Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_01005

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_01000 and CA264_01005 are separated by 41 nucleotidesCA264_01005 and CA264_01010 are separated by 126 nucleotides CA264_01000: CA264_01000 - hypothetical protein, at 217,849 to 219,159 _01000 CA264_01005: CA264_01005 - group 1 glycosyl transferase, at 219,201 to 220,340 _01005 CA264_01010: CA264_01010 - group 1 glycosyl transferase, at 220,467 to 221,612 _01010 Position (kb) 219 220 221Strain fitness (log2 ratio) -1 0 1at 218.214 kb on + strand, within CA264_01000at 218.215 kb on - strand, within CA264_01000at 218.253 kb on - strand, within CA264_01000at 218.313 kb on + strand, within CA264_01000at 218.313 kb on + strand, within CA264_01000at 218.314 kb on - strand, within CA264_01000at 218.314 kb on - strand, within CA264_01000at 218.314 kb on - strand, within CA264_01000at 218.325 kb on + strand, within CA264_01000at 218.373 kb on - strand, within CA264_01000at 218.373 kb on - strand, within CA264_01000at 218.373 kb on - strand, within CA264_01000at 218.388 kb on - strand, within CA264_01000at 218.388 kb on - strand, within CA264_01000at 218.608 kb on - strand, within CA264_01000at 218.706 kb on + strand, within CA264_01000at 218.741 kb on - strand, within CA264_01000at 218.826 kb on + strand, within CA264_01000at 218.828 kb on + strand, within CA264_01000at 218.828 kb on + strand, within CA264_01000at 218.872 kb on + strand, within CA264_01000at 218.879 kb on + strand, within CA264_01000at 218.974 kb on + strand, within CA264_01000at 219.001 kb on - strand, within CA264_01000at 219.009 kb on + strand, within CA264_01000at 219.010 kb on - strand, within CA264_01000at 219.164 kb on - strandat 219.175 kb on - strandat 219.187 kb on + strandat 219.219 kb on + strandat 219.289 kb on - strandat 219.330 kb on + strand, within CA264_01005at 219.330 kb on + strand, within CA264_01005at 219.383 kb on + strand, within CA264_01005at 219.386 kb on + strand, within CA264_01005at 219.387 kb on - strand, within CA264_01005at 219.445 kb on - strand, within CA264_01005at 219.463 kb on - strand, within CA264_01005at 219.498 kb on + strand, within CA264_01005at 219.557 kb on + strand, within CA264_01005at 219.671 kb on + strand, within CA264_01005at 219.674 kb on - strand, within CA264_01005at 219.691 kb on - strand, within CA264_01005at 219.691 kb on - strand, within CA264_01005at 219.735 kb on + strand, within CA264_01005at 219.736 kb on - strand, within CA264_01005at 219.802 kb on - strand, within CA264_01005at 219.804 kb on - strand, within CA264_01005at 219.853 kb on - strand, within CA264_01005at 219.899 kb on + strand, within CA264_01005at 219.900 kb on - strand, within CA264_01005at 219.900 kb on - strand, within CA264_01005at 220.047 kb on + strand, within CA264_01005at 220.058 kb on + strand, within CA264_01005at 220.058 kb on + strand, within CA264_01005at 220.091 kb on + strand, within CA264_01005at 220.136 kb on - strand, within CA264_01005at 220.140 kb on - strand, within CA264_01005at 220.140 kb on - strand, within CA264_01005at 220.150 kb on + strand, within CA264_01005at 220.161 kb on + strand, within CA264_01005at 220.164 kb on - strand, within CA264_01005at 220.215 kb on + strand, within CA264_01005at 220.216 kb on - strand, within CA264_01005at 220.216 kb on - strand, within CA264_01005at 