Experiment: 150_nonmag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS02605 and AMB_RS02610 are separated by 194 nucleotides AMB_RS02610 and AMB_RS02615 are separated by 4 nucleotides AMB_RS02615 and AMB_RS02620 are separated by 28 nucleotides
AMB_RS02605: AMB_RS02605 - flagellar hook-length control protein FliK, at 542,448 to 544,211
_RS02605
AMB_RS02610: AMB_RS02610 - hypothetical protein, at 544,406 to 544,666
_RS02610
AMB_RS02615: AMB_RS02615 - competence/damage-inducible protein A, at 544,671 to 545,405
_RS02615
AMB_RS02620: AMB_RS02620 - GNAT family N-acetyltransferase, at 545,434 to 546,417
_RS02620
Position (kb) 544
545 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 544.410 kb on + strand at 544.410 kb on + strand at 544.410 kb on + strand at 544.410 kb on + strand at 544.410 kb on + strand at 544.410 kb on + strand at 544.410 kb on + strand at 544.411 kb on - strand at 544.411 kb on - strand at 544.411 kb on - strand at 544.411 kb on - strand at 544.411 kb on - strand at 544.614 kb on + strand, within AMB_RS02610 at 544.614 kb on + strand, within AMB_RS02610 at 544.614 kb on + strand, within AMB_RS02610 at 545.218 kb on + strand, within AMB_RS02615 at 545.218 kb on + strand, within AMB_RS02615 at 545.218 kb on + strand, within AMB_RS02615 at 545.218 kb on + strand, within AMB_RS02615 at 545.218 kb on + strand, within AMB_RS02615 at 545.218 kb on + strand, within AMB_RS02615 at 545.218 kb on + strand, within AMB_RS02615 at 545.218 kb on + strand, within AMB_RS02615 at 545.218 kb on + strand, within AMB_RS02615 at 545.218 kb on + strand, within AMB_RS02615 at 545.218 kb on + strand, within AMB_RS02615 at 545.219 kb on - strand, within AMB_RS02615 at 545.219 kb on - strand, within AMB_RS02615 at 545.219 kb on - strand, within AMB_RS02615 at 545.219 kb on - strand, within AMB_RS02615 at 545.219 kb on - strand, within AMB_RS02615 at 545.219 kb on - strand, within AMB_RS02615 at 545.224 kb on + strand, within AMB_RS02615 at 545.224 kb on + strand, within AMB_RS02615 at 545.225 kb on - strand, within AMB_RS02615 at 545.245 kb on - strand, within AMB_RS02615 at 545.332 kb on + strand at 545.432 kb on + strand at 545.435 kb on + strand at 545.435 kb on + strand at 545.435 kb on + strand at 545.436 kb on - strand at 545.436 kb on - strand at 545.437 kb on + strand at 545.437 kb on + strand at 545.437 kb on + strand at 545.561 kb on - strand, within AMB_RS02620 at 545.573 kb on + strand, within AMB_RS02620 at 545.573 kb on + strand, within AMB_RS02620 at 545.573 kb on + strand, within AMB_RS02620 at 545.573 kb on + strand, within AMB_RS02620 at 545.574 kb on - strand, within AMB_RS02620 at 545.574 kb on - strand, within AMB_RS02620 at 545.574 kb on - strand, within AMB_RS02620 at 545.574 kb on - strand, within AMB_RS02620 at 545.603 kb on + strand, within AMB_RS02620 at 545.603 kb on + strand, within AMB_RS02620 at 545.603 kb on + strand, within AMB_RS02620 at 545.603 kb on + strand, within AMB_RS02620 at 545.604 kb on - strand, within AMB_RS02620 at 545.604 kb on - strand, within AMB_RS02620 at 545.632 kb on + strand, within AMB_RS02620
Per-strain Table
Position Strand Gene LocusTag Fraction 150_nonmag_1 remove 544,410 + +0.9 544,410 + -0.1 544,410 + -0.7 544,410 + -0.2 544,410 + -0.3 544,410 + -1.1 544,410 + -0.0 544,411 - +0.0 544,411 - -0.1 544,411 - -0.9 544,411 - -0.2 544,411 - -0.5 544,614 + AMB_RS02610 0.80 -0.2 544,614 + AMB_RS02610 0.80 -0.2 544,614 + AMB_RS02610 0.80 +0.2 545,218 + AMB_RS02615 0.74 +1.7 545,218 + AMB_RS02615 0.74 +0.2 545,218 + AMB_RS02615 0.74 -3.4 545,218 + AMB_RS02615 0.74 -0.9 545,218 + AMB_RS02615 0.74 -0.2 545,218 + AMB_RS02615 0.74 -0.1 545,218 + AMB_RS02615 0.74 -1.1 545,218 + AMB_RS02615 0.74 -0.1 545,218 + AMB_RS02615 0.74 -0.1 545,218 + AMB_RS02615 0.74 -0.4 545,218 + AMB_RS02615 0.74 +1.3 545,219 - AMB_RS02615 0.75 +0.5 545,219 - AMB_RS02615 0.75 -0.3 545,219 - AMB_RS02615 0.75 -1.0 545,219 - AMB_RS02615 0.75 +0.7 545,219 - AMB_RS02615 0.75 +0.1 545,219 - AMB_RS02615 0.75 +0.8 545,224 + AMB_RS02615 0.75 -0.3 545,224 + AMB_RS02615 0.75 -1.5 545,225 - AMB_RS02615 0.75 +0.5 545,245 - AMB_RS02615 0.78 -0.1 545,332 + -1.4 545,432 + -0.5 545,435 + -0.3 545,435 + -1.1 545,435 + -0.0 545,436 - +0.6 545,436 - -3.0 545,437 + -0.1 545,437 + -0.5 545,437 + -0.2 545,561 - AMB_RS02620 0.13 -2.5 545,573 + AMB_RS02620 0.14 +0.0 545,573 + AMB_RS02620 0.14 +0.7 545,573 + AMB_RS02620 0.14 +0.8 545,573 + AMB_RS02620 0.14 -1.1 545,574 - AMB_RS02620 0.14 +0.9 545,574 - AMB_RS02620 0.14 -0.2 545,574 - AMB_RS02620 0.14 -1.5 545,574 - AMB_RS02620 0.14 -0.4 545,603 + AMB_RS02620 0.17 -0.1 545,603 + AMB_RS02620 0.17 +0.1 545,603 + AMB_RS02620 0.17 -1.7 545,603 + AMB_RS02620 0.17 +0.2 545,604 - AMB_RS02620 0.17 -0.1 545,604 - AMB_RS02620 0.17 -0.5 545,632 + AMB_RS02620 0.20 +2.8
Or see this region's nucleotide sequence