Experiment: 150_nonmag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS23095 and AMB_RS00580 are separated by 69 nucleotides AMB_RS00580 and AMB_RS00585 are separated by 139 nucleotides AMB_RS00585 and AMB_RS00590 are separated by 27 nucleotides
AMB_RS23095: AMB_RS23095 - class I SAM-dependent methyltransferase, at 131,919 to 132,917
_RS23095
AMB_RS00580: AMB_RS00580 - glycosyltransferase, at 132,987 to 134,021
_RS00580
AMB_RS00585: AMB_RS00585 - hypothetical protein, at 134,161 to 134,868
_RS00585
AMB_RS00590: AMB_RS00590 - radical SAM protein, at 134,896 to 135,693
_RS00590
Position (kb)
132
133
134
135 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 131.994 kb on - strand at 132.121 kb on - strand, within AMB_RS23095 at 132.362 kb on + strand, within AMB_RS23095 at 132.392 kb on + strand, within AMB_RS23095 at 132.437 kb on + strand, within AMB_RS23095 at 132.437 kb on + strand, within AMB_RS23095 at 132.438 kb on - strand, within AMB_RS23095 at 132.438 kb on - strand, within AMB_RS23095 at 132.438 kb on - strand, within AMB_RS23095 at 132.562 kb on + strand, within AMB_RS23095 at 132.562 kb on + strand, within AMB_RS23095 at 132.562 kb on + strand, within AMB_RS23095 at 132.562 kb on + strand, within AMB_RS23095 at 132.562 kb on + strand, within AMB_RS23095 at 132.562 kb on + strand, within AMB_RS23095 at 132.562 kb on + strand, within AMB_RS23095 at 132.563 kb on - strand, within AMB_RS23095 at 132.563 kb on - strand, within AMB_RS23095 at 132.563 kb on - strand, within AMB_RS23095 at 132.563 kb on - strand, within AMB_RS23095 at 132.565 kb on - strand, within AMB_RS23095 at 132.624 kb on + strand, within AMB_RS23095 at 132.624 kb on + strand, within AMB_RS23095 at 132.624 kb on + strand, within AMB_RS23095 at 132.625 kb on - strand, within AMB_RS23095 at 132.625 kb on - strand, within AMB_RS23095 at 132.625 kb on - strand, within AMB_RS23095 at 132.625 kb on - strand, within AMB_RS23095 at 132.703 kb on + strand, within AMB_RS23095 at 132.864 kb on + strand at 132.915 kb on + strand at 132.915 kb on + strand at 132.915 kb on + strand at 132.916 kb on - strand at 132.916 kb on - strand at 132.928 kb on - strand at 132.947 kb on - strand at 133.017 kb on + strand at 133.017 kb on + strand at 133.017 kb on + strand at 133.017 kb on + strand at 133.018 kb on - strand at 133.018 kb on - strand at 133.018 kb on - strand at 133.083 kb on + strand at 133.114 kb on - strand, within AMB_RS00580 at 133.198 kb on + strand, within AMB_RS00580 at 133.369 kb on + strand, within AMB_RS00580 at 133.370 kb on - strand, within AMB_RS00580 at 133.418 kb on + strand, within AMB_RS00580 at 133.419 kb on - strand, within AMB_RS00580 at 133.430 kb on + strand, within AMB_RS00580 