220.217 kb on + strand, within CA264_01005at 220.217 kb on + strand, within CA264_01005at 220.217 kb on + strand, within CA264_01005at 220.217 kb on + strand, within CA264_01005at 220.218 kb on - strand, within CA264_01005at 220.218 kb on - strand, within CA264_01005at 220.241 kb on + strandat 220.241 kb on + strandat 220.241 kb on + strandat 220.242 kb on - strandat 220.245 kb on + strandat 220.249 kb on + strandat 220.249 kb on + strandat 220.249 kb on + strandat 220.250 kb on - strandat 220.316 kb on - strandat 220.330 kb on + strandat 220.331 kb on - strandat 220.331 kb on - strandat 220.335 kb on - strandat 220.339 kb on - strandat 220.339 kb on - strandat 220.339 kb on - strandat 220.399 kb on + strandat 220.399 kb on + strandat 220.399 kb on + strandat 220.400 kb on - strandat 220.400 kb on - strandat 220.400 kb on - strandat 220.401 kb on + strandat 220.410 kb on + strandat 220.444 kb on + strandat 220.444 kb on + strandat 220.445 kb on - strandat 220.466 kb on + strandat 220.466 kb on + strandat 220.467 kb on - strandat 220.502 kb on + strandat 220.503 kb on - strandat 220.507 kb on + strandat 220.630 kb on + strand, within CA264_01010at 220.630 kb on + strand, within CA264_01010at 220.636 kb on + strand, within CA264_01010at 220.637 kb on - strand, within CA264_01010at 220.637 kb on - strand, within CA264_01010at 220.641 kb on + strand, within CA264_01010at 220.641 kb on + strand, within CA264_01010at 220.642 kb on - strand, within CA264_01010at 220.642 kb on - strand, within CA264_01010at 220.709 kb on + strand, within CA264_01010at 220.802 kb on - strand, within CA264_01010at 220.813 kb on + strand, within CA264_01010at 220.889 kb on + strand, within CA264_01010at 220.889 kb on + strand, within CA264_01010at 220.890 kb on - strand, within CA264_01010at 220.892 kb on - strand, within CA264_01010at 220.895 kb on - strand, within CA264_01010at 220.943 kb on + strand, within CA264_01010at 220.943 kb on + strand, within CA264_01010at 220.944 kb on - strand, within CA264_01010at 220.944 kb on - strand, within CA264_01010at 220.949 kb on + strand, within CA264_01010at 220.955 kb on + strand, within CA264_01010at 220.959 kb on + strand, within CA264_01010at 221.082 kb on + strand, within CA264_01010at 221.175 kb on - strand, within CA264_01010at 221.178 kb on + strand, within CA264_01010at 221.236 kb on + strand, within CA264_01010at 221.236 kb on + strand, within CA264_01010at 221.237 kb on - strand, within CA264_01010at 221.268 kb on - strand, within CA264_01010at 221.313 kb on - strand, within CA264_01010at 221.334 kb on + strand, within CA264_01010at 221.335 kb on - strand, within CA264_01010at 221.335 kb on - strand, within CA264_01010at 221.335 kb on - strand, within CA264_01010

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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218,214 + CA264_01000 0.28 -0.2
218,215 - CA264_01000 0.28 +0.2
218,253 - CA264_01000 0.31 -0.3
218,313 + CA264_01000 0.35 +1.3
218,313 + CA264_01000 0.35 +0.3
218,314 - CA264_01000 0.35 -0.6
218,314 - CA264_01000 0.35 +0.2
218,314 - CA264_01000 0.35 +0.2
218,325 + CA264_01000 0.36 -0.9
218,373 - CA264_01000 0.40 -1.0
218,373 - CA264_01000 0.40 -0.2
218,373 - CA264_01000 0.40 +0.4
218,388 - CA264_01000 0.41 +0.0
218,388 - CA264_01000 0.41 +0.8
218,608 - CA264_01000 0.58 -0.2
218,706 + CA264_01000 0.65 +0.1
