Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS00810

Experiment: 150_nonmag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS00800 and AMB_RS00805 overlap by 4 nucleotidesAMB_RS00805 and AMB_RS00810 overlap by 4 nucleotidesAMB_RS00810 and AMB_RS00815 are separated by 132 nucleotides AMB_RS00800: AMB_RS00800 - nucleoside-diphosphate-sugar pyrophosphorylase, at 181,516 to 182,259 _RS00800 AMB_RS00805: AMB_RS00805 - haloacid dehalogenase, at 182,256 to 182,888 _RS00805 AMB_RS00810: AMB_RS00810 - hypothetical protein, at 182,885 to 183,511 _RS00810 AMB_RS00815: AMB_RS00815 - hypothetical protein, at 183,644 to 184,747 _RS00815 Position (kb) 182 183 184Strain fitness (log2 ratio) -3 -2 -1 0 1at 181.942 kb on + strand, within AMB_RS00800at 181.942 kb on + strand, within AMB_RS00800at 181.942 kb on + strand, within AMB_RS00800at 181.942 kb on + strand, within AMB_RS00800at 181.942 kb on + strand, within AMB_RS00800at 181.943 kb on - strand, within AMB_RS00800at 181.943 kb on - strand, within AMB_RS00800at 181.943 kb on - strand, within AMB_RS00800at 181.943 kb on - strand, within AMB_RS00800at 182.150 kb on + strand, within AMB_RS00800at 182.150 kb on + strand, within AMB_RS00800at 182.150 kb on + strand, within AMB_RS00800at 182.150 kb on + strand, within AMB_RS00800at 182.151 kb on - strand, within AMB_RS00800at 182.151 kb on - strand, within AMB_RS00800at 182.151 kb on - strand, within AMB_RS00800at 182.303 kb on - strandat 182.372 kb on - strand, within AMB_RS00805at 182.372 kb on - strand, within AMB_RS00805at 182.437 kb on + strand, within AMB_RS00805at 182.437 kb on + strand, within AMB_RS00805at 182.437 kb on + strand, within AMB_RS00805at 182.437 kb on + strand, within AMB_RS00805at 182.437 kb on + strand, within AMB_RS00805at 182.437 kb on + strand, within AMB_RS00805at 182.437 kb on + strand, within AMB_RS00805at 182.437 kb on + strand, within AMB_RS00805at 182.437 kb on + strand, within AMB_RS00805at 182.437 kb on + strand, within AMB_RS00805at 182.437 kb on + strand, within AMB_RS00805at 182.438 kb on - strand, within AMB_RS00805at 182.438 kb on - strand, within AMB_RS00805at 182.438 kb on - strand, within AMB_RS00805at 182.438 kb on - strand, within AMB_RS00805at 182.438 kb on - strand, within AMB_RS00805at 182.438 kb on - strand, within AMB_RS00805at 182.438 kb on - strand, within AMB_RS00805at 182.438 kb on - strand, within AMB_RS00805at 182.438 kb on - strand, within AMB_RS00805at 182.438 kb on - strand, within AMB_RS00805at 182.438 kb on - strand, within AMB_RS00805at 182.438 kb on - strand, within AMB_RS00805at 182.438 kb on - strand, within AMB_RS00805at 182.438 kb on - strand, within AMB_RS00805at 182.438 kb on - strand, within AMB_RS00805at 182.438 kb on - strand, within AMB_RS00805at 182.438 kb on - strand, within