Experiment: 150_nonmag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS23835 and AMB_RS02025 are separated by 20 nucleotides
AMB_RS23835: AMB_RS23835 - VWA domain-containing protein, at 426,172 to 428,502
_RS23835
AMB_RS02025: AMB_RS02025 - hypothetical protein, at 428,523 to 428,753
_RS02025
Position (kb) 428
429 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 427.555 kb on + strand, within AMB_RS23835 at 427.556 kb on - strand, within AMB_RS23835 at 427.556 kb on - strand, within AMB_RS23835 at 427.556 kb on - strand, within AMB_RS23835 at 427.659 kb on + strand, within AMB_RS23835 at 427.695 kb on + strand, within AMB_RS23835 at 427.711 kb on + strand, within AMB_RS23835 at 427.711 kb on + strand, within AMB_RS23835 at 427.711 kb on + strand, within AMB_RS23835 at 427.775 kb on + strand, within AMB_RS23835 at 427.775 kb on + strand, within AMB_RS23835 at 427.776 kb on - strand, within AMB_RS23835 at 427.811 kb on + strand, within AMB_RS23835 at 427.812 kb on - strand, within AMB_RS23835 at 428.025 kb on + strand, within AMB_RS23835 at 428.065 kb on + strand, within AMB_RS23835 at 428.156 kb on + strand, within AMB_RS23835 at 428.238 kb on + strand, within AMB_RS23835 at 428.272 kb on + strand at 428.293 kb on + strand at 428.299 kb on - strand at 428.544 kb on + strand at 428.544 kb on + strand at 428.639 kb on + strand, within AMB_RS02025 at 428.699 kb on - strand, within AMB_RS02025 at 428.754 kb on + strand at 428.787 kb on + strand at 428.803 kb on + strand at 428.845 kb on - strand at 429.283 kb on + strand at 429.283 kb on + strand at 429.329 kb on + strand at 429.329 kb on + strand at 429.329 kb on + strand at 429.329 kb on + strand at 429.330 kb on - strand at 429.330 kb on - strand at 429.378 kb on - strand at 429.438 kb on + strand at 429.633 kb on - strand at 429.723 kb on + strand at 429.723 kb on + strand at 429.723 kb on + strand at 429.724 kb on - strand at 429.726 kb on + strand at 429.726 kb on + strand at 429.727 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 150_nonmag_1 remove 427,555 + AMB_RS23835 0.59 -0.4 427,556 - AMB_RS23835 0.59 -0.2 427,556 - AMB_RS23835 0.59 -0.5 427,556 - AMB_RS23835 0.59 -0.0 427,659 + AMB_RS23835 0.64 +0.5 427,695 + AMB_RS23835 0.65 -1.4 427,711 + AMB_RS23835 0.66 -1.8 427,711 + AMB_RS23835 0.66 -1.1 427,711 + AMB_RS23835 0.66 -0.2 427,775 + AMB_RS23835 0.69 -1.6 427,775 + AMB_RS23835 0.69 -0.4 427,776 - AMB_RS23835 0.69 -0.0 427,811 + AMB_RS23835 0.70 +0.7 427,812 - AMB_RS23835 0.70 -0.9 428,025 + AMB_RS23835 0.79 -0.8 428,065 + AMB_RS23835 0.81 -0.7 428,156 + AMB_RS23835 0.85 -1.5 428,238 + AMB_RS23835 0.89 -0.0 428,272 + -1.0 428,293 + -0.4 428,299 - -0.9 428,544 + -0.0 428,544 + -0.8 428,639 + AMB_RS02025 0.50 -1.1 428,699 - AMB_RS02025 0.76 -1.4 428,754 + -1.1 428,787 + -0.3 428,803 + -0.9 428,845 - -1.9 429,283 + -0.1 429,283 + -0.9 429,329 + +1.2 429,329 + -0.8 429,329 + -0.9 429,329 + -0.5 429,330 - -2.4 429,330 - -0.8 429,378 - -0.0 429,438 + +0.6 429,633 - -0.3 429,723 + +3.3 429,723 + -0.5 429,723 + -0.6 429,724 - +0.1 429,726 + +0.5 429,726 + -0.5 429,727 - -0.5
Or see this region's nucleotide sequence