Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS19710

Experiment: 150_nonmag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS19705 and AMB_RS19710 are separated by 118 nucleotidesAMB_RS19710 and AMB_RS19715 are separated by 6 nucleotides AMB_RS19705: AMB_RS19705 - GGDEF domain-containing protein, at 4,303,434 to 4,305,110 _RS19705 AMB_RS19710: AMB_RS19710 - pyrimidine 5'-nucleotidase, at 4,305,229 to 4,305,918 _RS19710 AMB_RS19715: AMB_RS19715 - LysM domain-containing protein, at 4,305,925 to 4,306,935 _RS19715 Position (kb) 4305 4306Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4304.356 kb on + strand, within AMB_RS19705at 4304.356 kb on + strand, within AMB_RS19705at 4304.357 kb on - strand, within AMB_RS19705at 4304.357 kb on - strand, within AMB_RS19705at 4304.357 kb on - strand, within AMB_RS19705at 4304.529 kb on + strand, within AMB_RS19705at 4304.529 kb on + strand, within AMB_RS19705at 4304.529 kb on + strand, within AMB_RS19705at 4304.529 kb on + strand, within AMB_RS19705at 4304.529 kb on + strand, within AMB_RS19705at 4304.530 kb on - strand, within AMB_RS19705at 4304.530 kb on - strand, within AMB_RS19705at 4304.530 kb on - strand, within AMB_RS19705at 4304.530 kb on - strand, within AMB_RS19705at 4304.735 kb on - strand, within AMB_RS19705at 4304.735 kb on - strand, within AMB_RS19705at 4304.735 kb on - strand, within AMB_RS19705at 4305.142 kb on + strandat 4305.142 kb on + strandat 4305.142 kb on + strandat 4305.142 kb on + strandat 4305.143 kb on - strandat 4305.149 kb on + strandat 4305.149 kb on + strandat 4305.154 kb on + strandat 4305.154 kb on + strandat 4305.154 kb on + strandat 4305.155 kb on - strandat 4305.155 kb on - strandat 4305.155 kb on - strandat 4305.155 kb on - strandat 4305.160 kb on + strandat 4305.161 kb on - strandat 4305.161 kb on - strandat 4305.161 kb on - strandat 4305.215 kb on + strandat 4305.216 kb on - strandat 4305.216 kb on - strandat 4305.295 kb on + strandat 4305.295 kb on + strandat 4305.385 kb on + strand, within AMB_RS19710at 4305.385 kb on + strand, within AMB_RS19710at 4305.386 kb on - strand, within AMB_RS19710at 4305.386 kb on - strand, within AMB_RS19710at 4305.386 kb on - strand, within AMB_RS19710at 4305.386 kb on - strand, within AMB_RS19710at 4305.386 kb on - strand, within AMB_RS19710at 4305.386 kb on - strand, within AMB_RS19710at 4305.404 kb on - strand, within AMB_RS19710at 4305.404 kb on - strand, within AMB_RS19710at 4305.404 kb on - strand, within AMB_RS19710at 4305.406 kb on + strand, within AMB_RS19710at 4305.406 kb on + strand, within AMB_RS19710at 4305.406 kb on + strand, within AMB_RS19710at 4305.407 kb on - strand, within AMB_RS19710at 4305.689 kb on - strand, within AMB_RS19710at 4305.916 kb on + strandat 4305.916 kb on + strandat 4305.917 kb on - strandat 4305.921 kb on + strandat 4305.921 kb on + strandat 4305.921 kb on + strandat 4305.922 kb on - strandat 4305.922 kb on - strandat 4305.922 kb on - strandat 4305.944 kb on + strandat 4305.944 