AMB_RS00805at 182.438 kb on - strand, within AMB_RS00805at 182.438 kb on - strand, within AMB_RS00805at 182.438 kb on - strand, within AMB_RS00805at 182.497 kb on + strand, within AMB_RS00805at 182.498 kb on - strand, within AMB_RS00805at 182.498 kb on - strand, within AMB_RS00805at 182.498 kb on - strand, within AMB_RS00805at 182.498 kb on - strand, within AMB_RS00805at 182.498 kb on - strand, within AMB_RS00805at 182.498 kb on - strand, within AMB_RS00805at 182.505 kb on + strand, within AMB_RS00805at 182.505 kb on + strand, within AMB_RS00805at 182.505 kb on + strand, within AMB_RS00805at 182.506 kb on - strand, within AMB_RS00805at 182.506 kb on - strand, within AMB_RS00805at 182.506 kb on - strand, within AMB_RS00805at 182.572 kb on + strand, within AMB_RS00805at 182.572 kb on + strand, within AMB_RS00805at 182.572 kb on + strand, within AMB_RS00805at 182.572 kb on + strand, within AMB_RS00805at 182.572 kb on + strand, within AMB_RS00805at 182.572 kb on + strand, within AMB_RS00805at 182.572 kb on + strand, within AMB_RS00805at 182.573 kb on - strand, within AMB_RS00805at 182.573 kb on - strand, within AMB_RS00805at 182.573 kb on - strand, within AMB_RS00805at 182.573 kb on - strand, within AMB_RS00805at 182.573 kb on - strand, within AMB_RS00805at 182.573 kb on - strand, within AMB_RS00805at 182.573 kb on - strand, within AMB_RS00805at 182.573 kb on - strand, within AMB_RS00805at 182.573 kb on - strand, within AMB_RS00805at 182.602 kb on + strand, within AMB_RS00805at 182.602 kb on + strand, within AMB_RS00805at 182.602 kb on + strand, within AMB_RS00805at 182.651 kb on + strand, within AMB_RS00805at 182.651 kb on + strand, within AMB_RS00805at 182.651 kb on + strand, within AMB_RS00805at 182.651 kb on + strand, within AMB_RS00805at 182.651 kb on + strand, within AMB_RS00805at 182.651 kb on + strand, within AMB_RS00805at 182.652 kb on - strand, within AMB_RS00805at 182.652 kb on - strand, within AMB_RS00805at 182.652 kb on - strand, within AMB_RS00805at 182.652 kb on - strand, within AMB_RS00805at 182.652 kb on - strand, within AMB_RS00805at 182.652 kb on - strand, within AMB_RS00805at 182.653 kb on + strand, within AMB_RS00805at 182.653 kb on + strand, within AMB_RS00805at 182.653 kb on + strand, within AMB_RS00805at 182.653 kb on + strand, within AMB_RS00805at 182.653 kb on + strand, within AMB_RS00805at 182.654 kb on - strand, within AMB_RS00805at 182.654 kb on - strand, within AMB_RS00805at 182.654 kb on - strand, within AMB_RS00805at 182.654 kb on - strand, within AMB_RS00805at 182.654 kb on - strand, within AMB_RS00805at 182.654 kb on - strand, within AMB_RS00805at 182.654 kb on - strand, within AMB_RS00805at 182.654 kb on - strand, within AMB_RS00805at 182.654 kb on - strand, within AMB_RS00805at 182.654 kb on - strand, within AMB_RS00805at 182.654 kb on - strand, within AMB_RS00805at 182.719 kb on + strand, within AMB_RS00805at 182.719 kb on + strand, within AMB_RS00805at 182.719 kb on + strand, within AMB_RS00805at 182.719 kb on + strand, within AMB_RS00805at 182.719 kb on + strand, within AMB_RS00805at 182.719 kb on + strand, within AMB_RS00805at 182.720 kb on - strand, within AMB_RS00805at 182.720 kb on - strand, within AMB_RS00805at 182.720 kb on - strand, within AMB_RS00805at 182.720 kb on - strand, within AMB_RS00805at 183.111 kb on + strand, within AMB_RS00810at 183.111 kb on + strand, within AMB_RS00810at 183.112 kb on - strand, within AMB_RS00810at 183.112 kb on - strand, within AMB_RS00810at 183.112 kb on - strand, within AMB_RS00810at 183.112 kb on - strand, within AMB_RS00810at 183.112 kb on - strand, within AMB_RS00810at 183.112 kb on - strand, within AMB_RS00810at 183.114 kb on + strand, within AMB_RS00810at 183.115 kb on - strand, within AMB_RS00810at 183.115 kb on - strand, within AMB_RS00810at 183.115 kb on - strand, within AMB_RS00810at 183.115 kb on - strand, within AMB_RS00810at 183.174 kb on + strand, within AMB_RS00810at 183.174 kb on + strand, within AMB_RS00810at 183.175 kb on - strand, within AMB_RS00810at 183.175 kb on - strand, within AMB_RS00810at 183.175 kb on - strand, within AMB_RS00810at 183.213 kb on + strand, within AMB_RS00810at 183.213 kb on + strand, within AMB_RS00810at 183.213 kb on + strand, within AMB_RS00810at 183.214 kb on - strand, within AMB_RS00810at 183.214 kb on - strand, within AMB_RS00810at 183.538 kb on + strandat 183.538 kb on + strandat 183.538 kb on + strandat 183.539 kb on - strandat 183.539 kb on - strandat 183.631 kb on + strandat 183.632 kb on - strandat 183.632 kb on - strandat 183.632 kb on - strandat 183.632 kb on - strandat 183.632 kb on - strandat 183.632 kb on - strandat 183.658 kb on + strandat 183.658 kb on + strandat 183.658 kb on + strandat 183.715 kb on + strandat 183.761 kb on + strand, within AMB_RS00815at 183.761 kb on + strand, within AMB_RS00815at 183.761 kb on + strand, within AMB_RS00815at 183.761 kb on + strand, within AMB_RS00815at 183.761 kb on + strand, within AMB_RS00815at 183.761 kb on + strand, within AMB_RS00815at 183.761 kb on + strand, within AMB_RS00815at 183.761 kb on + strand, within AMB_RS00815at 183.762 kb on - strand, within AMB_RS00815at 183.762 kb on - strand, within AMB_RS00815at 184.133 kb on + strand, within AMB_RS00815at 184.133 kb on + strand, within AMB_RS00815at 184.133 kb on + strand, within AMB_RS00815at 184.133 kb on + strand, within AMB_RS00815at 184.133 kb on + strand, within AMB_RS00815at 184.134 kb on - strand, within AMB_RS00815at 184.134 kb on - strand, within AMB_RS00815at 184.134 kb on - strand, within AMB_RS00815at 184.338 kb on - strand, within AMB_RS00815at 184.346 kb on + strand, within AMB_RS00815at 184.346 kb on + strand, within AMB_RS00815at 184.346 kb on + strand, within AMB_RS00815at 184.346 kb on + strand, within AMB_RS00815at 184.346 kb on + strand, within AMB_RS00815at 184.346 kb on + strand, within AMB_RS00815at 184.347 kb on - strand, within AMB_RS00815at 184.410 kb on - strand, within AMB_RS00815at 184.424 kb on + strand, within AMB_RS00815at 184.424 kb on + strand, within AMB_RS00815at 184.424 kb on + strand, within AMB_RS00815at 184.424 kb on + strand, within AMB_RS00815at 184.425 kb on - strand, within AMB_RS00815at 184.454 kb on + strand, within AMB_RS00815at 184.454 kb on + strand, within AMB_RS00815at 184.454 kb on + strand, within AMB_RS00815at 184.454 kb on + strand, within AMB_RS00815at 184.454 kb on + strand, within AMB_RS00815at 184.454 kb on + strand, within AMB_RS00815at 184.454 kb on + strand, within AMB_RS00815at 184.454 kb on + strand, within AMB_RS00815at 184.454 kb on + strand, within AMB_RS00815at 184.454 kb on + strand, within AMB_RS00815at 184.454 kb on + strand, within AMB_RS00815at 184.454 kb on + strand, within AMB_RS00815at 184.454 kb on + strand, within AMB_RS00815at 184.454 kb on + strand, within AMB_RS00815at 184.454 kb on + strand, within AMB_RS00815at 184.454 kb on + strand, within AMB_RS00815at 184.455 kb on - strand, within AMB_RS00815at 184.455 kb on - strand, within AMB_RS00815at 184.455 kb on - strand, within AMB_RS00815at 184.455 kb on - strand, within AMB_RS00815at 184.455 kb on - strand, within AMB_RS00815at 184.455 kb on - strand, within AMB_RS00815at 184.456 kb on + strand, within AMB_RS00815

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_nonmag_1
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181,942 + AMB_RS00800 0.57 +1.5
181,942 + AMB_RS00800 0.57 -2.3
181,942 + AMB_RS00800 0.57 -3.3
181,942 + AMB_RS00800 0.57 -0.7
181,942 + AMB_RS00800 0.57 -1.5
181,943 - AMB_RS00800 0.57 -1.7
181,943 - AMB_RS00800 0.57 -1.8
181,943 - AMB_RS00800 0.57 -1.1
181,943 - AMB_RS00800 0.57 -2.5
182,150 + AMB_RS00800 0.85 -2.4
182,150 + AMB_RS00800 0.85 +0.2
182,150 + AMB_RS00800 0.85 -2.3
182,150 + AMB_RS00800 0.85 -1.5
182,151 - AMB_RS00800 0.85 -0.5
182,151 - AMB_RS00800 0.85 +1.5
182,151 - AMB_RS00800 0.85 -1.4
182,303 - -0.3
182,372 - AMB_RS00805 0.18 -1.5
182,372 - AMB_RS00805 0.18 -1.5
182,437 + AMB_RS00805 0.29 +0.5
182,437 + AMB_RS00805 0.29 -3.1
182,437 + AMB_RS00805 0.29 -0.1
182,437 + AMB_RS00805 0.29 -0.8
182,437 + AMB_RS00805 0.29 -0.9
182,437 + AMB_RS00805 0.29 -0.1
182,437 + AMB_RS00805 0.29 -1.1
182,437 + AMB_RS00805 0.29 +0.5
182,437 + AMB_RS00805 0.29 -1.7
182,437 + AMB_RS00805 0.29 -1.4
182,437 + AMB_RS00805 0.29 -0.8
182,438 - AMB_RS00805 0.29 -1.1
182,438 - AMB_RS00805 0.29 +1.2
182,438 - AMB_RS00805 0.29 -1.1
