Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS03640

Experiment: 150_nonmag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS03635 and AMB_RS03640 overlap by 20 nucleotidesAMB_RS03640 and AMB_RS03645 are separated by 134 nucleotides AMB_RS03635: AMB_RS03635 - tetratricopeptide repeat protein, at 765,863 to 768,139 _RS03635 AMB_RS03640: AMB_RS03640 - CoA transferase, at 768,120 to 769,226 _RS03640 AMB_RS03645: AMB_RS03645 - enoyl-CoA hydratase, at 769,361 to 770,143 _RS03645 Position (kb) 768 769 770Strain fitness (log2 ratio) -1 0 1at 767.243 kb on + strand, within AMB_RS03635at 767.575 kb on + strand, within AMB_RS03635at 767.575 kb on + strand, within AMB_RS03635at 767.575 kb on + strand, within AMB_RS03635at 767.576 kb on - strand, within AMB_RS03635at 767.576 kb on - strand, within AMB_RS03635at 767.576 kb on - strand, within AMB_RS03635at 767.594 kb on + strand, within AMB_RS03635at 767.595 kb on - strand, within AMB_RS03635at 768.032 kb on + strandat 768.517 kb on + strand, within AMB_RS03640at 768.517 kb on + strand, within AMB_RS03640at 768.517 kb on + strand, within AMB_RS03640at 768.518 kb on - strand, within AMB_RS03640at 768.518 kb on - strand, within AMB_RS03640at 768.518 kb on - strand, within AMB_RS03640at 768.526 kb on + strand, within AMB_RS03640at 768.527 kb on - strand, within AMB_RS03640at 768.527 kb on - strand, within AMB_RS03640at 768.527 kb on - strand, within AMB_RS03640at 768.676 kb on - strand, within AMB_RS03640at 768.799 kb on + strand, within AMB_RS03640at 768.799 kb on + strand, within AMB_RS03640at 768.799 kb on + strand, within AMB_RS03640at 768.800 kb on - strand, within AMB_RS03640at 768.800 kb on - strand, within AMB_RS03640at 768.800 kb on - strand, within AMB_RS03640at 768.800 kb on - strand, within AMB_RS03640at 768.800 kb on - strand, within AMB_RS03640at 768.800 kb on - strand, within AMB_RS03640at 768.800 kb on - strand, within AMB_RS03640at 768.848 kb on - strand, within AMB_RS03640at 769.048 kb on + strand, within AMB_RS03640at 769.048 kb on + strand, within AMB_RS03640at 769.048 kb on + strand, within AMB_RS03640at 769.049 kb on - strand, within AMB_RS03640at 769.049 kb on - strand, within AMB_RS03640at 769.177 kb on + strandat 769.177 kb on + strandat 769.177 kb on + strandat 769.177 kb on + strandat 769.177 kb on + strandat 769.177 kb on + strandat 769.178 kb on - strandat 769.178 kb on - strandat 769.178 kb on - strandat 769.178 kb on - strandat 769.178 kb on - strandat 769.178 kb on - strandat 769.231 kb on + strandat 769.231 kb on + strandat 769.231 kb on + strandat 769.231 kb on + strandat 769.231 kb on + strandat 769.232 kb on - strandat 769.232 kb on - strandat 769.232 kb on - strandat 769.458 kb on + strand, within AMB_RS03645at 769.458 kb on + strand, within AMB_RS03645at 769.459 kb on - strand, within AMB_RS03645at 769.662 kb on + strand, within AMB_RS03645at 769.663 kb on - strand, within AMB_RS03645at 769.701 kb on + strand, within AMB_RS03645at 769.701 kb on + strand, within AMB_RS03645at 769.702 kb on - strand, within AMB_RS03645at 769.702 kb on - strand, within AMB_RS03645at 769.718 kb on - strand, within AMB_RS03645at 769.718 kb on - strand, within AMB_RS03645at 769.718 kb on - strand, within AMB_RS03645at 770.131 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_nonmag_1
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767,243 + AMB_RS03635 0.61 -0.3
767,575 + AMB_RS03635 0.75 -0.9
767,575 + AMB_RS03635 0.75 +0.1
767,575 + AMB_RS03635 0.75 -0.1
767,576 - AMB_RS03635 0.75 -0.6
767,576 - AMB_RS03635 0.75 +0.1
767,576 - AMB_RS03635 0.75 +0.3
767,594 + AMB_RS03635 0.76 +0.5
767,595 - AMB_RS03635 0.76 -0.0
768,032 + +0.1
768,517 + AMB_RS03640 0.36 -0.0
768,517 + AMB_RS03640 0.36 -0.3
768,517 + AMB_RS03640 0.36 -0.5
768,518 - AMB_RS03640 0.36 +1.1
768,518 - AMB_RS03640 0.36 -0.7
768,518 - AMB_RS03640 0.36 -0.9
768,526 + AMB_RS03640 0.37 -0.2
768,527 - AMB_RS03640 0.37 +0.3
768,527 - AMB_RS03640 0.37 -0.3
768,527 - AMB_RS03640 0.37 +0.9
768,676 - AMB_RS03640 0.50 -0.2
768,799 + AMB_RS03640 0.61 -0.2
768,799 + AMB_RS03640 0.61 +0.6
768,799 + AMB_RS03640 0.61 -1.5
768,800 - AMB_RS03640 0.61 -1.1
768,800 - AMB_RS03640 0.61 -0.3
768,800 - AMB_RS03640 0.61 -0.6
768,800 - AMB_RS03640 0.61 +0.5
768,800 - AMB_RS03640 0.61 +0.7
768,800 - AMB_RS03640 0.61 +1.5
768,800 - AMB_RS03640 0.61 +0.5
768,848 - AMB_RS03640 0.66 -0.0
769,048 + AMB_RS03640 0.84 +0.1
769,048 + AMB_RS03640 0.84 -1.1
769,048 + AMB_RS03640 0.84 -0.2
769,049 - AMB_RS03640 0.84 -1.0
769,049 - AMB_RS03640 0.84 +0.1
769,177 + -0.7
769,177 + -0.4
769,177 + -0.2
769,177 + -1.1
769,177 + +0.0
769,177 + -0.3
769,178 - -0.4
769,178 - +0.1
769,178 - +0.7
769,178 - +0.5
769,178 - -1.1
769,178 - +0.1
769,231 + -0.5
769,231 + -0.9
769,231 + -0.2
769,231 + +0.2
769,231 + -0.1
769,232 - -0.2
769,232 - -0.1
769,232 - -0.0
769,458 + AMB_RS03645 0.12 -0.3
769,458 + AMB_RS03645 0.12 +0.5
769,459 - AMB_RS03645 0.13 -0.3
769,662 + AMB_RS03645 0.38 -0.2
769,663 - AMB_RS03645 0.39 -0.2
769,701 + AMB_RS03645 0.43 -0.8
769,701 + AMB_RS03645 0.43 -0.1
769,702 - AMB_RS03645 0.44 -0.7
769,702 - AMB_RS03645 0.44 +0.6
769,718 - AMB_RS03645 0.46 -1.0
769,718 - AMB_RS03645 0.46 -0.9
769,718 - AMB_RS03645 0.46 -0.6
770,131 + -1.1

Or see this region's nucleotide sequence