 445,803 + -1.6 445,803 + -0.4 445,803 + -0.5 445,803 + +0.2 445,803 + -0.3 445,804 - -1.9 445,804 - +1.2 445,804 - -0.6 445,853 - +0.5 445,863 + +0.3 445,901 - -0.2 445,910 + -0.3 445,910 + -1.0 445,910 + -1.1 445,910 + -1.0 445,911 - -0.6 445,939 - +0.2 445,941 + -0.8 445,942 - -0.1 445,967 + +0.7 445,985 + CA264_01910 0.11 +1.3 445,985 + CA264_01910 0.11 +2.5 445,986 - CA264_01910 0.11 +0.4 445,989 + CA264_01910 0.12 -0.9 445,990 - CA264_01910 0.12 +0.6 446,041 - CA264_01910 0.21 +0.0 446,042 + CA264_01910 0.21 +0.3 446,042 + CA264_01910 0.21 +0.2 446,043 - CA264_01910 0.22 +0.0 446,043 - CA264_01910 0.22 +0.4 446,043 - CA264_01910 0.22 -1.3 446,077 - CA264_01910 0.28 -0.0 446,227 - CA264_01910 0.55 -1.1 446,227 - CA264_01910 0.55 -0.3 446,307 + CA264_01910 0.70 -0.3 446,352 + CA264_01910 0.78 -0.2 446,353 - CA264_01910 0.78 -0.8 446,353 - CA264_01910 0.78 -0.3 446,378 + CA264_01910 0.83 -0.1 446,379 - CA264_01910 0.83 -0.7 446,410 + CA264_01910 0.89 +0.2 446,410 + CA264_01910 0.89 -0.2 446,411 - CA264_01910 0.89 -1.4 446,432 + +0.2 446,435 - -0.0 446,460 - +0.6 446,472 + -0.8 446,473 - -0.0 446,479 + -0.1 446,479 + +0.7 446,480 - -0.9 446,480 - -0.3 446,482 + -1.0 446,483 - -0.2 446,483 - -0.7 446,483 - -0.4 446,490 - +0.1 446,500 + -0.4 446,500 + -0.8 446,501 - +1.1 446,509 - +0.3 446,538 + +0.2 446,538 + -0.4 446,539 - +0.1 446,545 + +0.7 446,549 + -0.3 446,550 - +0.5 446,550 - +0.1 446,695 - +1.9 446,695 - +0.5 446,716 + -0.1 446,716 + +0.5 446,716 + +0.9 446,717 - -0.7 446,723 - +0.8 446,820 + +0.3 446,877 + CA264_01915 0.12 +0.0 446,941 + CA264_01915 0.19 +1.9 446,969 + CA264_01915 0.22 -0.0 447,052 + CA264_01915 0.31 -0.7 447,121 - CA264_01915 0.39 -0.3 447,121 - CA264_01915 0.39 +0.7 447,132 - CA264_01915 0.40 -0.4 447,153 - CA264_01915 0.43 +0.6 447,157 + CA264_01915 0.43 +0.4 447,227 + CA264_01915 0.51 +1.3 447,230 - CA264_01915 0.51 -0.3 447,238 + CA264_01915 0.52 +1.8 447,252 - CA264_01915 0.53 +0.1 447,270 - CA264_01915 0.55 -0.1 447,434 + CA264_01915 0.73 +0.9 447,447 - CA264_01915 0.75 +0.2 447,447 - CA264_01915 0.75 -0.3 447,447 - CA264_01915 0.75 -0.0 447,480 - CA264_01915 0.78 +0.1 447,522 - CA264_01915 0.83 -0.1 447,542 + CA264_01915 0.85 -0.5 447,592 + -0.2 447,592 + -0.2 447,593 - -1.4 447,648 - +0.2 447,648 - -0.6 447,661 + -0.6 447,662 - +1.4 447,676 + -0.1 447,677 - -0.5 447,678 + -0.1 447,679 - -0.3 447,679 - +0.4 447,698 - -0.2 447,702 - -0.7 447,702 - -0.6 447,706 + -0.2 447,706 + +0.1 447,706 + -0.5 447,726 + CA264_01920 0.13 +0.0 447,726 + CA264_01920 0.13 -0.2 447,727 - CA264_01920 0.13 -0.5 447,727 - CA264_01920 0.13 +0.1 447,732 + CA264_01920 0.14 +0.1 447,732 + CA264_01920 0.14 -0.9 447,733 - CA264_01920 0.15 -0.1 447,736 + CA264_01920 0.15 -0.5 447,737 - CA264_01920 0.16 -0.3 447,743 - CA264_01920 0.17 +0.1 447,744 + CA264_01920 0.17 +0.3 447,784 - CA264_01920 0.27 -0.4 447,808 - CA264_01920 0.33 +0.6 447,818 - CA264_01920 0.35 +0.1 447,916 + CA264_01920 0.59 -0.2 447,919 - CA264_01920 0.60 -1.2 447,958 + CA264_01920 0.69 +0.4 447,979 - CA264_01920 0.74 +0.4 448,067 - -0.7 448,067 - -0.2 448,067 - -0.1 448,111 + +1.2 448,120 + -0.5 448,120 + -0.3 448,163 - -0.1 448,164 + +0.6 448,164 + -0.2 448,164 + +0.4 448,164 + -0.0 448,165 - -0.5 448,168 - +0.1 448,233 + -0.4 448,234 - +0.0 448,288 - -0.7 448,334 + +0.4 448,340 + +1.9 448,340 + -0.5 448,393 + +0.4 448,402 + +0.6
Or see this region's nucleotide sequence