Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS00590

Experiment: 150_nonmag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS00580 and AMB_RS00585 are separated by 139 nucleotidesAMB_RS00585 and AMB_RS00590 are separated by 27 nucleotidesAMB_RS00590 and AMB_RS00595 are separated by 3 nucleotides AMB_RS00580: AMB_RS00580 - glycosyltransferase, at 132,987 to 134,021 _RS00580 AMB_RS00585: AMB_RS00585 - hypothetical protein, at 134,161 to 134,868 _RS00585 AMB_RS00590: AMB_RS00590 - radical SAM protein, at 134,896 to 135,693 _RS00590 AMB_RS00595: AMB_RS00595 - B12-binding domain-containing radical SAM protein, at 135,697 to 137,157 _RS00595 Position (kb) 134 135 136Strain fitness (log2 ratio) -3 -2 -1 0 1at 133.963 kb on - strandat 134.182 kb on + strandat 134.199 kb on + strandat 134.200 kb on - strandat 134.220 kb on + strandat 134.239 kb on + strand, within AMB_RS00585at 134.239 kb on + strand, within AMB_RS00585at 134.239 kb on + strand, within AMB_RS00585at 134.239 kb on + strand, within AMB_RS00585at 134.240 kb on - strand, within AMB_RS00585at 134.240 kb on - strand, within AMB_RS00585at 134.295 kb on + strand, within AMB_RS00585at 134.295 kb on + strand, within AMB_RS00585at 134.363 kb on + strand, within AMB_RS00585at 134.497 kb on + strand, within AMB_RS00585at 134.498 kb on - strand, within AMB_RS00585at 134.498 kb on - strand, within AMB_RS00585at 134.498 kb on - strand, within AMB_RS00585at 134.498 kb on - strand, within AMB_RS00585at 134.498 kb on - strand, within AMB_RS00585at 134.498 kb on - strand, within AMB_RS00585at 134.498 kb on - strand, within AMB_RS00585at 134.498 kb on - strand, within AMB_RS00585at 134.599 kb on + strand, within AMB_RS00585at 134.600 kb on - strand, within AMB_RS00585at 134.662 kb on + strand, within AMB_RS00585at 134.662 kb on + strand, within AMB_RS00585at 134.663 kb on - strand, within AMB_RS00585at 134.663 kb on - strand, within AMB_RS00585at 134.708 kb on - strand, within AMB_RS00585at 134.719 kb on + strand, within AMB_RS00585at 134.720 kb on - strand, within AMB_RS00585at 134.725 kb on - strand, within AMB_RS00585at 134.725 kb on - strand, within AMB_RS00585at 134.748 kb on + strand, within AMB_RS00585at 134.767 kb on + strand, within AMB_RS00585at 134.768 kb on - strand, within AMB_RS00585at 134.768 kb on - strand, within AMB_RS00585at 134.769 kb on + strand, within AMB_RS00585at 134.770 kb on - strand, within AMB_RS00585at 134.800 kb on + strandat 134.859 kb on + strandat 134.866 kb on + strandat 134.867 kb on - strandat 134.867 kb on - strandat 134.867 kb on - strandat 135.196 kb on + strand, within AMB_RS00590at 135.196 kb on + strand, within AMB_RS00590at 135.196 kb on + strand, within AMB_RS00590at 135.197 kb on - strand, within AMB_RS00590at 135.197 kb on - strand, within AMB_RS00590at 135.201 kb on + strand, within AMB_RS00590at 135.201 kb on + strand, within AMB_RS00590at 135.202 kb on - strand, within AMB_RS00590at 135.202 kb on - strand, within AMB_RS00590at 135.229 kb on + strand, within AMB_RS00590at 135.230 kb on - strand, within AMB_RS00590at 135.370 kb on - strand, within AMB_RS00590at 135.445 kb on + strand, within AMB_RS00590at 135.445 kb on + strand, within AMB_RS00590at 135.513 kb on + strand, within AMB_RS00590at 135.514 kb on - strand, within AMB_RS00590at 135.577 kb on + strand, within AMB_RS00590at 135.578 kb on - strand, within AMB_RS00590at 135.578 kb on - strand, within AMB_RS00590at 135.612 kb on + strand, within AMB_RS00590at 135.612 kb on + strand, within AMB_RS00590at 135.612 kb on + strand, within AMB_RS00590at 135.613 kb on - strand, within AMB_RS00590at 135.613 kb on - strand, within AMB_RS00590at 135.616 kb on + strandat 135.616 kb on + strandat 135.648 kb on + strandat 135.649 kb on - strandat 135.711 kb on - strandat 135.748 kb on - strandat 135.766 kb on + strandat 135.766 kb on + strandat 135.767 kb on - strandat 135.767 kb on - strandat 135.767 kb on - strandat 135.767 kb on - strandat 135.887 kb on - strand, within AMB_RS00595at 136.036 kb on + strand, within AMB_RS00595at 136.036 kb on + strand, within AMB_RS00595at 136.037 kb on - strand, within AMB_RS00595at 136.291 kb on + strand, within AMB_RS00595at 136.292 kb on - strand, within AMB_RS00595at 136.366 kb on + strand, within AMB_RS00595at 136.366 kb on + strand, within AMB_RS00595at 136.367 kb on - strand, within AMB_RS00595at 136.367 kb on - strand, within AMB_RS00595at 136.367 kb on - strand, within AMB_RS00595at 136.367 kb on - strand, within AMB_RS00595at 136.388 kb on - strand, within AMB_RS00595at 136.498 kb on + strand, within AMB_RS00595at 136.522 kb on + strand, within AMB_RS00595at 136.674 kb on + strand, within AMB_RS00595at 136.674 kb on + strand, within AMB_RS00595at 136.678 kb on + strand, within AMB_RS00595at 136.679 kb on - strand, within AMB_RS00595at 136.679 kb on - strand, within AMB_RS00595at 136.679 kb on - strand, within AMB_RS00595

