Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS16265

Experiment: 150_nonmag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS16255 and AMB_RS16260 overlap by 4 nucleotidesAMB_RS16260 and AMB_RS16265 overlap by 1 nucleotidesAMB_RS16265 and AMB_RS16270 are separated by 127 nucleotidesAMB_RS16270 and AMB_RS16275 are separated by 64 nucleotides AMB_RS16255: AMB_RS16255 - Holliday junction branch migration protein RuvA, at 3,483,969 to 3,484,607 _RS16255 AMB_RS16260: AMB_RS16260 - crossover junction endodeoxyribonuclease RuvC, at 3,484,604 to 3,485,104 _RS16260 AMB_RS16265: AMB_RS16265 - YebC/PmpR family DNA-binding transcriptional regulator, at 3,485,104 to 3,485,853 _RS16265 AMB_RS16270: AMB_RS16270 - organic solvent ABC transporter, at 3,485,981 to 3,486,601 _RS16270 AMB_RS16275: AMB_RS16275 - metallophosphoesterase, at 3,486,666 to 3,487,484 _RS16275 Position (kb) 3485 3486Strain fitness (log2 ratio) -3 -2 -1 0 1at 3485.268 kb on - strand, within AMB_RS16265at 3485.900 kb on - strandat 3486.294 kb on + strand, within AMB_RS16270at 3486.294 kb on + strand, within AMB_RS16270at 3486.294 kb on + strand, within AMB_RS16270at 3486.295 kb on - strand, within AMB_RS16270at 3486.295 kb on - strand, within AMB_RS16270at 3486.334 kb on + strand, within AMB_RS16270at 3486.334 kb on + strand, within AMB_RS16270at 3486.335 kb on - strand, within AMB_RS16270at 3486.335 kb on - strand, within AMB_RS16270at 3486.408 kb on + strand, within AMB_RS16270at 3486.640 kb on - strandat 3486.640 kb on - strandat 3486.641 kb on + strandat 3486.641 kb on + strandat 3486.641 kb on + strandat 3486.641 kb on + strandat 3486.641 kb on + strandat 3486.641 kb on + strandat 3486.641 kb on + strandat 3486.641 kb on + strandat 3486.641 kb on + strandat 3486.642 kb on - strandat 3486.642 kb on - strandat 3486.642 kb on - strandat 3486.642 kb on - strandat 3486.642 kb on - strandat 3486.642 kb on - strandat 3486.642 kb on - strandat 3486.642 kb on - strandat 3486.642 kb on - strandat 3486.642 kb on - strandat 3486.642 kb on - strandat 3486.642 kb on - strandat 3486.642 kb on - strandat 3486.642 kb on - strandat 3486.642 kb on - strandat 3486.642 kb on - strandat 3486.642 kb on - strandat 3486.642 kb on - strandat 3486.642 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_nonmag_1
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3,485,268 - AMB_RS16265 0.22 +1.2
3,485,900 - -0.7
3,486,294 + AMB_RS16270 0.50 -0.1
3,486,294 + AMB_RS16270 0.50 -0.4
3,486,294 + AMB_RS16270 0.50 +0.9
3,486,295 - AMB_RS16270 0.51 +0.0
3,486,295 - AMB_RS16270 0.51 -1.1
3,486,334 + AMB_RS16270 0.57 -1.7
3,486,334 + AMB_RS16270 0.57 +0.1
3,486,335 - AMB_RS16270 0.57 -0.3
3,486,335 - AMB_RS16270 0.57 -0.1
3,486,408 + AMB_RS16270 0.69 -0.1
3,486,640 - -0.6
3,486,640 - +0.2
3,486,641 + -0.8
3,486,641 + -0.6
3,486,641 + +0.6
3,486,641 + +0.2
3,486,641 + -2.9
3,486,641 + -2.0
3,486,641 + +0.1
3,486,641 + -0.1
3,486,641 + -1.1
3,486,642 - +0.0
3,486,642 - -0.3
3,486,642 - +0.1
3,486,642 - -0.2
3,486,642 - +0.4
3,486,642 - -0.4
3,486,642 - +0.8
3,486,642 - -1.0
3,486,642 - +0.0
3,486,642 - -0.3
3,486,642 - +0.3
3,486,642 - -1.1
3,486,642 - -0.3
3,486,642 - +0.2
3,486,642 - +0.1
3,486,642 - -0.6
3,486,642 - -0.2
3,486,642 - -0.8
3,486,642 - -0.7

Or see this region's nucleotide sequence