Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS23115

Experiment: 150_nonmag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS02255 and AMB_RS02260 are separated by 92 nucleotidesAMB_RS02260 and AMB_RS23115 are separated by 9 nucleotidesAMB_RS23115 and AMB_RS02270 are separated by 5 nucleotidesAMB_RS02270 and AMB_RS02275 are separated by 15 nucleotides AMB_RS02255: AMB_RS02255 - hypothetical protein, at 480,952 to 481,497 _RS02255 AMB_RS02260: AMB_RS02260 - hypothetical protein, at 481,590 to 482,405 _RS02260 AMB_RS23115: AMB_RS23115 - HAMP domain-containing protein, at 482,415 to 484,079 _RS23115 AMB_RS02270: AMB_RS02270 - hypothetical protein, at 484,085 to 484,429 _RS02270 AMB_RS02275: AMB_RS02275 - hypothetical protein, at 484,445 to 485,080 _RS02275 Position (kb) 482 483 484 485Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 481.495 kb on + strandat 481.552 kb on + strandat 481.553 kb on - strandat 481.553 kb on - strandat 481.740 kb on + strand, within AMB_RS02260at 481.743 kb on + strand, within AMB_RS02260at 481.743 kb on + strand, within AMB_RS02260at 481.743 kb on + strand, within AMB_RS02260at 481.743 kb on + strand, within AMB_RS02260at 481.743 kb on + strand, within AMB_RS02260at 481.744 kb on - strand, within AMB_RS02260at 481.744 kb on - strand, within AMB_RS02260at 481.744 kb on - strand, within AMB_RS02260at 481.744 kb on - strand, within AMB_RS02260at 481.745 kb on + strand, within AMB_RS02260at 481.745 kb on + strand, within AMB_RS02260at 481.745 kb on + strand, within AMB_RS02260at 481.944 kb on + strand, within AMB_RS02260at 481.944 kb on + strand, within AMB_RS02260at 481.944 kb on + strand, within AMB_RS02260at 481.944 kb on + strand, within AMB_RS02260at 481.945 kb on - strand, within AMB_RS02260at 481.991 kb on + strand, within AMB_RS02260at 481.992 kb on - strand, within AMB_RS02260at 481.998 kb on + strand, within AMB_RS02260at 481.998 kb on + strand, within AMB_RS02260at 481.999 kb on - strand, within AMB_RS02260at 481.999 kb on - strand, within AMB_RS02260at 481.999 kb on - strand, within AMB_RS02260at 481.999 kb on - strand, within AMB_RS02260at 482.035 kb on - strand, within AMB_RS02260at 482.035 kb on - strand, within AMB_RS02260at 482.092 kb on - strand, within AMB_RS02260at 482.117 kb on + strand, within AMB_RS02260at 482.147 kb on + strand, within AMB_RS02260at 482.236 kb on - strand, within AMB_RS02260at 482.281 kb on - strand, within AMB_RS02260at 482.281 kb on - strand, within AMB_RS02260at 482.308 kb on - strand, within AMB_RS02260at 482.394 kb on + strandat 482.395 kb on - strandat 482.395 kb on - strandat 482.395 kb on - strandat 482.486 kb on - strandat 482.600 kb on - strand, within AMB_RS23115at 482.653 kb on - strand, within AMB_RS23115at 482.653 kb on - strand, within AMB_RS23115at 483.094 kb on + strand, within AMB_RS23115at 483.094 kb on + strand, within AMB_RS23115at 483.094 kb on + strand, within AMB_RS23115at 483.094 kb on + strand, within AMB_RS23115at 483.094 kb on + strand, within AMB_RS23115at 483.094 kb on + strand, within AMB_RS23115at 483.095 kb on - strand, within AMB_RS23115at 483.095 kb on - strand, within AMB_RS23115at 483.095 kb on - strand, within AMB_RS23115at 483.097 kb on + strand, within AMB_RS23115at 483.098 kb on - strand, within AMB_RS23115at 483.098 kb on - strand, within AMB_RS23115at 483.098 kb on - strand, within AMB_RS23115at 483.128 kb on + strand, within AMB_RS23115at 483.129 kb on - strand, within AMB_RS23115at 483.130 kb on + strand, within AMB_RS23115at 483.130 kb on + strand, within AMB_RS23115at 483.130 kb on + strand, within AMB_RS23115at 483.130 kb on + strand, within AMB_RS23115at 483.130 kb on + strand, within AMB_RS23115at 483.130 kb on + strand, within AMB_RS23115at 483.130 kb on + strand, within AMB_RS23115at 483.130 kb on + strand, within AMB_RS23115at 483.130 kb on + strand, within AMB_RS23115at 483.130 kb on + strand, within AMB_RS23115at 483.130 kb on + strand, within AMB_RS23115at 483.130 kb on + strand, within AMB_RS23115at 483.131 kb on - strand, within AMB_RS23115at 483.131 kb on - strand, within AMB_RS23115at 483.131 kb on - strand, within AMB_RS23115at 483.131 kb on - strand, within AMB_RS23115at 483.131 kb on - strand, within AMB_RS23115at 483.131 kb on - strand, within AMB_RS23115at 483.131 kb on - strand, within AMB_RS23115at 483.131 kb on - strand, within AMB_RS23115at 483.131 kb on - strand, within AMB_RS23115at 483.131 kb on - strand, within AMB_RS23115at 483.541 kb on + strand, within AMB_RS23115at 483.541 kb on + strand, within AMB_RS23115at 483.541 kb on + strand, within AMB_RS23115at 483.542 kb on - strand, within AMB_RS23115at 483.542 kb on - strand, within AMB_RS23115at 483.619 kb on + strand, within AMB_RS23115at 483.620 kb on - strand, within AMB_RS23115at 483.620 kb on - strand, within AMB_RS23115at 483.620 kb on - strand, within AMB_RS23115at 483.716 kb on - strand, within AMB_RS23115at 483.841 kb on + strand, within AMB_RS23115at 483.842 kb on - strand, within AMB_RS23115at 483.892 kb on + strand, within AMB_RS23115at 483.893 kb on - strand, within AMB_RS23115at 484.326 kb on + strand, within AMB_RS02270at 484.326 kb on + strand, within AMB_RS02270at 484.327 kb on - strand, within AMB_RS02270at 484.327 kb on - strand, within AMB_RS02270at 484.446 kb on + strandat 484.446 kb on + strandat 484.446 kb on + strandat 484.446 kb on + strandat 484.447 kb on - strandat 484.447 kb on - strandat 484.447 kb on - strandat 484.447 kb on - strandat 484.447 kb on - strandat 484.447 kb on - strandat 484.527 kb on + strand, within AMB_RS02275at 484.528 kb on - strand, within AMB_RS02275at 484.599 kb on + strand, within AMB_RS02275at 484.600 kb on - strand, within AMB_RS02275at 484.600 kb on - strand, within AMB_RS02275at 484.600 kb on - strand, within AMB_RS02275at 484.755 kb on + strand, within AMB_RS02275at 484.756 kb on - strand, within AMB_RS02275at 484.756 kb on - strand, within AMB_RS02275at 484.756 kb on - strand, within AMB_RS02275at 484.756 kb on - strand, within AMB_RS02275at 484.791 kb on + strand, within AMB_RS02275at 484.791 kb on + strand, within AMB_RS02275at 484.791 kb on + strand, within AMB_RS02275at 484.791 kb on + strand, within AMB_RS02275at 484.792 kb on - strand, within AMB_RS02275at 484.792 kb on - strand, within AMB_RS02275at 484.792 kb on - strand, within AMB_RS02275at 484.792 kb on - strand, within AMB_RS02275at 484.792 kb on - strand, within AMB_RS02275at 484.872 kb on + strand, within AMB_RS02275at 484.873 kb on - strand, within AMB_RS02275at 484.873 kb on - strand, within AMB_RS02275at 484.873 kb on - strand, within AMB_RS02275at 484.895 kb on + strand, within AMB_RS02275

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_nonmag_1
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481,495 + -1.6
481,552 + +0.2
481,553 - +0.4
481,553 - -0.8
481,740 + AMB_RS02260 0.18 -0.1
481,743 + AMB_RS02260 0.19 +0.1
481,743 + AMB_RS02260 0.19 +2.0
481,743 + AMB_RS02260 0.19 +0.6
481,743 + AMB_RS02260 0.19 -0.2
481,743 + AMB_RS02260 0.19 -0.3
481,744 - AMB_RS02260 0.19 -1.3
481,744 - AMB_RS02260 0.19 +0.1
481,744 - AMB_RS02260 0.19 -0.2
481,744 - AMB_RS02260 0.19 -1.2
481,745 + AMB_RS02260 0.19 -0.1
481,745 + AMB_RS02260 0.19 -0.6
481,745 + AMB_RS02260 0.19 +0.8
