Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS02250

Experiment: 150_nonmag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS02240 and AMB_RS02245 are separated by 23 nucleotidesAMB_RS02245 and AMB_RS02250 are separated by 148 nucleotidesAMB_RS02250 and AMB_RS02255 are separated by 201 nucleotidesAMB_RS02255 and AMB_RS02260 are separated by 92 nucleotides AMB_RS02240: AMB_RS02240 - surface lipoprotein, at 474,793 to 475,605 _RS02240 AMB_RS02245: AMB_RS02245 - ABC transporter, at 475,629 to 476,270 _RS02245 AMB_RS02250: AMB_RS02250 - hypothetical protein, at 476,419 to 480,750 _RS02250 AMB_RS02255: AMB_RS02255 - hypothetical protein, at 480,952 to 481,497 _RS02255 AMB_RS02260: AMB_RS02260 - hypothetical protein, at 481,590 to 482,405 _RS02260 Position (kb) 476 477 478 479 480 481Strain fitness (log2 ratio) -2 -1 0 1 2at 475.465 kb on + strand, within AMB_RS02240at 475.465 kb on + strand, within AMB_RS02240at 475.465 kb on + strand, within AMB_RS02240at 475.613 kb on + strandat 475.613 kb on + strandat 475.613 kb on + strandat 475.613 kb on + strandat 475.613 kb on + strandat 475.613 kb on + strandat 475.613 kb on + strandat 476.303 kb on - strandat 476.420 kb on + strandat 476.420 kb on + strandat 476.420 kb on + strandat 476.421 kb on - strandat 476.431 kb on + strandat 476.431 kb on + strandat 476.431 kb on + strandat 476.432 kb on - strandat 476.432 kb on - strandat 476.432 kb on - strandat 476.432 kb on - strandat 476.667 kb on + strandat 476.888 kb on + strand, within AMB_RS02250at 476.889 kb on - strand, within AMB_RS02250at 476.889 kb on - strand, within AMB_RS02250at 476.955 kb on + strand, within AMB_RS02250at 476.956 kb on - strand, within AMB_RS02250at 476.988 kb on + strand, within AMB_RS02250at 477.259 kb on + strand, within AMB_RS02250at 478.000 kb on + strand, within AMB_RS02250at 478.000 kb on + strand, within AMB_RS02250at 478.000 kb on + strand, within AMB_RS02250at 478.000 kb on + strand, within AMB_RS02250at 478.001 kb on - strand, within AMB_RS02250at 478.087 kb on - strand, within AMB_RS02250at 478.219 kb on + strand, within AMB_RS02250at 478.219 kb on + strand, within AMB_RS02250at 478.650 kb on + strand, within AMB_RS02250at 478.795 kb on + strand, within AMB_RS02250at 478.795 kb on + strand, within AMB_RS02250at 478.795 kb on + strand, within AMB_RS02250at 478.796 kb on - strand, within AMB_RS02250at 478.796 kb on - strand, within AMB_RS02250at 478.796 kb on - strand, within AMB_RS02250at 479.307 kb on + strand, within AMB_RS02250at 479.307 kb on + strand, within AMB_RS02250at 479.307 kb on + strand, within AMB_RS02250at 479.307 kb on + strand, within AMB_RS02250at 479.307 kb on + strand, within AMB_RS02250at 479.307 kb on + strand, within AMB_RS02250at 479.307 kb on + strand, within AMB_RS02250at 479.307 kb on + strand, within AMB_RS02250at 479.308 kb on - strand, within AMB_RS02250at 479.308 kb on - strand, within AMB_RS02250at 479.308 kb on - strand, within AMB_RS02250at 479.588 kb on - strand, within AMB_RS02250at 479.603 kb on - strand, within AMB_RS02250at 479.603 kb on - strand, within AMB_RS02250at 479.603 kb on - strand, within AMB_RS02250at 479.603 kb on - strand, within AMB_RS02250at 480.067 kb on + strand, within AMB_RS02250at 480.307 kb on + strand, within AMB_RS02250at 480.307 kb on + strand, within AMB_RS02250at 480.307 kb on + strand, within AMB_RS02250at 480.307 kb on + strand, within AMB_RS02250at 480.308 kb on - strand, within AMB_RS02250at 480.308 kb on - strand, within AMB_RS02250at 480.308 kb on - strand, within AMB_RS02250at 480.308 kb on - strand, within AMB_RS02250at 480.404 kb on - strandat 480.529 kb on + strandat 480.794 kb on + strandat 480.794 kb on + strandat 480.807 kb on + strandat 480.807 kb on + strandat 480.808 kb on - strandat 480.809 kb on + strandat 480.809 kb on + strandat 480.809 kb on + strandat 480.810 kb on - strandat 480.861 kb on + strandat 480.862 kb on - strandat 481.264 kb on + strand, within AMB_RS02255at 481.264 kb on + strand, within AMB_RS02255at 481.264 kb on + strand, within AMB_RS02255at 481.264 kb on + strand, within AMB_RS02255at 481.264 kb on + strand, within AMB_RS02255at 481.265 kb on - strand, within AMB_RS02255at 481.265 kb on - strand, within AMB_RS02255at 481.265 kb on - strand, within AMB_RS02255at 481.495 kb on + strandat 481.552 kb on + strandat 481.553 kb on - strandat 481.553 kb on - strandat 481.740 kb on + strand, within AMB_RS02260at 481.743 kb on + strand, within AMB_RS02260at 481.743 kb on + strand, within AMB_RS02260at 481.743 kb on + strand, within AMB_RS02260at 481.743 kb on + strand, within AMB_RS02260at 481.743 kb on + strand, within AMB_RS02260at 481.744 kb on - strand, within AMB_RS02260at 481.744 kb on - strand, within AMB_RS02260at 481.744 kb on - strand, within AMB_RS02260at 481.744 kb on - strand, within AMB_RS02260at 481.745 kb on + strand, within AMB_RS02260at 481.745 kb on + strand, within AMB_RS02260at 481.745 kb on + strand, within AMB_RS02260

