Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS00580

Experiment: 150_nonmag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS23095 and AMB_RS00580 are separated by 69 nucleotidesAMB_RS00580 and AMB_RS00585 are separated by 139 nucleotidesAMB_RS00585 and AMB_RS00590 are separated by 27 nucleotides AMB_RS23095: AMB_RS23095 - class I SAM-dependent methyltransferase, at 131,919 to 132,917 _RS23095 AMB_RS00580: AMB_RS00580 - glycosyltransferase, at 132,987 to 134,021 _RS00580 AMB_RS00585: AMB_RS00585 - hypothetical protein, at 134,161 to 134,868 _RS00585 AMB_RS00590: AMB_RS00590 - radical SAM protein, at 134,896 to 135,693 _RS00590 Position (kb) 132 133 134 135Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 131.994 kb on - strandat 132.121 kb on - strand, within AMB_RS23095at 132.362 kb on + strand, within AMB_RS23095at 132.392 kb on + strand, within AMB_RS23095at 132.437 kb on + strand, within AMB_RS23095at 132.437 kb on + strand, within AMB_RS23095at 132.438 kb on - strand, within AMB_RS23095at 132.438 kb on - strand, within AMB_RS23095at 132.438 kb on - strand, within AMB_RS23095at 132.562 kb on + strand, within AMB_RS23095at 132.562 kb on + strand, within AMB_RS23095at 132.562 kb on + strand, within AMB_RS23095at 132.562 kb on + strand, within AMB_RS23095at 132.562 kb on + strand, within AMB_RS23095at 132.562 kb on + strand, within AMB_RS23095at 132.562 kb on + strand, within AMB_RS23095at 132.563 kb on - strand, within AMB_RS23095at 132.563 kb on - strand, within AMB_RS23095at 132.563 kb on - strand, within AMB_RS23095at 132.563 kb on - strand, within AMB_RS23095at 132.565 kb on - strand, within AMB_RS23095at 132.624 kb on + strand, within AMB_RS23095at 132.624 kb on + strand, within AMB_RS23095at 132.624 kb on + strand, within AMB_RS23095at 132.625 kb on - strand, within AMB_RS23095at 132.625 kb on - strand, within AMB_RS23095at 132.625 kb on - strand, within AMB_RS23095at 132.625 kb on - strand, within AMB_RS23095at 132.703 kb on + strand, within AMB_RS23095at 132.864 kb on + strandat 132.915 kb on + strandat 132.915 kb on + strandat 132.915 kb on + strandat 132.916 kb on - strandat 132.916 kb on - strandat 132.928 kb on - strandat 132.947 kb on - strandat 133.017 kb on + strandat 133.017 kb on + strandat 133.017 kb on + strandat 133.017 kb on + strandat 133.018 kb on - strandat 133.018 kb on - strandat 133.018 kb on - strandat 133.083 kb on + strandat 133.114 kb on - strand, within AMB_RS00580at 133.198 kb on + strand, within AMB_RS00580at 133.369 kb on + strand, within AMB_RS00580at 133.370 kb on - strand, within AMB_RS00580at 133.418 kb on + strand, within AMB_RS00580at 133.419 kb on - strand, within AMB_RS00580at 133.430 kb on + strand, within AMB_RS00580at 133.540 kb on + strand, within AMB_RS00580at 133.542 kb on + strand, within AMB_RS00580at 133.650 kb on + strand, within AMB_RS00580at 133.650 kb on + strand, within AMB_RS00580at 133.650 kb on + strand, within AMB_RS00580at 133.651 kb on - strand, within AMB_RS00580at 133.651 kb on - strand, within AMB_RS00580at 133.651 kb on - strand, within AMB_RS00580at 133.651 kb on - strand, within AMB_RS00580at 133.665 kb on + strand, within AMB_RS00580at 133.963 kb on - strandat 134.182 kb on + strandat 