182,438 - AMB_RS00805 0.29 -2.5
182,438 - AMB_RS00805 0.29 -0.5
182,438 - AMB_RS00805 0.29 -2.1
182,438 - AMB_RS00805 0.29 -0.9
182,438 - AMB_RS00805 0.29 -0.5
182,438 - AMB_RS00805 0.29 -2.8
182,438 - AMB_RS00805 0.29 -2.9
182,438 - AMB_RS00805 0.29 -0.4
182,438 - AMB_RS00805 0.29 -1.8
182,438 - AMB_RS00805 0.29 -0.0
182,438 - AMB_RS00805 0.29 -1.7
182,438 - AMB_RS00805 0.29 -1.9
182,438 - AMB_RS00805 0.29 -1.6
182,438 - AMB_RS00805 0.29 -0.8
182,438 - AMB_RS00805 0.29 -1.1
182,438 - AMB_RS00805 0.29 -0.3
182,438 - AMB_RS00805 0.29 -1.3
182,497 + AMB_RS00805 0.38 -2.7
182,498 - AMB_RS00805 0.38 -2.8
182,498 - AMB_RS00805 0.38 -1.6
182,498 - AMB_RS00805 0.38 -1.8
182,498 - AMB_RS00805 0.38 +0.5
182,498 - AMB_RS00805 0.38 -0.5
182,498 - AMB_RS00805 0.38 -1.5
182,505 + AMB_RS00805 0.39 -0.5
182,505 + AMB_RS00805 0.39 -1.1
182,505 + AMB_RS00805 0.39 -1.8
182,506 - AMB_RS00805 0.39 -0.3
182,506 - AMB_RS00805 0.39 -0.3
182,506 - AMB_RS00805 0.39 +0.5
182,572 + AMB_RS00805 0.50 -1.5
182,572 + AMB_RS00805 0.50 -1.5
182,572 + AMB_RS00805 0.50 -0.2
182,572 + AMB_RS00805 0.50 -1.1
182,572 + AMB_RS00805 0.50 -1.6
182,572 + AMB_RS00805 0.50 -2.3
182,572 + AMB_RS00805 0.50 +0.9
182,573 - AMB_RS00805 0.50 -0.5
182,573 - AMB_RS00805 0.50 +0.3
182,573 - AMB_RS00805 0.50 -0.6
182,573 - AMB_RS00805 0.50 -0.5
182,573 - AMB_RS00805 0.50 -0.7
182,573 - AMB_RS00805 0.50 -1.4
182,573 - AMB_RS00805 0.50 -0.8
182,573 - AMB_RS00805 0.50 -1.0
182,573 - AMB_RS00805 0.50 -0.1
182,602 + AMB_RS00805 0.55 -1.4
182,602 + AMB_RS00805 0.55 -0.9
182,602 + AMB_RS00805 0.55 -1.7
182,651 + AMB_RS00805 0.62 -1.1
182,651 + AMB_RS00805 0.62 -1.6
182,651 + AMB_RS00805 0.62 -2.5
182,651 + AMB_RS00805 0.62 -2.5
182,651 + AMB_RS00805 0.62 -1.5
182,651 + AMB_RS00805 0.62 -0.2
182,652 - AMB_RS00805 0.63 -1.8
182,652 - AMB_RS00805 0.63 -1.1
182,652 - AMB_RS00805 0.63 -0.5
182,652 - AMB_RS00805 0.63 -0.5
182,652 - AMB_RS00805 0.63 +0.0
182,652 - AMB_RS00805 0.63 -0.9
182,653 + AMB_RS00805 0.63 -0.5
182,653 + AMB_RS00805 0.63 -2.8
182,653 + AMB_RS00805 0.63 -0.2
182,653 + AMB_RS00805 0.63 +0.1
182,653 + AMB_RS00805 0.63 -3.3
182,654 - AMB_RS00805 0.63 -0.1
182,654 - AMB_RS00805 0.63 -2.1
182,654 - AMB_RS00805 0.63 -0.6
182,654 - AMB_RS00805 0.63 -0.5
182,654 - AMB_RS00805 0.63 -0.7
182,654 - AMB_RS00805 0.63 -1.5
182,654 - AMB_RS00805 0.63 +0.2
182,654 - AMB_RS00805 0.63 -1.3
182,654 - AMB_RS00805 0.63 -0.7
182,654 - AMB_RS00805 0.63 -1.8
182,654 - AMB_RS00805 0.63 -2.4
182,719 + AMB_RS00805 0.73 -2.1
182,719 + AMB_RS00805 0.73 -3.1
182,719 + AMB_RS00805 0.73 -0.8
182,719 + AMB_RS00805 0.73 -0.1
182,719 + AMB_RS00805 0.73 -0.8
182,719 + AMB_RS00805 0.73 -1.3
182,720 - AMB_RS00805 0.73 -1.1
182,720 - AMB_RS00805 0.73 -1.8
182,720 - AMB_RS00805 0.73 -0.8
182,720 - AMB_RS00805 0.73 -0.5
