Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS14380

Experiment: 150_nonmag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS14375 and AMB_RS14380 are separated by 63 nucleotidesAMB_RS14380 and AMB_RS14385 are separated by 186 nucleotidesAMB_RS14385 and AMB_RS14390 are separated by 1 nucleotides AMB_RS14375: AMB_RS14375 - flagellar capping protein, at 3,058,340 to 3,059,620 _RS14375 AMB_RS14380: AMB_RS14380 - hypothetical protein, at 3,059,684 to 3,060,004 _RS14380 AMB_RS14385: AMB_RS14385 - thiamine phosphate synthase, at 3,060,191 to 3,060,829 _RS14385 AMB_RS14390: AMB_RS14390 - TIGR00730 family Rossman fold protein, at 3,060,831 to 3,061,412 _RS14390 Position (kb) 3059 3060 3061Strain fitness (log2 ratio) -2 -1 0 1at 3059.027 kb on + strand, within AMB_RS14375at 3059.028 kb on - strand, within AMB_RS14375at 3059.028 kb on - strand, within AMB_RS14375at 3059.028 kb on - strand, within AMB_RS14375at 3059.098 kb on + strand, within AMB_RS14375at 3059.099 kb on - strand, within AMB_RS14375at 3059.099 kb on - strand, within AMB_RS14375at 3059.099 kb on - strand, within AMB_RS14375at 3059.099 kb on - strand, within AMB_RS14375at 3059.291 kb on + strand, within AMB_RS14375at 3059.291 kb on + strand, within AMB_RS14375at 3059.292 kb on - strand, within AMB_RS14375at 3059.546 kb on + strandat 3059.546 kb on + strandat 3059.685 kb on + strandat 3059.686 kb on - strandat 3059.686 kb on - strandat 3060.063 kb on + strandat 3060.063 kb on + strandat 3060.063 kb on + strandat 3060.064 kb on - strandat 3060.064 kb on - strandat 3060.064 kb on - strandat 3060.064 kb on - strandat 3060.064 kb on - strandat 3060.089 kb on + strandat 3060.089 kb on + strandat 3060.090 kb on - strandat 3060.883 kb on - strandat 3060.883 kb on - strandat 3060.942 kb on + strand, within AMB_RS14390

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_nonmag_1
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3,059,027 + AMB_RS14375 0.54 +0.0
3,059,028 - AMB_RS14375 0.54 -0.1
3,059,028 - AMB_RS14375 0.54 +0.1
3,059,028 - AMB_RS14375 0.54 -0.8
3,059,098 + AMB_RS14375 0.59 +0.1
3,059,099 - AMB_RS14375 0.59 +0.3
3,059,099 - AMB_RS14375 0.59 -0.2
3,059,099 - AMB_RS14375 0.59 -0.6
3,059,099 - AMB_RS14375 0.59 -0.9
3,059,291 + AMB_RS14375 0.74 -0.5
3,059,291 + AMB_RS14375 0.74 +1.4
3,059,292 - AMB_RS14375 0.74 +1.4
3,059,546 + +0.1
3,059,546 + +0.2
3,059,685 + -2.0
3,059,686 - +0.4
3,059,686 - -0.7
3,060,063 + +0.7
3,060,063 + -0.0
3,060,063 + -0.6
3,060,064 - -2.4
3,060,064 - -1.2
3,060,064 - +0.6
3,060,064 - -0.1
3,060,064 - -1.5
3,060,089 + +0.1
3,060,089 + -0.3
3,060,090 - -0.3
3,060,883 - -1.6
3,060,883 - -0.0
3,060,942 + AMB_RS14390 0.19 -1.4

Or see this region's nucleotide sequence