Experiment: 150_nonmag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS12665 and AMB_RS12670 overlap by 4 nucleotides AMB_RS12670 and AMB_RS12675 overlap by 1 nucleotides AMB_RS12675 and AMB_RS12680 are separated by 1 nucleotides
AMB_RS12665: AMB_RS12665 - M23 family peptidase, at 2,700,365 to 2,701,456
_RS12665
AMB_RS12670: AMB_RS12670 - protein-L-isoaspartate O-methyltransferase, at 2,701,453 to 2,702,097
_RS12670
AMB_RS12675: AMB_RS12675 - 5'-nucleotidase SurE, at 2,702,097 to 2,702,879
_RS12675
AMB_RS12680: AMB_RS12680 - serine--tRNA ligase, at 2,702,881 to 2,704,149
_RS12680
Position (kb)
2701
2702
2703 Strain fitness (log2 ratio)
-1
0
1
2 at 2700.649 kb on - strand, within AMB_RS12665 at 2700.649 kb on - strand, within AMB_RS12665 at 2700.703 kb on + strand, within AMB_RS12665 at 2700.704 kb on - strand, within AMB_RS12665 at 2701.025 kb on + strand, within AMB_RS12665 at 2701.039 kb on - strand, within AMB_RS12665 at 2701.039 kb on - strand, within AMB_RS12665 at 2701.039 kb on - strand, within AMB_RS12665 at 2701.134 kb on + strand, within AMB_RS12665 at 2701.254 kb on + strand, within AMB_RS12665 at 2701.344 kb on + strand, within AMB_RS12665 at 2701.426 kb on + strand at 2701.959 kb on - strand, within AMB_RS12670 at 2701.959 kb on - strand, within AMB_RS12670 at 2702.246 kb on - strand, within AMB_RS12675 at 2702.536 kb on + strand, within AMB_RS12675 at 2702.537 kb on - strand, within AMB_RS12675
Per-strain Table
Position Strand Gene LocusTag Fraction 150_nonmag_1 remove 2,700,649 - AMB_RS12665 0.26 -0.6 2,700,649 - AMB_RS12665 0.26 -0.7 2,700,703 + AMB_RS12665 0.31 -1.5 2,700,704 - AMB_RS12665 0.31 +0.9 2,701,025 + AMB_RS12665 0.60 -1.2 2,701,039 - AMB_RS12665 0.62 -0.5 2,701,039 - AMB_RS12665 0.62 -0.3 2,701,039 - AMB_RS12665 0.62 -0.4 2,701,134 + AMB_RS12665 0.70 -1.2 2,701,254 + AMB_RS12665 0.81 -0.6 2,701,344 + AMB_RS12665 0.90 +0.1 2,701,426 + -0.7 2,701,959 - AMB_RS12670 0.78 -0.5 2,701,959 - AMB_RS12670 0.78 -0.2 2,702,246 - AMB_RS12675 0.19 -1.3 2,702,536 + AMB_RS12675 0.56 +2.1 2,702,537 - AMB_RS12675 0.56 +0.0
Or see this region's nucleotide sequence