Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS12735

Experiment: 150_nonmag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS12730 and AMB_RS12735 are separated by 5 nucleotidesAMB_RS12735 and AMB_RS23435 are separated by 36 nucleotides AMB_RS12730: AMB_RS12730 - arginine--tRNA ligase, at 2,710,282 to 2,712,012 _RS12730 AMB_RS12735: AMB_RS12735 - deoxyguanosinetriphosphate triphosphohydrolase, at 2,712,018 to 2,713,211 _RS12735 AMB_RS23435: AMB_RS23435 - GGDEF domain-containing protein, at 2,713,248 to 2,714,408 _RS23435 Position (kb) 2712 2713 2714Strain fitness (log2 ratio) -1 0 1at 2713.469 kb on + strand, within AMB_RS23435at 2713.470 kb on - strand, within AMB_RS23435at 2713.544 kb on + strand, within AMB_RS23435at 2713.544 kb on + strand, within AMB_RS23435at 2713.545 kb on - strand, within AMB_RS23435at 2713.545 kb on - strand, within AMB_RS23435at 2713.858 kb on + strand, within AMB_RS23435at 2714.120 kb on - strand, within AMB_RS23435at 2714.120 kb on - strand, within AMB_RS23435at 2714.120 kb on - strand, within AMB_RS23435

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_nonmag_1
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2,713,469 + AMB_RS23435 0.19 -0.5
2,713,470 - AMB_RS23435 0.19 -1.0
2,713,544 + AMB_RS23435 0.25 -0.8
2,713,544 + AMB_RS23435 0.25 -0.3
2,713,545 - AMB_RS23435 0.26 -0.3
2,713,545 - AMB_RS23435 0.26 +0.5
2,713,858 + AMB_RS23435 0.53 +0.7
2,714,120 - AMB_RS23435 0.75 -1.2
2,714,120 - AMB_RS23435 0.75 -0.6
2,714,120 - AMB_RS23435 0.75 +0.1

Or see this region's nucleotide sequence