Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS04145

Experiment: 150_nonmag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS04140 and AMB_RS04145 are separated by 109 nucleotidesAMB_RS04145 and AMB_RS04150 are separated by 7 nucleotides AMB_RS04140: AMB_RS04140 - TRAP-type C4-dicarboxylate transport system, at 867,413 to 868,528 _RS04140 AMB_RS04145: AMB_RS04145 - homoprotocatechuate degradation operon regulator HpaR, at 868,638 to 869,129 _RS04145 AMB_RS04150: AMB_RS04150 - acetylornithine transaminase, at 869,137 to 870,303 _RS04150 Position (kb) 868 869 870Strain fitness (log2 ratio) -2 -1 0 1 2at 867.711 kb on + strand, within AMB_RS04140at 867.712 kb on - strand, within AMB_RS04140at 867.786 kb on + strand, within AMB_RS04140at 867.786 kb on + strand, within AMB_RS04140at 867.787 kb on - strand, within AMB_RS04140at 867.787 kb on - strand, within AMB_RS04140at 867.994 kb on + strand, within AMB_RS04140at 867.995 kb on - strand, within AMB_RS04140at 868.047 kb on + strand, within AMB_RS04140at 868.048 kb on - strand, within AMB_RS04140at 868.080 kb on + strand, within AMB_RS04140at 868.080 kb on + strand, within AMB_RS04140at 868.080 kb on + strand, within AMB_RS04140at 868.080 kb on + strand, within AMB_RS04140at 868.080 kb on + strand, within AMB_RS04140at 868.080 kb on + strand, within AMB_RS04140at 868.080 kb on + strand, within AMB_RS04140at 868.081 kb on - strand, within AMB_RS04140at 868.084 kb on - strand, within AMB_RS04140at 868.173 kb on + strand, within AMB_RS04140at 868.459 kb on + strandat 868.459 kb on + strandat 868.460 kb on - strandat 868.460 kb on - strandat 868.531 kb on + strandat 868.531 kb on + strandat 868.532 kb on - strandat 868.532 kb on - strandat 869.010 kb on + strand, within AMB_RS04145at 869.056 kb on + strand, within AMB_RS04145at 869.057 kb on - strand, within AMB_RS04145at 869.057 kb on - strand, within AMB_RS04145at 869.057 kb on - strand, within AMB_RS04145at 869.058 kb on + strand, within AMB_RS04145at 869.058 kb on + strand, within AMB_RS04145at 869.058 kb on + strand, within AMB_RS04145at 869.059 kb on - strand, within AMB_RS04145at 869.059 kb on - strand, within AMB_RS04145at 869.418 kb on + strand, within AMB_RS04150at 869.418 kb on + strand, within AMB_RS04150at 869.418 kb on + strand, within AMB_RS04150at 869.418 kb on + strand, within AMB_RS04150at 869.419 kb on - strand, within AMB_RS04150at 869.419 kb on - strand, within AMB_RS04150at 869.419 kb on - strand, within AMB_RS04150at 869.421 kb on + strand, within AMB_RS04150at 869.568 kb on + strand, within AMB_RS04150at 869.568 kb on + strand, within AMB_RS04150at 869.568 kb on + strand, within AMB_RS04150at 869.569 kb on - strand, within AMB_RS04150at 869.569 kb on - strand, within AMB_RS04150at 869.569 kb on - strand, within AMB_RS04150at 869.572 kb on + strand, within AMB_RS04150at 869.573 kb on - strand, within AMB_RS04150at 869.573 kb on - strand, within AMB_RS04150at 869.573 kb on - strand, within AMB_RS04150at 869.573 kb on - strand, within AMB_RS04150at 869.573 kb on - strand, within AMB_RS04150at 869.621 kb on - strand, within AMB_RS04150at 869.661 kb on + strand, within AMB_RS04150at 869.661 kb on + strand, within AMB_RS04150at 869.661 kb on + strand, within AMB_RS04150at 869.661 kb on + strand, within AMB_RS04150at 869.726 kb on - strand, within AMB_RS04150

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_nonmag_1
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867,711 + AMB_RS04140 0.27 -0.1
867,712 - AMB_RS04140 0.27 +0.5
867,786 + AMB_RS04140 0.33 -2.4
867,786 + AMB_RS04140 0.33 -0.5
867,787 - AMB_RS04140 0.34 -0.3
867,787 - AMB_RS04140 0.34 -0.3
867,994 + AMB_RS04140 0.52 +0.3
867,995 - AMB_RS04140 0.52 -0.8
868,047 + AMB_RS04140 0.57 -0.3
868,048 - AMB_RS04140 0.57 -0.7
868,080 + AMB_RS04140 0.60 -0.2
868,080 + AMB_RS04140 0.60 +0.1
868,080 + AMB_RS04140 0.60 -0.2
868,080 + AMB_RS04140 0.60 -0.1
868,080 + AMB_RS04140 0.60 -0.5
868,080 + AMB_RS04140 0.60 +0.1
868,080 + AMB_RS04140 0.60 -0.6
868,081 - AMB_RS04140 0.60 +0.2
868,084 - AMB_RS04140 0.60 -1.3
868,173 + AMB_RS04140 0.68 +0.6
868,459 + -0.1
868,459 + -0.1
868,460 - -0.1
868,460 - -0.4
868,531 + -0.2
868,531 + -0.0
868,532 - -0.8
868,532 - -1.5
869,010 + AMB_RS04145 0.76 -1.0
869,056 + AMB_RS04145 0.85 -0.1
869,057 - AMB_RS04145 0.85 +0.5
869,057 - AMB_RS04145 0.85 +0.5
869,057 - AMB_RS04145 0.85 +0.1
869,058 + AMB_RS04145 0.85 -0.0
869,058 + AMB_RS04145 0.85 +0.9
869,058 + AMB_RS04145 0.85 -0.5
869,059 - AMB_RS04145 0.86 -0.9
869,059 - AMB_RS04145 0.86 -0.3
869,418 + AMB_RS04150 0.24 +2.0
869,418 + AMB_RS04150 0.24 -0.4
869,418 + AMB_RS04150 0.24 -2.1
869,418 + AMB_RS04150 0.24 +0.1
869,419 - AMB_RS04150 0.24 -0.0
869,419 - AMB_RS04150 0.24 +0.5
869,419 - AMB_RS04150 0.24 -0.0
869,421 + AMB_RS04150 0.24 -0.4
869,568 + AMB_RS04150 0.37 -0.9
869,568 + AMB_RS04150 0.37 -2.1
869,568 + AMB_RS04150 0.37 +0.5
869,569 - AMB_RS04150 0.37 -0.2
869,569 - AMB_RS04150 0.37 -0.7
869,569 - AMB_RS04150 0.37 +1.2
869,572 + AMB_RS04150 0.37 +0.5
869,573 - AMB_RS04150 0.37 +0.1
869,573 - AMB_RS04150 0.37 -1.1
869,573 - AMB_RS04150 0.37 +0.1
869,573 - AMB_RS04150 0.37 +0.5
869,573 - AMB_RS04150 0.37 -2.4
869,621 - AMB_RS04150 0.41 -1.2
869,661 + AMB_RS04150 0.45 +0.9
869,661 + AMB_RS04150 0.45 +1.0
869,661 + AMB_RS04150 0.45 -1.1
869,661 + AMB_RS04150 0.45 -0.5
869,726 - AMB_RS04150 0.50 -0.1

Or see this region's nucleotide sequence