Experiment: 150_nonmag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS22510 and AMB_RS22515 are separated by 5 nucleotides AMB_RS22515 and AMB_RS22520 overlap by 2 nucleotides AMB_RS22520 and AMB_RS22525 are separated by 93 nucleotides
AMB_RS22510: AMB_RS22510 - alanine--glyoxylate aminotransferase family protein, at 4,861,670 to 4,862,842
_RS22510
AMB_RS22515: AMB_RS22515 - DUF2125 domain-containing protein, at 4,862,848 to 4,863,900
_RS22515
AMB_RS22520: AMB_RS22520 - gamma-glutamylcyclotransferase, at 4,863,899 to 4,864,480
_RS22520
AMB_RS22525: AMB_RS22525 - UTP--glucose-1-phosphate uridylyltransferase, at 4,864,574 to 4,865,449
_RS22525
Position (kb) 4862
4863
4864 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4862.071 kb on - strand, within AMB_RS22510 at 4862.100 kb on + strand, within AMB_RS22510 at 4862.100 kb on + strand, within AMB_RS22510 at 4862.100 kb on + strand, within AMB_RS22510 at 4862.101 kb on - strand, within AMB_RS22510 at 4862.101 kb on - strand, within AMB_RS22510 at 4862.128 kb on - strand, within AMB_RS22510 at 4862.128 kb on - strand, within AMB_RS22510 at 4862.265 kb on + strand, within AMB_RS22510 at 4862.266 kb on - strand, within AMB_RS22510 at 4862.924 kb on + strand at 4862.924 kb on + strand at 4862.925 kb on - strand at 4863.404 kb on + strand, within AMB_RS22515 at 4863.404 kb on + strand, within AMB_RS22515 at 4863.404 kb on + strand, within AMB_RS22515 at 4863.404 kb on + strand, within AMB_RS22515 at 4863.404 kb on + strand, within AMB_RS22515 at 4863.404 kb on + strand, within AMB_RS22515 at 4863.404 kb on + strand, within AMB_RS22515 at 4863.404 kb on + strand, within AMB_RS22515 at 4863.405 kb on - strand, within AMB_RS22515 at 4863.405 kb on - strand, within AMB_RS22515 at 4863.405 kb on - strand, within AMB_RS22515 at 4863.405 kb on - strand, within AMB_RS22515 at 4863.405 kb on - strand, within AMB_RS22515 at 4863.405 kb on - strand, within AMB_RS22515 at 4863.405 kb on - strand, within AMB_RS22515 at 4863.405 kb on - strand, within AMB_RS22515 at 4863.405 kb on - strand, within AMB_RS22515 at 4863.405 kb on - strand, within AMB_RS22515 at 4863.824 kb on + strand at 4863.824 kb on + strand at 4863.825 kb on - strand at 4863.825 kb on - strand at 4863.935 kb on - strand at 4864.199 kb on + strand, within AMB_RS22520 at 4864.199 kb on + strand, within AMB_RS22520 at 4864.200 kb on - strand, within AMB_RS22520 at 4864.200 kb on - strand, within AMB_RS22520 at 4864.226 kb on + strand, within AMB_RS22520 at 4864.226 kb on + strand, within AMB_RS22520 at 4864.226 kb on + strand, within AMB_RS22520 at 4864.226 kb on + strand, within AMB_RS22520 at 4864.227 kb on - strand, within AMB_RS22520 at 4864.227 kb on - strand, within AMB_RS22520 at 4864.227 kb on - strand, within AMB_RS22520 at 4864.227 kb on - strand, within AMB_RS22520 at 4864.227 kb on - strand, within AMB_RS22520 at 4864.313 kb on + strand, within AMB_RS22520 at 4864.313 kb on + strand, within AMB_RS22520 at 4864.314 kb on - strand, within AMB_RS22520 at 4864.354 kb on - strand, within AMB_RS22520 at 4864.391 kb on + strand, within AMB_RS22520 at 4864.392 kb on - strand, within AMB_RS22520 at 4864.471 kb on + strand at 4864.478 kb on + strand at 4864.685 kb on + strand, within AMB_RS22525 at 4864.686 kb on - strand, within AMB_RS22525
Per-strain Table
Position Strand Gene LocusTag Fraction 150_nonmag_1 remove 4,862,071 - AMB_RS22510 0.34 -0.3 4,862,100 + AMB_RS22510 0.37 +0.7 4,862,100 + AMB_RS22510 0.37 +0.5 4,862,100 + AMB_RS22510 0.37 +0.4 4,862,101 - AMB_RS22510 0.37 -0.3 4,862,101 - AMB_RS22510 0.37 +0.6 4,862,128 - AMB_RS22510 0.39 -3.1 4,862,128 - AMB_RS22510 0.39 -2.5 4,862,265 + AMB_RS22510 0.51 -0.3 4,862,266 - AMB_RS22510 0.51 +0.5 4,862,924 + -0.9 4,862,924 + -0.0 4,862,925 - +0.1 4,863,404 + AMB_RS22515 0.53 -0.6 4,863,404 + AMB_RS22515 0.53 -0.0 4,863,404 + AMB_RS22515 0.53 +0.0 4,863,404 + AMB_RS22515 0.53 -0.4 4,863,404 + AMB_RS22515 0.53 +0.2 4,863,404 + AMB_RS22515 0.53 -0.8 4,863,404 + AMB_RS22515 0.53 -0.7 4,863,404 + AMB_RS22515 0.53 -0.5 4,863,405 - AMB_RS22515 0.53 -0.4 4,863,405 - AMB_RS22515 0.53 +2.1 4,863,405 - AMB_RS22515 0.53 -0.3 4,863,405 - AMB_RS22515 0.53 -0.3 4,863,405 - AMB_RS22515 0.53 -1.3 4,863,405 - AMB_RS22515 0.53 -0.1 4,863,405 - AMB_RS22515 0.53 -0.6 4,863,405 - AMB_RS22515 0.53 -0.4 4,863,405 - AMB_RS22515 0.53 -0.3 4,863,405 - AMB_RS22515 0.53 +0.5 4,863,824 + +0.6 4,863,824 + +0.1 4,863,825 - +0.5 4,863,825 - +0.3 4,863,935 - -0.4 4,864,199 + AMB_RS22520 0.52 +0.2 4,864,199 + AMB_RS22520 0.52 -0.9 4,864,200 - AMB_RS22520 0.52 +1.2 4,864,200 - AMB_RS22520 0.52 +0.3 4,864,226 + AMB_RS22520 0.56 +0.2 4,864,226 + AMB_RS22520 0.56 -0.7 4,864,226 + AMB_RS22520 0.56 -2.1 4,864,226 + AMB_RS22520 0.56 +0.2 4,864,227 - AMB_RS22520 0.56 -1.2 4,864,227 - AMB_RS22520 0.56 -0.7 4,864,227 - AMB_RS22520 0.56 +0.2 4,864,227 - AMB_RS22520 0.56 +0.5 4,864,227 - AMB_RS22520 0.56 +0.1 4,864,313 + AMB_RS22520 0.71 -1.8 4,864,313 + AMB_RS22520 0.71 -1.0 4,864,314 - AMB_RS22520 0.71 +0.4 4,864,354 - AMB_RS22520 0.78 -0.3 4,864,391 + AMB_RS22520 0.85 +0.0 4,864,392 - AMB_RS22520 0.85 -0.3 4,864,471 + -0.4 4,864,478 + +0.2 4,864,685 + AMB_RS22525 0.13 +0.5 4,864,686 - AMB_RS22525 0.13 +1.2
Or see this region's nucleotide sequence