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_nonmag_1
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133,963 - +0.2
134,182 + +0.3
134,199 + -0.1
134,200 - +0.5
134,220 + +0.5
134,239 + AMB_RS00585 0.11 -0.2
134,239 + AMB_RS00585 0.11 +0.4
134,239 + AMB_RS00585 0.11 +0.7
134,239 + AMB_RS00585 0.11 -0.3
134,240 - AMB_RS00585 0.11 -0.1
134,240 - AMB_RS00585 0.11 -0.0
134,295 + AMB_RS00585 0.19 -1.5
134,295 + AMB_RS00585 0.19 +0.2
134,363 + AMB_RS00585 0.29 -0.0
134,497 + AMB_RS00585 0.47 -3.3
134,498 - AMB_RS00585 0.48 +0.4
134,498 - AMB_RS00585 0.48 -0.3
134,498 - AMB_RS00585 0.48 -0.7
134,498 - AMB_RS00585 0.48 -0.3
134,498 - AMB_RS00585 0.48 -0.9
134,498 - AMB_RS00585 0.48 +0.1
134,498 - AMB_RS00585 0.48 -0.4
134,498 - AMB_RS00585 0.48 +0.3
134,599 + AMB_RS00585 0.62 -0.8
134,600 - AMB_RS00585 0.62 -0.9
134,662 + AMB_RS00585 0.71 -0.3
134,662 + AMB_RS00585 0.71 +0.1
134,663 - AMB_RS00585 0.71 -0.6
134,663 - AMB_RS00585 0.71 +0.1
134,708 - AMB_RS00585 0.77 +0.3
134,719 + AMB_RS00585 0.79 -0.4
134,720 - AMB_RS00585 0.79 -0.2
134,725 - AMB_RS00585 0.80 +0.0
134,725 - AMB_RS00585 0.80 -0.5
134,748 + AMB_RS00585 0.83 +0.2
134,767 + AMB_RS00585 0.86 +0.1
134,768 - AMB_RS00585 0.86 +0.0
134,768 - AMB_RS00585 0.86 -0.8
134,769 + AMB_RS00585 0.86 +1.2
134,770 - AMB_RS00585 0.86 -2.3
134,800 + -0.5
134,859 + +0.5
134,866 + -2.1
134,867 - -0.8
134,867 - -0.4
134,867 - +0.3
135,196 + AMB_RS00590 0.38 -1.1
135,196 + AMB_RS00590 0.38 -0.4
135,196 + AMB_RS00590 0.38 -0.2
135,197 - AMB_RS00590 0.38 -0.2
135,197 - AMB_RS00590 0.38 +0.1
135,201 + AMB_RS00590 0.38 -2.3
135,201 + AMB_RS00590 0.38 -0.2
135,202 - AMB_RS00590 0.38 +0.5
135,202 - AMB_RS00590 0.38 -0.1
135,229 + AMB_RS00590 0.42 -1.1
135,230 - AMB_RS00590 0.42 +0.5
135,370 - AMB_RS00590 0.59 -0.0
135,445 + AMB_RS00590 0.69 +0.1
135,445 + AMB_RS00590 0.69 +0.5
135,513 + AMB_RS00590 0.77 +0.0
135,514 - AMB_RS00590 0.77 +0.5
135,577 + AMB_RS00590 0.85 +0.0
135,578 - AMB_RS00590 0.85 -1.5
135,578 - AMB_RS00590 0.85 -1.2
135,612 + AMB_RS00590 0.90 -0.7
135,612 + AMB_RS00590 0.90 +0.7
135,612 + AMB_RS00590 0.90 -0.9
135,613 - AMB_RS00590 0.90 -1.0
135,613 - AMB_RS00590 0.90 -0.2
135,616 + +0.4
135,616 + -0.3
135,648 + +0.2
135,649 - -1.5
135,711 - +0.4
135,748 - -0.6
135,766 + -0.1
135,766 + -0.6
135,767 - +0.1
135,767 - +0.1
135,767 - -0.4
135,767 - -0.4
135,887 - AMB_RS00595 0.13 +0.2
136,036 + AMB_RS00595 0.23 -0.9
136,036 + AMB_RS00595 0.23 +0.6
136,037 - AMB_RS00595 0.23 +0.5
136,291 + AMB_RS00595 0.41 -0.2
136,292 - AMB_RS00595 0.41 +0.1
136,366 + AMB_RS00595 0.46 +0.9
136,366 + AMB_RS00595 0.46 +0.1
136,367 - AMB_RS00595 0.46 -0.1
136,367 - AMB_RS00595 0.46 +0.0
136,367 - AMB_RS00595 0.46 -0.0
136,367 - AMB_RS00595 0.46 -1.7
136,388 - AMB_RS00595 0.47 -0.1
136,498 + AMB_RS00595 0.55 -0.9
136,522 + AMB_RS00595 0.56 -0.1
136,674 + AMB_RS00595 0.67 -0.2
136,674 + AMB_RS00595 0.67 -1.9
136,678 + AMB_RS00595 0.67 -0.9
136,679 - AMB_RS00595 0.67 -0.6
136,679 - AMB_RS00595 0.67 -0.1
136,679 - AMB_RS00595 0.67 -1.1

Or see this region's nucleotide sequence