Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS13885

Experiment: 150_nonmag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS13875 and AMB_RS13880 overlap by 4 nucleotidesAMB_RS13880 and AMB_RS13885 overlap by 4 nucleotidesAMB_RS13885 and AMB_RS13890 overlap by 4 nucleotidesAMB_RS13890 and AMB_RS13895 overlap by 4 nucleotides AMB_RS13875: AMB_RS13875 - 8-amino-7-oxononanoate synthase, at 2,945,082 to 2,946,260 _RS13875 AMB_RS13880: AMB_RS13880 - alpha/beta hydrolase, at 2,946,257 to 2,946,895 _RS13880 AMB_RS13885: AMB_RS13885 - methyltransferase domain-containing protein, at 2,946,892 to 2,947,626 _RS13885 AMB_RS13890: AMB_RS13890 - ATP-dependent dethiobiotin synthetase BioD, at 2,947,623 to 2,948,240 _RS13890 AMB_RS13895: AMB_RS13895 - adenosylmethionine--8-amino-7-oxononanoate transaminase, at 2,948,237 to 2,949,556 _RS13895 Position (kb) 2946 2947 2948Strain fitness (log2 ratio) -1 0 1at 2947.559 kb on + strandat 2948.219 kb on + strandat 2948.219 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_nonmag_1
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2,947,559 + +0.5
2,948,219 + -0.6
2,948,219 + +1.2

Or see this region's nucleotide sequence