183,111 + AMB_RS00810 0.36 -2.0
183,111 + AMB_RS00810 0.36 -2.6
183,112 - AMB_RS00810 0.36 -0.0
183,112 - AMB_RS00810 0.36 -3.4
183,112 - AMB_RS00810 0.36 -2.1
183,112 - AMB_RS00810 0.36 +0.3
183,112 - AMB_RS00810 0.36 -1.6
183,112 - AMB_RS00810 0.36 -2.5
183,114 + AMB_RS00810 0.37 -0.2
183,115 - AMB_RS00810 0.37 -0.0
183,115 - AMB_RS00810 0.37 -0.1
183,115 - AMB_RS00810 0.37 -1.2
183,115 - AMB_RS00810 0.37 -2.3
183,174 + AMB_RS00810 0.46 -0.6
183,174 + AMB_RS00810 0.46 +0.8
183,175 - AMB_RS00810 0.46 -1.1
183,175 - AMB_RS00810 0.46 -2.0
183,175 - AMB_RS00810 0.46 -0.3
183,213 + AMB_RS00810 0.52 -0.5
183,213 + AMB_RS00810 0.52 -2.1
183,213 + AMB_RS00810 0.52 -1.2
183,214 - AMB_RS00810 0.52 -1.2
183,214 - AMB_RS00810 0.52 +0.0
183,538 + -2.3
183,538 + -1.8
183,538 + -0.1
183,539 - -1.2
183,539 - +0.5
183,631 + +0.2
183,632 - +1.1
183,632 - -0.4
183,632 - +1.5
183,632 - -0.6
183,632 - -0.3
183,632 - -0.6
183,658 + -1.5
183,658 + -1.1
183,658 + -0.7
183,715 + -2.0
183,761 + AMB_RS00815 0.11 -0.8
183,761 + AMB_RS00815 0.11 -1.5
183,761 + AMB_RS00815 0.11 -0.9
183,761 + AMB_RS00815 0.11 -1.2
183,761 + AMB_RS00815 0.11 -1.7
183,761 + AMB_RS00815 0.11 -1.0
183,761 + AMB_RS00815 0.11 +0.8
183,761 + AMB_RS00815 0.11 -1.5
183,762 - AMB_RS00815 0.11 -0.7
183,762 - AMB_RS00815 0.11 -2.3
184,133 + AMB_RS00815 0.44 -2.8
184,133 + AMB_RS00815 0.44 -1.4
184,133 + AMB_RS00815 0.44 -2.1
184,133 + AMB_RS00815 0.44 -1.6
184,133 + AMB_RS00815 0.44 -1.4
184,134 - AMB_RS00815 0.44 -1.1
184,134 - AMB_RS00815 0.44 -1.1
184,134 - AMB_RS00815 0.44 -1.5
184,338 - AMB_RS00815 0.63 -2.7
184,346 + AMB_RS00815 0.64 +0.5
184,346 + AMB_RS00815 0.64 +1.5
184,346 + AMB_RS00815 0.64 -1.1
184,346 + AMB_RS00815 0.64 +0.5
184,346 + AMB_RS00815 0.64 -1.0
184,346 + AMB_RS00815 0.64 -0.8
184,347 - AMB_RS00815 0.64 -1.3
184,410 - AMB_RS00815 0.69 -1.7
184,424 + AMB_RS00815 0.71 -0.8
184,424 + AMB_RS00815 0.71 -1.9
184,424 + AMB_RS00815 0.71 -1.4
184,424 + AMB_RS00815 0.71 -1.7
184,425 - AMB_RS00815 0.71 -0.2
184,454 + AMB_RS00815 0.73 +0.4
184,454 + AMB_RS00815 0.73 -0.3
184,454 + AMB_RS00815 0.73 -0.5
184,454 + AMB_RS00815 0.73 -2.1
184,454 + AMB_RS00815 0.73 -0.8
184,454 + AMB_RS00815 0.73 -2.1
184,454 + AMB_RS00815 0.73 -0.5
184,454 + AMB_RS00815 0.73 -0.1
184,454 + AMB_RS00815 0.73 -0.9
184,454 + AMB_RS00815 0.73 -1.1
184,454 + AMB_RS00815 0.73 -2.8
184,454 + AMB_RS00815 0.73 -3.1
184,454 + AMB_RS00815 0.73 -0.3
184,454 + AMB_RS00815 0.73 +0.5
184,454 + AMB_RS00815 0.73 -0.5
184,454 + AMB_RS00815 0.73 +0.1
184,455 - AMB_RS00815 0.73 +0.5
184,455 - AMB_RS00815 0.73 -2.2
184,455 - AMB_RS00815 0.73 +0.2
184,455 - AMB_RS00815 0.73 -0.2
184,455 - AMB_RS00815 0.73 +1.5
184,455 - AMB_RS00815 0.73 -1.5
184,456 + AMB_RS00815 0.74 -2.8

Or see this region's nucleotide sequence