Experiment: 150_nonmag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS06665 and AMB_RS06670 overlap by 1 nucleotides AMB_RS06670 and AMB_RS06675 are separated by 27 nucleotides AMB_RS06675 and AMB_RS06680 are separated by 139 nucleotides AMB_RS06680 and AMB_RS06685 are separated by 84 nucleotides
AMB_RS06665: AMB_RS06665 - LrgB family protein, at 1,429,362 to 1,430,081
_RS06665
AMB_RS06670: AMB_RS06670 - CidA/LrgA family protein, at 1,430,081 to 1,430,434
_RS06670
AMB_RS06675: AMB_RS06675 - membrane protein, at 1,430,462 to 1,430,746
_RS06675
AMB_RS06680: AMB_RS06680 - orotate phosphoribosyltransferase, at 1,430,886 to 1,431,578
_RS06680
AMB_RS06685: AMB_RS06685 - enoyl-CoA hydratase, at 1,431,663 to 1,432,442
_RS06685
Position (kb) 1430
1431 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1429.813 kb on + strand, within AMB_RS06665 at 1430.002 kb on + strand, within AMB_RS06665 at 1430.003 kb on - strand, within AMB_RS06665 at 1430.050 kb on + strand at 1430.050 kb on + strand at 1430.050 kb on + strand at 1430.050 kb on + strand at 1430.050 kb on + strand at 1430.050 kb on + strand at 1430.051 kb on - strand at 1430.099 kb on - strand at 1430.246 kb on + strand, within AMB_RS06670 at 1430.246 kb on + strand, within AMB_RS06670 at 1430.247 kb on - strand, within AMB_RS06670 at 1430.422 kb on + strand at 1430.422 kb on + strand at 1430.423 kb on - strand at 1430.423 kb on - strand at 1430.423 kb on - strand at 1430.423 kb on - strand at 1430.423 kb on - strand at 1430.423 kb on - strand at 1430.424 kb on + strand at 1430.424 kb on + strand at 1430.424 kb on + strand at 1430.425 kb on - strand at 1430.425 kb on - strand at 1430.491 kb on - strand, within AMB_RS06675 at 1430.513 kb on - strand, within AMB_RS06675 at 1430.550 kb on + strand, within AMB_RS06675 at 1430.550 kb on + strand, within AMB_RS06675 at 1430.574 kb on + strand, within AMB_RS06675 at 1430.574 kb on + strand, within AMB_RS06675 at 1430.574 kb on + strand, within AMB_RS06675 at 1430.575 kb on - strand, within AMB_RS06675 at 1430.575 kb on - strand, within AMB_RS06675 at 1430.575 kb on - strand, within AMB_RS06675 at 1430.575 kb on - strand, within AMB_RS06675 at 1430.575 kb on - strand, within AMB_RS06675 at 1430.575 kb on - strand, within AMB_RS06675 at 1430.575 kb on - strand, within AMB_RS06675 at 1430.575 kb on - strand, within AMB_RS06675 at 1430.575 kb on - strand, within AMB_RS06675 at 1430.575 kb on - strand, within AMB_RS06675 at 1430.627 kb on + strand, within AMB_RS06675 at 1430.628 kb on - strand, within AMB_RS06675 at 1430.800 kb on - strand at 1430.819 kb on + strand at 1430.819 kb on + strand at 1430.819 kb on + strand at 1430.819 kb on + strand at 1430.820 kb on - strand at 1430.820 kb on - strand at 1430.820 kb on - strand at 1430.821 kb on + strand at 1430.822 kb on - strand at 1430.822 kb on - strand at 1431.615 kb on - strand at 1431.617 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 150_nonmag_1 remove 1,429,813 + AMB_RS06665 0.63 -1.2 1,430,002 + AMB_RS06665 0.89 -1.2 1,430,003 - AMB_RS06665 0.89 -1.0 1,430,050 + -0.9 1,430,050 + -0.1 1,430,050 + -0.5 1,430,050 + -0.3 1,430,050 + -1.8 1,430,050 + -1.1 1,430,051 - +0.7 1,430,099 - -0.2 1,430,246 + AMB_RS06670 0.47 +0.1 1,430,246 + AMB_RS06670 0.47 -0.6 1,430,247 - AMB_RS06670 0.47 +0.1 1,430,422 + -0.3 1,430,422 + -0.2 1,430,423 - +1.1 1,430,423 - -0.8 1,430,423 - -0.7 1,430,423 - -1.5 1,430,423 - -0.3 1,430,423 - +0.3 1,430,424 + +0.1 1,430,424 + -0.3 1,430,424 + -0.3 1,430,425 - -0.2 1,430,425 - -0.1 1,430,491 - AMB_RS06675 0.10 +0.3 1,430,513 - AMB_RS06675 0.18 -0.0 1,430,550 + AMB_RS06675 0.31 -0.5 1,430,550 + AMB_RS06675 0.31 -1.3 1,430,574 + AMB_RS06675 0.39 -0.2 1,430,574 + AMB_RS06675 0.39 -0.1 1,430,574 + AMB_RS06675 0.39 -1.2 1,430,575 - AMB_RS06675 0.40 -0.9 1,430,575 - AMB_RS06675 0.40 -0.2 1,430,575 - AMB_RS06675 0.40 -0.6 1,430,575 - AMB_RS06675 0.40 +1.4 1,430,575 - AMB_RS06675 0.40 -0.6 1,430,575 - AMB_RS06675 0.40 +0.2 1,430,575 - AMB_RS06675 0.40 -0.5 1,430,575 - AMB_RS06675 0.40 +0.3 1,430,575 - AMB_RS06675 0.40 -0.7 1,430,575 - AMB_RS06675 0.40 +0.4 1,430,627 + AMB_RS06675 0.58 +0.3 1,430,628 - AMB_RS06675 0.58 +0.5 1,430,800 - +0.8 1,430,819 + -0.4 1,430,819 + -1.9 1,430,819 + -0.3 1,430,819 + -1.3 1,430,820 - -0.0 1,430,820 - -1.1 1,430,820 - +1.4 1,430,821 + -1.0 1,430,822 - -0.4 1,430,822 - +1.6 1,431,615 - +2.4 1,431,617 - +0.4
Or see this region's nucleotide sequence