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_nonmag_1
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475,465 + AMB_RS02240 0.83 -2.6
475,465 + AMB_RS02240 0.83 -0.6
475,465 + AMB_RS02240 0.83 +0.9
475,613 + -1.3
475,613 + -0.0
475,613 + -0.7
475,613 + -1.3
475,613 + -0.2
475,613 + +0.6
475,613 + -0.1
476,303 - +0.0
476,420 + +0.4
476,420 + -0.4
476,420 + -0.3
476,421 - -0.0
476,431 + -1.1
476,431 + +0.5
476,431 + -0.6
476,432 - -0.6
476,432 - +0.3
476,432 - -0.3
476,432 - -0.6
476,667 + -0.1
476,888 + AMB_RS02250 0.11 +1.1
476,889 - AMB_RS02250 0.11 +0.0
476,889 - AMB_RS02250 0.11 -0.2
476,955 + AMB_RS02250 0.12 -0.6
476,956 - AMB_RS02250 0.12 +0.8
476,988 + AMB_RS02250 0.13 +1.3
477,259 + AMB_RS02250 0.19 -0.2
478,000 + AMB_RS02250 0.36 -1.6
478,000 + AMB_RS02250 0.36 +0.2
478,000 + AMB_RS02250 0.36 -0.6
478,000 + AMB_RS02250 0.36 +0.0
478,001 - AMB_RS02250 0.37 -0.4
478,087 - AMB_RS02250 0.39 +0.1
478,219 + AMB_RS02250 0.42 +0.1
478,219 + AMB_RS02250 0.42 +0.2
478,650 + AMB_RS02250 0.52 -0.2
478,795 + AMB_RS02250 0.55 -0.5
478,795 + AMB_RS02250 0.55 -0.8
478,795 + AMB_RS02250 0.55 -0.5
478,796 - AMB_RS02250 0.55 -0.1
478,796 - AMB_RS02250 0.55 +0.3
478,796 - AMB_RS02250 0.55 -0.4
479,307 + AMB_RS02250 0.67 +0.7
479,307 + AMB_RS02250 0.67 -1.1
479,307 + AMB_RS02250 0.67 -0.0
479,307 + AMB_RS02250 0.67 -0.6
479,307 + AMB_RS02250 0.67 +1.5
479,307 + AMB_RS02250 0.67 +0.0
479,307 + AMB_RS02250 0.67 -0.7
479,307 + AMB_RS02250 0.67 +0.5
479,308 - AMB_RS02250 0.67 -0.5
479,308 - AMB_RS02250 0.67 +0.2
479,308 - AMB_RS02250 0.67 +1.0
479,588 - AMB_RS02250 0.73 +0.1
479,603 - AMB_RS02250 0.73 -1.6
479,603 - AMB_RS02250 0.73 -0.2
479,603 - AMB_RS02250 0.73 +0.4
479,603 - AMB_RS02250 0.73 -0.2
480,067 + AMB_RS02250 0.84 +0.4
480,307 + AMB_RS02250 0.90 +0.1
480,307 + AMB_RS02250 0.90 +0.7
480,307 + AMB_RS02250 0.90 +0.4
480,307 + AMB_RS02250 0.90 -0.1
480,308 - AMB_RS02250 0.90 -1.9
480,308 - AMB_RS02250 0.90 -1.0
480,308 - AMB_RS02250 0.90 -0.3
480,308 - AMB_RS02250 0.90 +0.2
480,404 - -0.6
480,529 + +0.6
480,794 + -0.5
480,794 + -0.2
480,807 + -1.3
480,807 + -0.9
480,808 - +0.5
480,809 + -1.6
480,809 + -0.1
480,809 + +0.5
480,810 - +0.4
480,861 + +0.4
480,862 - +0.6
481,264 + AMB_RS02255 0.57 -0.2
481,264 + AMB_RS02255 0.57 -0.9
481,264 + AMB_RS02255 0.57 +0.3
481,264 + AMB_RS02255 0.57 -0.1
481,264 + AMB_RS02255 0.57 +0.7
481,265 - AMB_RS02255 0.57 +0.9
481,265 - AMB_RS02255 0.57 -0.1
481,265 - AMB_RS02255 0.57 -0.2
481,495 + -1.6
481,552 + +0.2
481,553 - +0.4
481,553 - -0.8
481,740 + AMB_RS02260 0.18 -0.1
481,743 + AMB_RS02260 0.19 +0.1
481,743 + AMB_RS02260 0.19 +2.0
481,743 + AMB_RS02260 0.19 +0.6
481,743 + AMB_RS02260 0.19 -0.2
481,743 + AMB_RS02260 0.19 -0.3
481,744 - AMB_RS02260 0.19 -1.3
481,744 - AMB_RS02260 0.19 +0.1
481,744 - AMB_RS02260 0.19 -0.2
481,744 - AMB_RS02260 0.19 -1.2
481,745 + AMB_RS02260 0.19 -0.1
481,745 + AMB_RS02260 0.19 -0.6
481,745 + AMB_RS02260 0.19 +0.8

Or see this region's nucleotide sequence