kb on + strandat 4305.944 kb on + strandat 4305.944 kb on + strandat 4305.944 kb on + strandat 4305.945 kb on - strandat 4305.945 kb on - strandat 4305.945 kb on - strandat 4305.945 kb on - strandat 4305.945 kb on - strandat 4305.945 kb on - strandat 4305.995 kb on + strandat 4306.046 kb on + strand, within AMB_RS19715at 4306.047 kb on - strand, within AMB_RS19715at 4306.086 kb on - strand, within AMB_RS19715at 4306.115 kb on + strand, within AMB_RS19715at 4306.116 kb on - strand, within AMB_RS19715at 4306.116 kb on - strand, within AMB_RS19715at 4306.116 kb on - strand, within AMB_RS19715at 4306.304 kb on + strand, within AMB_RS19715at 4306.305 kb on - strand, within AMB_RS19715at 4306.319 kb on + strand, within AMB_RS19715at 4306.415 kb on + strand, within AMB_RS19715at 4306.415 kb on + strand, within AMB_RS19715at 4306.415 kb on + strand, within AMB_RS19715at 4306.415 kb on + strand, within AMB_RS19715at 4306.416 kb on - strand, within AMB_RS19715at 4306.416 kb on - strand, within AMB_RS19715at 4306.416 kb on - strand, within AMB_RS19715at 4306.416 kb on - strand, within AMB_RS19715at 4306.416 kb on - strand, within AMB_RS19715at 4306.416 kb on - strand, within AMB_RS19715at 4306.416 kb on - strand, within AMB_RS19715at 4306.551 kb on - strand, within AMB_RS19715at 4306.551 kb on - strand, within AMB_RS19715at 4306.558 kb on - strand, within AMB_RS19715at 4306.665 kb on + strand, within AMB_RS19715at 4306.665 kb on + strand, within AMB_RS19715at 4306.665 kb on + strand, within AMB_RS19715at 4306.698 kb on + strand, within AMB_RS19715at 4306.699 kb on - strand, within AMB_RS19715at 4306.699 kb on - strand, within AMB_RS19715at 4306.718 kb on + strand, within AMB_RS19715at 4306.742 kb on + strand, within AMB_RS19715at 4306.742 kb on + strand, within AMB_RS19715at 4306.743 kb on - strand, within AMB_RS19715at 4306.779 kb on + strand, within AMB_RS19715at 4306.779 kb on + strand, within AMB_RS19715at 4306.779 kb on + strand, within AMB_RS19715at 4306.779 kb on + strand, within AMB_RS19715at 4306.779 kb on + strand, within AMB_RS19715at 4306.779 kb on + strand, within AMB_RS19715at 4306.779 kb on + strand, within AMB_RS19715at 4306.780 kb on - strand, within AMB_RS19715at 4306.780 kb on - strand, within AMB_RS19715at 4306.780 kb on - strand, within AMB_RS19715at 4306.892 kb on + strandat 4306.892 kb on + strandat 4306.892 kb on + strandat 4306.892 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_nonmag_1
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4,304,356 + AMB_RS19705 0.55 -0.6
4,304,356 + AMB_RS19705 0.55 +0.1
4,304,357 - AMB_RS19705 0.55 -0.1
4,304,357 - AMB_RS19705 0.55 -0.4
4,304,357 - AMB_RS19705 0.55 -0.3
4,304,529 + AMB_RS19705 0.65 +0.3
4,304,529 + AMB_RS19705 0.65 -0.3
4,304,529 + AMB_RS19705 0.65 +0.0
4,304,529 + AMB_RS19705 0.65 -0.1
4,304,529 + AMB_RS19705 0.65 +0.4
4,304,530 - AMB_RS19705 0.65 -0.4
4,304,530 - AMB_RS19705 0.65 -1.6
4,304,530 - AMB_RS19705 0.65 +0.3
4,304,530 - AMB_RS19705 0.65 +0.7
