Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS20630

Experiment: 150_nonmag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS20625 and AMB_RS20630 overlap by 4 nucleotidesAMB_RS20630 and AMB_RS20635 are separated by 1 nucleotidesAMB_RS20635 and AMB_RS20640 are separated by 20 nucleotides AMB_RS20625: AMB_RS20625 - GTPase ObgE, at 4,481,414 to 4,482,652 _RS20625 AMB_RS20630: AMB_RS20630 - glutamate 5-kinase, at 4,482,649 to 4,483,761 _RS20630 AMB_RS20635: AMB_RS20635 - N-acetylmuramoyl-L-alanine amidase, at 4,483,763 to 4,484,479 _RS20635 AMB_RS20640: AMB_RS20640 - glutamate-5-semialdehyde dehydrogenase, at 4,484,500 to 4,485,768 _RS20640 Position (kb) 4482 4483 4484Strain fitness (log2 ratio) -1 0 1at 4484.078 kb on + strand, within AMB_RS20635at 4484.078 kb on + strand, within AMB_RS20635at 4484.078 kb on + strand, within AMB_RS20635at 4484.078 kb on + strand, within AMB_RS20635at 4484.078 kb on + strand, within AMB_RS20635at 4484.079 kb on - strand, within AMB_RS20635at 4484.079 kb on - strand, within AMB_RS20635at 4484.079 kb on - strand, within AMB_RS20635at 4484.079 kb on - strand, within AMB_RS20635at 4484.079 kb on - strand, within AMB_RS20635at 4484.079 kb on - strand, within AMB_RS20635at 4484.303 kb on + strand, within AMB_RS20635at 4484.303 kb on + strand, within AMB_RS20635at 4484.309 kb on + strand, within AMB_RS20635at 4484.310 kb on - strand, within AMB_RS20635

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_nonmag_1
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4,484,078 + AMB_RS20635 0.44 -0.2
4,484,078 + AMB_RS20635 0.44 +0.5
4,484,078 + AMB_RS20635 0.44 -0.6
4,484,078 + AMB_RS20635 0.44 -0.0
4,484,078 + AMB_RS20635 0.44 -0.2
4,484,079 - AMB_RS20635 0.44 +0.5
4,484,079 - AMB_RS20635 0.44 -1.1
4,484,079 - AMB_RS20635 0.44 +0.7
4,484,079 - AMB_RS20635 0.44 -0.9
4,484,079 - AMB_RS20635 0.44 +0.0
4,484,079 - AMB_RS20635 0.44 +0.5
4,484,303 + AMB_RS20635 0.75 -1.3
4,484,303 + AMB_RS20635 0.75 -0.5
4,484,309 + AMB_RS20635 0.76 +0.7
4,484,310 - AMB_RS20635 0.76 +0.5

Or see this region's nucleotide sequence