481,944 + AMB_RS02260 0.43 +0.4
481,944 + AMB_RS02260 0.43 -1.6
481,944 + AMB_RS02260 0.43 -0.1
481,944 + AMB_RS02260 0.43 -0.2
481,945 - AMB_RS02260 0.44 +0.6
481,991 + AMB_RS02260 0.49 -0.2
481,992 - AMB_RS02260 0.49 -0.5
481,998 + AMB_RS02260 0.50 +0.4
481,998 + AMB_RS02260 0.50 -1.1
481,999 - AMB_RS02260 0.50 -1.9
481,999 - AMB_RS02260 0.50 +0.0
481,999 - AMB_RS02260 0.50 +0.3
481,999 - AMB_RS02260 0.50 -0.1
482,035 - AMB_RS02260 0.55 -0.5
482,035 - AMB_RS02260 0.55 -0.0
482,092 - AMB_RS02260 0.62 +0.3
482,117 + AMB_RS02260 0.65 -0.2
482,147 + AMB_RS02260 0.68 -0.6
482,236 - AMB_RS02260 0.79 +0.0
482,281 - AMB_RS02260 0.85 +0.4
482,281 - AMB_RS02260 0.85 +1.0
482,308 - AMB_RS02260 0.88 +0.1
482,394 + -0.4
482,395 - +0.2
482,395 - +0.3
482,395 - -0.6
482,486 - -0.2
482,600 - AMB_RS23115 0.11 -0.1
482,653 - AMB_RS23115 0.14 -0.2
482,653 - AMB_RS23115 0.14 +0.4
483,094 + AMB_RS23115 0.41 -0.0
483,094 + AMB_RS23115 0.41 -0.4
483,094 + AMB_RS23115 0.41 -0.6
483,094 + AMB_RS23115 0.41 -0.6
483,094 + AMB_RS23115 0.41 +0.3
483,094 + AMB_RS23115 0.41 +0.2
483,095 - AMB_RS23115 0.41 +0.2
483,095 - AMB_RS23115 0.41 +1.3
483,095 - AMB_RS23115 0.41 -0.4
483,097 + AMB_RS23115 0.41 -0.2
483,098 - AMB_RS23115 0.41 -0.2
483,098 - AMB_RS23115 0.41 -0.1
483,098 - AMB_RS23115 0.41 +0.9
483,128 + AMB_RS23115 0.43 +0.2
483,129 - AMB_RS23115 0.43 -1.6
483,130 + AMB_RS23115 0.43 -0.4
483,130 + AMB_RS23115 0.43 -0.8
483,130 + AMB_RS23115 0.43 -0.1
483,130 + AMB_RS23115 0.43 +0.4
483,130 + AMB_RS23115 0.43 +0.4
483,130 + AMB_RS23115 0.43 -0.1
483,130 + AMB_RS23115 0.43 +0.1
483,130 + AMB_RS23115 0.43 -1.3
483,130 + AMB_RS23115 0.43 -0.5
483,130 + AMB_RS23115 0.43 +0.0
483,130 + AMB_RS23115 0.43 +0.7
483,130 + AMB_RS23115 0.43 +1.0
483,131 - AMB_RS23115 0.43 -0.2
483,131 - AMB_RS23115 0.43 +0.2
483,131 - AMB_RS23115 0.43 +0.1
483,131 - AMB_RS23115 0.43 -1.0
483,131 - AMB_RS23115 0.43 +0.4
483,131 - AMB_RS23115 0.43 +1.1
483,131 - AMB_RS23115 0.43 -0.3
483,131 - AMB_RS23115 0.43 -0.3
483,131 - AMB_RS23115 0.43 -0.3
483,131 - AMB_RS23115 0.43 -0.4
483,541 + AMB_RS23115 0.68 -1.3
483,541 + AMB_RS23115 0.68 +0.3
483,541 + AMB_RS23115 0.68 -0.7
483,542 - AMB_RS23115 0.68 +0.4
483,542 - AMB_RS23115 0.68 -0.0
483,619 + AMB_RS23115 0.72 -0.6
483,620 - AMB_RS23115 0.72 -0.2
483,620 - AMB_RS23115 0.72 -1.0
483,620 - AMB_RS23115 0.72 -3.3
483,716 - AMB_RS23115 0.78 -0.4
483,841 + AMB_RS23115 0.86 -0.9
483,842 - AMB_RS23115 0.86 +0.1
483,892 + AMB_RS23115 0.89 -0.4
483,893 - AMB_RS23115 0.89 -0.6
484,326 + AMB_RS02270 0.70 -1.0
484,326 + AMB_RS02270 0.70 +0.3
484,327 - AMB_RS02270 0.70 -0.7
484,327 - AMB_RS02270 0.70 -0.4
484,446 + -0.3
484,446 + +0.2
484,446 + -0.1
484,446 + +0.0
484,447 - -0.5
484,447 - -0.9
484,447 - +0.3
484,447 - -0.1
484,447 - -1.4
484,447 - -0.6
484,527 + AMB_RS02275 0.13 -1.3
484,528 - AMB_RS02275 0.13 +0.1
484,599 + AMB_RS02275 0.24 +0.1
484,600 - AMB_RS02275 0.24 -0.7
484,600 - AMB_RS02275 0.24 +0.1
484,600 - AMB_RS02275 0.24 -0.6
484,755 + AMB_RS02275 0.49 -0.4
484,756 - AMB_RS02275 0.49 +0.9
484,756 - AMB_RS02275 0.49 -1.0
484,756 - AMB_RS02275 0.49 +0.4
484,756 - AMB_RS02275 0.49 +0.7
484,791 + AMB_RS02275 0.54 -1.7
484,791 + AMB_RS02275 0.54 +0.5
484,791 + AMB_RS02275 0.54 -0.2
484,791 + AMB_RS02275 0.54 -0.3
484,792 - AMB_RS02275 0.55 -0.3
484,792 - AMB_RS02275 0.55 -1.4
484,792 - AMB_RS02275 0.55 +0.1
484,792 - AMB_RS02275 0.55 -0.6
484,792 - AMB_RS02275 0.55 -0.6
484,872 + AMB_RS02275 0.67 -0.1
484,873 - AMB_RS02275 0.67 -0.0
484,873 - AMB_RS02275 0.67 -0.3
484,873 - AMB_RS02275 0.67 -0.1
484,895 + AMB_RS02275 0.71 -0.2

Or see this region's nucleotide sequence