Experiment: D-Mannitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3479 and Atu3480 are separated by 1 nucleotides Atu3480 and Atu3481 overlap by 11 nucleotides Atu3481 and Atu3482 are separated by 140 nucleotides
Atu3479: Atu3479 - 3-methylcrotonyl-CoA carboxylase subunit alpha, at 527,314 to 529,305
Atu3479
Atu3480: Atu3480 - hydroxymethylglutaryl-CoA lyase, at 529,307 to 530,233
Atu3480
Atu3481: Atu3481 - enoyl-CoA hydratase, at 530,223 to 530,999
Atu3481
Atu3482: Atu3482 - pantoate--beta-alanine ligase, at 531,140 to 532,018
Atu3482
Position (kb) 530
531 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 529.268 kb on + strand at 529.276 kb on - strand at 529.447 kb on - strand, within Atu3480 at 529.447 kb on - strand, within Atu3480 at 529.518 kb on - strand, within Atu3480 at 529.530 kb on - strand, within Atu3480 at 529.672 kb on - strand, within Atu3480 at 529.693 kb on + strand, within Atu3480 at 529.816 kb on - strand, within Atu3480 at 529.877 kb on + strand, within Atu3480 at 529.938 kb on + strand, within Atu3480 at 529.938 kb on + strand, within Atu3480 at 529.982 kb on + strand, within Atu3480 at 530.036 kb on - strand, within Atu3480 at 530.206 kb on + strand at 530.493 kb on + strand, within Atu3481 at 530.520 kb on + strand, within Atu3481 at 530.533 kb on + strand, within Atu3481 at 530.703 kb on - strand, within Atu3481 at 530.737 kb on + strand, within Atu3481 at 530.786 kb on + strand, within Atu3481 at 530.993 kb on + strand at 531.060 kb on - strand at 531.092 kb on + strand at 531.223 kb on + strand at 531.276 kb on - strand, within Atu3482 at 531.422 kb on - strand, within Atu3482 at 531.446 kb on + strand, within Atu3482 at 531.586 kb on + strand, within Atu3482 at 531.628 kb on - strand, within Atu3482 at 531.628 kb on - strand, within Atu3482 at 531.628 kb on - strand, within Atu3482 at 531.710 kb on - strand, within Atu3482 at 531.772 kb on + strand, within Atu3482 at 531.923 kb on - strand, within Atu3482
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannitol (C) remove 529,268 + +0.4 529,276 - -0.3 529,447 - Atu3480 0.15 +0.2 529,447 - Atu3480 0.15 +0.0 529,518 - Atu3480 0.23 +0.2 529,530 - Atu3480 0.24 +0.2 529,672 - Atu3480 0.39 +0.3 529,693 + Atu3480 0.42 -0.1 529,816 - Atu3480 0.55 +0.1 529,877 + Atu3480 0.61 +0.1 529,938 + Atu3480 0.68 -0.3 529,938 + Atu3480 0.68 +0.3 529,982 + Atu3480 0.73 -0.2 530,036 - Atu3480 0.79 -0.9 530,206 + +0.1 530,493 + Atu3481 0.35 -0.0 530,520 + Atu3481 0.38 -0.1 530,533 + Atu3481 0.40 +0.8 530,703 - Atu3481 0.62 +0.2 530,737 + Atu3481 0.66 +0.1 530,786 + Atu3481 0.72 -0.0 530,993 + +0.1 531,060 - +0.2 531,092 + -0.3 531,223 + -3.0 531,276 - Atu3482 0.15 -6.4 531,422 - Atu3482 0.32 -4.3 531,446 + Atu3482 0.35 -4.2 531,586 + Atu3482 0.51 -4.0 531,628 - Atu3482 0.56 -6.1 531,628 - Atu3482 0.56 -3.5 531,628 - Atu3482 0.56 -4.6 531,710 - Atu3482 0.65 -4.5 531,772 + Atu3482 0.72 -4.6 531,923 - Atu3482 0.89 -3.7
Or see this region's nucleotide sequence