at 133.540 kb on + strand, within AMB_RS00580 at 133.542 kb on + strand, within AMB_RS00580 at 133.650 kb on + strand, within AMB_RS00580 at 133.650 kb on + strand, within AMB_RS00580 at 133.650 kb on + strand, within AMB_RS00580 at 133.651 kb on - strand, within AMB_RS00580 at 133.651 kb on - strand, within AMB_RS00580 at 133.651 kb on - strand, within AMB_RS00580 at 133.651 kb on - strand, within AMB_RS00580 at 133.665 kb on + strand, within AMB_RS00580 at 133.963 kb on - strand at 134.182 kb on + strand at 134.199 kb on + strand at 134.200 kb on - strand at 134.220 kb on + strand at 134.239 kb on + strand, within AMB_RS00585 at 134.239 kb on + strand, within AMB_RS00585 at 134.239 kb on + strand, within AMB_RS00585 at 134.239 kb on + strand, within AMB_RS00585 at 134.240 kb on - strand, within AMB_RS00585 at 134.240 kb on - strand, within AMB_RS00585 at 134.295 kb on + strand, within AMB_RS00585 at 134.295 kb on + strand, within AMB_RS00585 at 134.363 kb on + strand, within AMB_RS00585 at 134.497 kb on + strand, within AMB_RS00585 at 134.498 kb on - strand, within AMB_RS00585 at 134.498 kb on - strand, within AMB_RS00585 at 134.498 kb on - strand, within AMB_RS00585 at 134.498 kb on - strand, within AMB_RS00585 at 134.498 kb on - strand, within AMB_RS00585 at 134.498 kb on - strand, within AMB_RS00585 at 134.498 kb on - strand, within AMB_RS00585 at 134.498 kb on - strand, within AMB_RS00585 at 134.599 kb on + strand, within AMB_RS00585 at 134.600 kb on - strand, within AMB_RS00585 at 134.662 kb on + strand, within AMB_RS00585 at 134.662 kb on + strand, within AMB_RS00585 at 134.663 kb on - strand, within AMB_RS00585 at 134.663 kb on - strand, within AMB_RS00585 at 134.708 kb on - strand, within AMB_RS00585 at 134.719 kb on + strand, within AMB_RS00585 at 134.720 kb on - strand, within AMB_RS00585 at 134.725 kb on - strand, within AMB_RS00585 at 134.725 kb on - strand, within AMB_RS00585 at 134.748 kb on + strand, within AMB_RS00585 at 134.767 kb on + strand, within AMB_RS00585 at 134.768 kb on - strand, within AMB_RS00585 at 134.768 kb on - strand, within AMB_RS00585 at 134.769 kb on + strand, within AMB_RS00585 at 134.770 kb on - strand, within AMB_RS00585 at 134.800 kb on + strand at 134.859 kb on + strand at 134.866 kb on + strand at 134.867 kb on - strand at 134.867 kb on - strand at 134.867 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 150_nonmag_1 remove 131,994 - -0.2 132,121 - AMB_RS23095 0.20 -0.9 132,362 + AMB_RS23095 0.44 +1.9 132,392 + AMB_RS23095 0.47 -1.4 132,437 + AMB_RS23095 0.52 -0.3 132,437 + AMB_RS23095 0.52 -0.5 132,438 - AMB_RS23095 0.52 -0.2 132,438 - AMB_RS23095 0.52 +1.1 132,438 - AMB_RS23095 0.52 -0.3 132,562 + AMB_RS23095 0.64 -1.2 