218,741 - CA264_01000 0.68 -0.1
218,826 + CA264_01000 0.75 -0.8
218,828 + CA264_01000 0.75 -0.0
218,828 + CA264_01000 0.75 -1.1
218,872 + CA264_01000 0.78 -0.5
218,879 + CA264_01000 0.79 +0.3
218,974 + CA264_01000 0.86 -0.0
219,001 - CA264_01000 0.88 +0.2
219,009 + CA264_01000 0.88 +0.2
219,010 - CA264_01000 0.89 -0.1
219,164 - +0.4
219,175 - -1.4
219,187 + +0.6
219,219 + +0.5
219,289 - -0.2
219,330 + CA264_01005 0.11 -1.3
219,330 + CA264_01005 0.11 -0.3
219,383 + CA264_01005 0.16 -0.3
219,386 + CA264_01005 0.16 +0.4
219,387 - CA264_01005 0.16 -0.3
219,445 - CA264_01005 0.21 +0.1
219,463 - CA264_01005 0.23 +0.2
219,498 + CA264_01005 0.26 +0.1
219,557 + CA264_01005 0.31 +1.0
219,671 + CA264_01005 0.41 -0.2
219,674 - CA264_01005 0.41 +0.3
219,691 - CA264_01005 0.43 +0.5
219,691 - CA264_01005 0.43 +0.0
219,735 + CA264_01005 0.47 +0.1
219,736 - CA264_01005 0.47 +0.2
219,802 - CA264_01005 0.53 -0.5
219,804 - CA264_01005 0.53 +0.9
219,853 - CA264_01005 0.57 -0.4
219,899 + CA264_01005 0.61 +0.5
219,900 - CA264_01005 0.61 +0.6
219,900 - CA264_01005 0.61 -0.5
220,047 + CA264_01005 0.74 +0.1
220,058 + CA264_01005 0.75 -0.7
220,058 + CA264_01005 0.75 -0.0
220,091 + CA264_01005 0.78 -0.1
220,136 - CA264_01005 0.82 +0.2
220,140 - CA264_01005 0.82 +0.8
220,140 - CA264_01005 0.82 +0.2
220,150 + CA264_01005 0.83 -0.1
220,161 + CA264_01005 0.84 -0.0
220,164 - CA264_01005 0.84 -0.0
220,215 + CA264_01005 0.89 -0.1
220,216 - CA264_01005 0.89 -0.1
220,216 - CA264_01005 0.89 -1.0
220,217 + CA264_01005 0.89 -0.8
220,217 + CA264_01005 0.89 +0.2
220,217 + CA264_01005 0.89 +0.4
220,217 + CA264_01005 0.89 -0.0
220,218 - CA264_01005 0.89 -0.5
220,218 - CA264_01005 0.89 +0.8
220,241 + -0.2
220,241 + -0.8
220,241 + -0.3
220,242 - -0.4
220,245 + +0.5
220,249 + -0.8
220,249 + -0.1
220,249 + +0.9
220,250 - -0.5
220,316 - -0.1
220,330 + +0.3
220,331 - +0.2
220,331 - -0.3
220,335 - -1.0
220,339 - +0.2
220,339 - -0.8
220,339 - +0.3
220,399 + +0.1
220,399 + -0.3
220,399 + +0.3
220,400 - -0.3
220,400 - -0.9
220,400 - -0.4
220,401 + -0.6
220,410 + -0.1
220,444 + -1.6
220,444 + +0.6
220,445 - +0.9
220,466 + +0.0
220,466 + +0.2
220,467 - -0.8
220,502 + +0.0
220,503 - -1.7
220,507 + -0.8
220,630 + CA264_01010 0.14 -0.2
220,630 + CA264_01010 0.14 -1.2
220,636 + CA264_01010 0.15 -0.2
220,637 - CA264_01010 0.15 +0.5
220,637 - CA264_01010 0.15 -0.5
220,641 + CA264_01010 0.15 -0.8
220,641 + CA264_01010 0.15 -0.2
220,642 - CA264_01010 0.15 +0.3
220,642 - CA264_01010 0.15 -0.1
220,709 + CA264_01010 0.21 -0.5
220,802 - CA264_01010 0.29 +0.1
220,813 + CA264_01010 0.30 +1.5
220,889 + CA264_01010 0.37 -0.4
220,889 + CA264_01010 0.37 +0.6
220,890 - CA264_01010 0.37 +0.1
220,892 - CA264_01010 0.37 -0.1
220,895 - CA264_01010 0.37 -0.6
220,943 + CA264_01010 0.42 -0.1
220,943 + CA264_01010 0.42 -0.7
220,944 - CA264_01010 0.42 +0.0
220,944 - CA264_01010 0.42 -0.4
220,949 + CA264_01010 0.42 +1.3
220,955 + CA264_01010 0.43 +1.6
220,959 + CA264_01010 0.43 -1.1
221,082 + CA264_01010 0.54 +0.1
221,175 - CA264_01010 0.62 +0.2
221,178 + CA264_01010 0.62 -0.3
221,236 + CA264_01010 0.67 -0.1
221,236 + CA264_01010 0.67 -0.2
221,237 - CA264_01010 0.67 +0.8
221,268 - CA264_01010 0.70 +0.5
221,313 - CA264_01010 0.74 -0.1
221,334 + CA264_01010 0.76 -0.5
221,335 - CA264_01010 0.76 +1.5
221,335 - CA264_01010 0.76 -0.6
221,335 - CA264_01010 0.76 -0.0

Or see this region's nucleotide sequence