Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS22070

Experiment: 150_nonmag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS22065 and AMB_RS22070 are separated by 225 nucleotidesAMB_RS22070 and AMB_RS22075 are separated by 13 nucleotidesAMB_RS22075 and AMB_RS23810 are separated by 13 nucleotidesAMB_RS23810 and AMB_RS22080 are separated by 2 nucleotides AMB_RS22065: AMB_RS22065 - class I SAM-dependent rRNA methyltransferase, at 4,764,512 to 4,765,717 _RS22065 AMB_RS22070: AMB_RS22070 - cytochrome-c oxidase, cbb3-type subunit I, at 4,765,943 to 4,767,397 _RS22070 AMB_RS22075: AMB_RS22075 - cytochrome-c oxidase, cbb3-type subunit II, at 4,767,411 to 4,768,133 _RS22075 AMB_RS23810: AMB_RS23810 - CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone, at 4,768,147 to 4,768,308 _RS23810 AMB_RS22080: AMB_RS22080 - cytochrome-c oxidase, cbb3-type subunit III, at 4,768,311 to 4,769,171 _RS22080 Position (kb) 4765 4766 4767 4768Strain fitness (log2 ratio) -2 -1 0 1at 4765.005 kb on + strand, within AMB_RS22065at 4765.005 kb on + strand, within AMB_RS22065at 4765.005 kb on + strand, within AMB_RS22065at 4765.006 kb on - strand, within AMB_RS22065at 4765.006 kb on - strand, within AMB_RS22065at 4765.009 kb on + strand, within AMB_RS22065at 4765.009 kb on + strand, within AMB_RS22065at 4765.009 kb on + strand, within AMB_RS22065at 4765.009 kb on + strand, within AMB_RS22065at 4765.009 kb on + strand, within AMB_RS22065at 4765.009 kb on + strand, within AMB_RS22065at 4765.009 kb on + strand, within AMB_RS22065at 4765.009 kb on + strand, within AMB_RS22065at 4765.009 kb on + strand, within AMB_RS22065at 4765.009 kb on + strand, within AMB_RS22065at 4765.010 kb on - strand, within AMB_RS22065at 4765.010 kb on - strand, within AMB_RS22065at 4765.010 kb on - strand, within AMB_RS22065at 4765.010 kb on - strand, within AMB_RS22065at 4765.010 kb on - strand, within AMB_RS22065at 4765.010 kb on - strand, within AMB_RS22065at 4765.010 kb on - strand, within AMB_RS22065at 4765.010 kb on - strand, within AMB_RS22065at 4765.010 kb on - strand, within AMB_RS22065at 4765.010 kb on - strand, within AMB_RS22065at 4765.010 kb on - strand, within AMB_RS22065at 4765.010 kb on - strand, within AMB_RS22065at 4765.011 kb on + strand, within AMB_RS22065at 4765.011 kb on + strand, within AMB_RS22065at 4765.011 kb on + strand, within AMB_RS22065at 4765.011 kb on + strand, within AMB_RS22065at 4765.012 kb on - strand, within AMB_RS22065at 4765.012 kb on - strand, within AMB_RS22065at 4765.306 kb on + strand, within AMB_RS22065at 4765.306 kb on + strand, within AMB_RS22065at 4765.307 kb on - strand, within AMB_RS22065at 4765.307 kb on - strand, within AMB_RS22065at 4765.307 kb on - strand, within AMB_RS22065at 4765.307 kb on - strand, within AMB_RS22065at 4765.729 kb on + strandat 4765.730 kb on - strandat 4765.788 kb on + strandat 4765.788 kb on + strandat 4765.788 kb on + strandat 4765.788 kb on + strandat 4765.788 kb on + strandat 4765.788 kb on + strandat 4765.790 kb on + strandat 4765.790 kb on + strandat 4765.790 kb on + strandat 4765.790 kb on + strandat 4765.790 kb on + strandat 4765.790 kb on + strandat 4765.790 kb on + strandat 4765.790 kb on + strandat 4765.822 kb on + strandat 4765.822 kb on + strandat 4765.822 kb on + strandat 4765.822 kb on + strandat 4765.822 kb on + strandat 4765.822 kb on + strandat 4768.131 kb on + strandat 4768.131 kb on + strandat 4768.131 kb on + strandat 4768.131 kb on + strandat 4768.306 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_nonmag_1
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4,765,005 + AMB_RS22065 0.41 -0.7
4,765,005 + AMB_RS22065 0.41 +0.6
4,765,005 + AMB_RS22065 0.41 -0.3
4,765,006 - AMB_RS22065 0.41 -0.2
4,765,006 - AMB_RS22065 0.41 +0.4
4,765,009 + AMB_RS22065 0.41 -0.0
4,765,009 + AMB_RS22065 0.41 +0.7
4,765,009 + AMB_RS22065 0.41 +0.2
4,765,009 + AMB_RS22065 0.41 -1.0
4,765,009 + AMB_RS22065 0.41 -1.7
4,765,009 + AMB_RS22065 0.41 -0.5
4,765,009 + AMB_RS22065 0.41 -0.7
4,765,009 + AMB_RS22065 0.41 -0.4
4,765,009 + AMB_RS22065 0.41 -1.0
4,765,009 + AMB_RS22065 0.41 +0.1
4,765,010 - AMB_RS22065 0.41 +0.6
4,765,010 - AMB_RS22065 0.41 -0.3
4,765,010 - AMB_RS22065 0.41 -0.1
4,765,010 - AMB_RS22065 0.41 -0.3
4,765,010 - AMB_RS22065 0.41 +0.2
4,765,010 - AMB_RS22065 0.41 +0.2
4,765,010 - AMB_RS22065 0.41 -0.1
4,765,010 - AMB_RS22065 0.41 -0.3
4,765,010 - AMB_RS22065 0.41 -0.3
4,765,010 - AMB_RS22065 0.41 +0.2
4,765,010 - AMB_RS22065 0.41 -0.5
4,765,010 - AMB_RS22065 0.41 +0.0
4,765,011 + AMB_RS22065 0.41 +0.2
4,765,011 + AMB_RS22065 0.41 +0.1
4,765,011 + AMB_RS22065 0.41 -0.1
4,765,011 + AMB_RS22065 0.41 -0.4
4,765,012 - AMB_RS22065 0.41 -0.9
4,765,012 - AMB_RS22065 0.41 -0.8
4,765,306 + AMB_RS22065 0.66 -0.8
4,765,306 + AMB_RS22065 0.66 +0.2
4,765,307 - AMB_RS22065 0.66 +0.0
4,765,307 - AMB_RS22065 0.66 -0.3
4,765,307 - AMB_RS22065 0.66 -0.5
4,765,307 - AMB_RS22065 0.66 -0.8
4,765,729 + +1.4
4,765,730 - +1.0
4,765,788 + -0.6
4,765,788 + -0.5
4,765,788 + -0.6
4,765,788 + +0.3
4,765,788 + +0.3
4,765,788 + +0.0
4,765,790 + -0.3
4,765,790 + +0.0
4,765,790 + -1.0
4,765,790 + -0.1
4,765,790 + +0.2
4,765,790 + +0.3
4,765,790 + +0.2
4,765,790 + -0.3
4,765,822 + +0.4
4,765,822 + -0.1
4,765,822 + +0.3
4,765,822 + -0.1
4,765,822 + +0.3
4,765,822 + +0.2
4,768,131 + -1.8
4,768,131 + -0.8
4,768,131 + +0.2
4,768,131 + -0.5
4,768,306 + -2.1

Or see this region's nucleotide sequence