132,562 + AMB_RS23095 0.64 -1.9 132,562 + AMB_RS23095 0.64 -0.6 132,562 + AMB_RS23095 0.64 -2.2 132,562 + AMB_RS23095 0.64 -1.5 132,562 + AMB_RS23095 0.64 -0.5 132,562 + AMB_RS23095 0.64 -0.6 132,563 - AMB_RS23095 0.64 -0.6 132,563 - AMB_RS23095 0.64 -2.5 132,563 - AMB_RS23095 0.64 -2.1 132,563 - AMB_RS23095 0.64 -0.5 132,565 - AMB_RS23095 0.65 -1.0 132,624 + AMB_RS23095 0.71 -1.0 132,624 + AMB_RS23095 0.71 -1.5 132,624 + AMB_RS23095 0.71 -1.2 132,625 - AMB_RS23095 0.71 -0.9 132,625 - AMB_RS23095 0.71 -2.3 132,625 - AMB_RS23095 0.71 -1.5 132,625 - AMB_RS23095 0.71 -1.4 132,703 + AMB_RS23095 0.78 -1.5 132,864 + -1.5 132,915 + -1.0 132,915 + -0.8 132,915 + -0.0 132,916 - -0.0 132,916 - -0.5 132,928 - -0.8 132,947 - -0.4 133,017 + +0.5 133,017 + -0.7 133,017 + -0.5 133,017 + -1.8 133,018 - +1.5 133,018 - -0.2 133,018 - -0.9 133,083 + -1.4 133,114 - AMB_RS00580 0.12 +0.0 133,198 + AMB_RS00580 0.20 -0.2 133,369 + AMB_RS00580 0.37 -0.3 133,370 - AMB_RS00580 0.37 -0.7 133,418 + AMB_RS00580 0.42 +0.7 133,419 - AMB_RS00580 0.42 -1.2 133,430 + AMB_RS00580 0.43 +0.5 133,540 + AMB_RS00580 0.53 -0.4 133,542 + AMB_RS00580 0.54 -0.8 133,650 + AMB_RS00580 0.64 -1.8 133,650 + AMB_RS00580 0.64 -0.4 133,650 + AMB_RS00580 0.64 -0.8 133,651 - AMB_RS00580 0.64 -0.2 133,651 - AMB_RS00580 0.64 +0.4 133,651 - AMB_RS00580 0.64 -0.6 133,651 - AMB_RS00580 0.64 -0.4 133,665 + AMB_RS00580 0.66 -0.5 133,963 - +0.2 134,182 + +0.3 134,199 + -0.1 134,200 - +0.5 134,220 + +0.5 134,239 + AMB_RS00585 0.11 -0.2 134,239 + AMB_RS00585 0.11 +0.4 134,239 + AMB_RS00585 0.11 +0.7 134,239 + AMB_RS00585 0.11 -0.3 134,240 - AMB_RS00585 0.11 -0.1 134,240 - AMB_RS00585 0.11 -0.0 134,295 + AMB_RS00585 0.19 -1.5 134,295 + AMB_RS00585 0.19 +0.2 134,363 + AMB_RS00585 0.29 -0.0 134,497 + AMB_RS00585 0.47 -3.3 134,498 - AMB_RS00585 0.48 +0.4 134,498 - AMB_RS00585 0.48 -0.3 134,498 - AMB_RS00585 0.48 -0.7 134,498 - AMB_RS00585 0.48 -0.3 134,498 - AMB_RS00585 0.48 -0.9 134,498 - AMB_RS00585 0.48 +0.1 134,498 - AMB_RS00585 0.48 -0.4 134,498 - AMB_RS00585 0.48 +0.3 134,599 + AMB_RS00585 0.62 -0.8 134,600 - AMB_RS00585 0.62 -0.9 134,662 + AMB_RS00585 0.71 -0.3 134,662 + AMB_RS00585 0.71 +0.1 134,663 - AMB_RS00585 0.71 -0.6 134,663 - AMB_RS00585 0.71 +0.1 134,708 - AMB_RS00585 0.77 +0.3 134,719 + AMB_RS00585 0.79 -0.4 134,720 - AMB_RS00585 0.79 -0.2 134,725 - AMB_RS00585 0.80 +0.0 134,725 - AMB_RS00585 0.80 -0.5 134,748 + AMB_RS00585 0.83 +0.2 134,767 + AMB_RS00585 0.86 +0.1 134,768 - AMB_RS00585 0.86 +0.0 134,768 - AMB_RS00585 0.86 -0.8 134,769 + AMB_RS00585 0.86 +1.2 134,770 - AMB_RS00585 0.86 -2.3 134,800 + -0.5 134,859 + +0.5 134,866 + -2.1 134,867 - -0.8 134,867 - -0.4 134,867 - +0.3
Or see this region's nucleotide sequence