4,304,735 - AMB_RS19705 0.78 -0.4
4,304,735 - AMB_RS19705 0.78 +0.3
4,304,735 - AMB_RS19705 0.78 -1.0
4,305,142 + -0.7
4,305,142 + +0.3
4,305,142 + -0.0
4,305,142 + +1.8
4,305,143 - -0.6
4,305,149 + -1.2
4,305,149 + -0.4
4,305,154 + -0.4
4,305,154 + +0.2
4,305,154 + -0.7
4,305,155 - -1.1
4,305,155 - +0.2
4,305,155 - -0.2
4,305,155 - +0.2
4,305,160 + -0.1
4,305,161 - +0.4
4,305,161 - +1.2
4,305,161 - -0.2
4,305,215 + -0.8
4,305,216 - -0.2
4,305,216 - +0.0
4,305,295 + -0.2
4,305,295 + -0.8
4,305,385 + AMB_RS19710 0.23 +0.7
4,305,385 + AMB_RS19710 0.23 +0.3
4,305,386 - AMB_RS19710 0.23 +0.7
4,305,386 - AMB_RS19710 0.23 -0.4
4,305,386 - AMB_RS19710 0.23 -1.3
4,305,386 - AMB_RS19710 0.23 -0.3
4,305,386 - AMB_RS19710 0.23 -0.3
4,305,386 - AMB_RS19710 0.23 +0.6
4,305,404 - AMB_RS19710 0.25 -0.3
4,305,404 - AMB_RS19710 0.25 +0.5
4,305,404 - AMB_RS19710 0.25 +0.5
4,305,406 + AMB_RS19710 0.26 -0.3
4,305,406 + AMB_RS19710 0.26 +0.3
4,305,406 + AMB_RS19710 0.26 -1.0
4,305,407 - AMB_RS19710 0.26 -0.3
4,305,689 - AMB_RS19710 0.67 -0.5
4,305,916 + -3.0
4,305,916 + +1.2
4,305,917 - +1.1
4,305,921 + +0.1
4,305,921 + -0.4
4,305,921 + -0.3
4,305,922 - -2.9
4,305,922 - +0.1
4,305,922 - -0.6
4,305,944 + -0.1
4,305,944 + -0.7
4,305,944 + -1.1
4,305,944 + +0.1
4,305,944 + +0.0
4,305,945 - -1.3
4,305,945 - -0.0
4,305,945 - -0.3
4,305,945 - -1.7
4,305,945 - +0.3
4,305,945 - +0.8
4,305,995 + -0.8
4,306,046 + AMB_RS19715 0.12 -0.5
4,306,047 - AMB_RS19715 0.12 +0.6
4,306,086 - AMB_RS19715 0.16 +0.0
4,306,115 + AMB_RS19715 0.19 -1.0
4,306,116 - AMB_RS19715 0.19 -0.4
4,306,116 - AMB_RS19715 0.19 -0.2
4,306,116 - AMB_RS19715 0.19 +0.5
4,306,304 + AMB_RS19715 0.37 -1.3
4,306,305 - AMB_RS19715 0.38 +0.1
4,306,319 + AMB_RS19715 0.39 +0.2
4,306,415 + AMB_RS19715 0.48 -0.2
4,306,415 + AMB_RS19715 0.48 -0.0
4,306,415 + AMB_RS19715 0.48 -0.4
4,306,415 + AMB_RS19715 0.48 -1.2
4,306,416 - AMB_RS19715 0.49 -0.7
4,306,416 - AMB_RS19715 0.49 -0.3
4,306,416 - AMB_RS19715 0.49 +0.3
4,306,416 - AMB_RS19715 0.49 +0.3
4,306,416 - AMB_RS19715 0.49 -0.2
4,306,416 - AMB_RS19715 0.49 -0.4
4,306,416 - AMB_RS19715 0.49 -0.8
4,306,551 - AMB_RS19715 0.62 -0.5
4,306,551 - AMB_RS19715 0.62 +1.2
4,306,558 - AMB_RS19715 0.63 -0.9
4,306,665 + AMB_RS19715 0.73 -0.4
4,306,665 + AMB_RS19715 0.73 -0.9
4,306,665 + AMB_RS19715 0.73 -1.4
4,306,698 + AMB_RS19715 0.76 -0.1
4,306,699 - AMB_RS19715 0.77 -0.4
4,306,699 - AMB_RS19715 0.77 +0.9
4,306,718 + AMB_RS19715 0.78 -1.1
4,306,742 + AMB_RS19715 0.81 +1.9
4,306,742 + AMB_RS19715 0.81 -0.2
4,306,743 - AMB_RS19715 0.81 +0.1
4,306,779 + AMB_RS19715 0.84 -1.0
4,306,779 + AMB_RS19715 0.84 +0.1
4,306,779 + AMB_RS19715 0.84 -0.1
4,306,779 + AMB_RS19715 0.84 -0.1
4,306,779 + AMB_RS19715 0.84 -0.1
4,306,779 + AMB_RS19715 0.84 -0.2
4,306,779 + AMB_RS19715 0.84 -0.9
4,306,780 - AMB_RS19715 0.85 -0.0
4,306,780 - AMB_RS19715 0.85 -0.1
4,306,780 - AMB_RS19715 0.85 +0.2
4,306,892 + -0.4
4,306,892 + -1.3
4,306,892 + -0.4
4,306,892 + -0.7

Or see this region's nucleotide sequence