Experiment: 150_nonmag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS14370 and AMB_RS14375 are separated by 144 nucleotides AMB_RS14375 and AMB_RS14380 are separated by 63 nucleotides AMB_RS14380 and AMB_RS14385 are separated by 186 nucleotides
AMB_RS14370: AMB_RS14370 - hypothetical protein, at 3,056,630 to 3,058,195
_RS14370
AMB_RS14375: AMB_RS14375 - flagellar capping protein, at 3,058,340 to 3,059,620
_RS14375
AMB_RS14380: AMB_RS14380 - hypothetical protein, at 3,059,684 to 3,060,004
_RS14380
AMB_RS14385: AMB_RS14385 - thiamine phosphate synthase, at 3,060,191 to 3,060,829
_RS14385
Position (kb)
3058
3059
3060 Strain fitness (log2 ratio)
-2
-1
0
1 at 3057.420 kb on - strand, within AMB_RS14370 at 3057.554 kb on + strand, within AMB_RS14370 at 3057.555 kb on - strand, within AMB_RS14370 at 3057.563 kb on + strand, within AMB_RS14370 at 3057.563 kb on + strand, within AMB_RS14370 at 3057.564 kb on - strand, within AMB_RS14370 at 3057.631 kb on + strand, within AMB_RS14370 at 3058.119 kb on + strand at 3058.119 kb on + strand at 3058.247 kb on + strand at 3058.397 kb on + strand at 3058.397 kb on + strand at 3058.397 kb on + strand at 3058.398 kb on - strand at 3058.541 kb on + strand, within AMB_RS14375 at 3058.541 kb on + strand, within AMB_RS14375 at 3058.541 kb on + strand, within AMB_RS14375 at 3058.542 kb on - strand, within AMB_RS14375 at 3058.542 kb on - strand, within AMB_RS14375 at 3058.543 kb on + strand, within AMB_RS14375 at 3059.027 kb on + strand, within AMB_RS14375 at 3059.028 kb on - strand, within AMB_RS14375 at 3059.028 kb on - strand, within AMB_RS14375 at 3059.028 kb on - strand, within AMB_RS14375 at 3059.098 kb on + strand, within AMB_RS14375 at 3059.099 kb on - strand, within AMB_RS14375 at 3059.099 kb on - strand, within AMB_RS14375 at 3059.099 kb on - strand, within AMB_RS14375 at 3059.099 kb on - strand, within AMB_RS14375 at 3059.291 kb on + strand, within AMB_RS14375 at 3059.291 kb on + strand, within AMB_RS14375 at 3059.292 kb on - strand, within AMB_RS14375 at 3059.546 kb on + strand at 3059.546 kb on + strand at 3059.685 kb on + strand at 3059.686 kb on - strand at 3059.686 kb on - strand at 3060.063 kb on + strand at 3060.063 kb on + strand at 3060.063 kb on + strand at 3060.064 kb on - strand at 3060.064 kb on - strand at 3060.064 kb on - strand at 3060.064 kb on - strand at 3060.064 kb on - strand at 3060.089 kb on + strand at 3060.089 kb on + strand at 3060.090 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 150_nonmag_1 remove 3,057,420 - AMB_RS14370 0.50 +1.5 3,057,554 + AMB_RS14370 0.59 -0.5 3,057,555 - AMB_RS14370 0.59 -0.3 3,057,563 + AMB_RS14370 0.60 +0.1 3,057,563 + AMB_RS14370 0.60 -0.5 3,057,564 - AMB_RS14370 0.60 +0.1 3,057,631 + AMB_RS14370 0.64 +1.2 3,058,119 + -0.2 3,058,119 + -1.4 3,058,247 + +1.4 3,058,397 + +0.4 3,058,397 + -0.1 3,058,397 + -0.4 3,058,398 - -0.1 3,058,541 + AMB_RS14375 0.16 +0.6 3,058,541 + AMB_RS14375 0.16 +0.0 3,058,541 + AMB_RS14375 0.16 -0.5 3,058,542 - AMB_RS14375 0.16 -0.4 3,058,542 - AMB_RS14375 0.16 -0.3 3,058,543 + AMB_RS14375 0.16 -0.7 3,059,027 + AMB_RS14375 0.54 +0.0 3,059,028 - AMB_RS14375 0.54 -0.1 3,059,028 - AMB_RS14375 0.54 +0.1 3,059,028 - AMB_RS14375 0.54 -0.8 3,059,098 + AMB_RS14375 0.59 +0.1 3,059,099 - AMB_RS14375 0.59 +0.3 3,059,099 - AMB_RS14375 0.59 -0.2 3,059,099 - AMB_RS14375 0.59 -0.6 3,059,099 - AMB_RS14375 0.59 -0.9 3,059,291 + AMB_RS14375 0.74 -0.5 3,059,291 + AMB_RS14375 0.74 +1.4 3,059,292 - AMB_RS14375 0.74 +1.4 3,059,546 + +0.1 3,059,546 + +0.2 3,059,685 + -2.0 3,059,686 - +0.4 3,059,686 - -0.7 3,060,063 + +0.7 3,060,063 + -0.0 3,060,063 + -0.6 3,060,064 - -2.4 3,060,064 - -1.2 3,060,064 - +0.6 3,060,064 - -0.1 3,060,064 - -1.5 3,060,089 + +0.1 3,060,089 + -0.3 3,060,090 - -0.3
Or see this region's nucleotide sequence