134.199 kb on + strandat 134.200 kb on - strandat 134.220 kb on + strandat 134.239 kb on + strand, within AMB_RS00585at 134.239 kb on + strand, within AMB_RS00585at 134.239 kb on + strand, within AMB_RS00585at 134.239 kb on + strand, within AMB_RS00585at 134.240 kb on - strand, within AMB_RS00585at 134.240 kb on - strand, within AMB_RS00585at 134.295 kb on + strand, within AMB_RS00585at 134.295 kb on + strand, within AMB_RS00585at 134.363 kb on + strand, within AMB_RS00585at 134.497 kb on + strand, within AMB_RS00585at 134.498 kb on - strand, within AMB_RS00585at 134.498 kb on - strand, within AMB_RS00585at 134.498 kb on - strand, within AMB_RS00585at 134.498 kb on - strand, within AMB_RS00585at 134.498 kb on - strand, within AMB_RS00585at 134.498 kb on - strand, within AMB_RS00585at 134.498 kb on - strand, within AMB_RS00585at 134.498 kb on - strand, within AMB_RS00585at 134.599 kb on + strand, within AMB_RS00585at 134.600 kb on - strand, within AMB_RS00585at 134.662 kb on + strand, within AMB_RS00585at 134.662 kb on + strand, within AMB_RS00585at 134.663 kb on - strand, within AMB_RS00585at 134.663 kb on - strand, within AMB_RS00585at 134.708 kb on - strand, within AMB_RS00585at 134.719 kb on + strand, within AMB_RS00585at 134.720 kb on - strand, within AMB_RS00585at 134.725 kb on - strand, within AMB_RS00585at 134.725 kb on - strand, within AMB_RS00585at 134.748 kb on + strand, within AMB_RS00585at 134.767 kb on + strand, within AMB_RS00585at 134.768 kb on - strand, within AMB_RS00585at 134.768 kb on - strand, within AMB_RS00585at 134.769 kb on + strand, within AMB_RS00585at 134.770 kb on - strand, within AMB_RS00585at 134.800 kb on + strandat 134.859 kb on + strandat 134.866 kb on + strandat 134.867 kb on - strandat 134.867 kb on - strandat 134.867 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_nonmag_1
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131,994 - -0.2
132,121 - AMB_RS23095 0.20 -0.9
132,362 + AMB_RS23095 0.44 +1.9
132,392 + AMB_RS23095 0.47 -1.4
132,437 + AMB_RS23095 0.52 -0.3
132,437 + AMB_RS23095 0.52 -0.5
132,438 - AMB_RS23095 0.52 -0.2
132,438 - AMB_RS23095 0.52 +1.1
132,438 - AMB_RS23095 0.52 -0.3
132,562 + AMB_RS23095 0.64 -1.2
132,562 + AMB_RS23095 0.64 -1.9
132,562 + AMB_RS23095 0.64 -0.6
132,562 + AMB_RS23095 0.64 -2.2
132,562 + AMB_RS23095 0.64 -1.5
132,562 + AMB_RS23095 0.64 -0.5
132,562 + AMB_RS23095 0.64 -0.6
132,563 - AMB_RS23095 0.64 -0.6
132,563 - AMB_RS23095 0.64 -2.5
132,563 - AMB_RS23095 0.64 -2.1
132,563 - AMB_RS23095 0.64 -0.5
132,565 - AMB_RS23095 0.65 -1.0
132,624 + AMB_RS23095 0.71 -1.0
132,624 + AMB_RS23095 0.71 -1.5
132,624 + AMB_RS23095 0.71 -1.2
132,625 - AMB_RS23095 0.71 -0.9
132,625 - AMB_RS23095 0.71 -2.3
132,625 - AMB_RS23095 0.71 -1.5
132,625 - AMB_RS23095 0.71 -1.4
132,703 + AMB_RS23095 0.78 -1.5
132,864 + -1.5
132,915 + -1.0
132,915 + -0.8
132,915 + -0.0
132,916 - -0.0
132,916 - -0.5
132,928 - -0.8
132,947 - -0.4
133,017 + +0.5
133,017 + -0.7
133,017 + -0.5
133,017 + -1.8
133,018 - +1.5
133,018 - -0.2
133,018 - -0.9
133,083 + -1.4
133,114 - AMB_RS00580 0.12 +0.0
133,198 + AMB_RS00580 0.20 -0.2
133,369 + AMB_RS00580 0.37 -0.3
133,370 - AMB_RS00580 0.37 -0.7
133,418 + AMB_RS00580 0.42 +0.7
133,419 - AMB_RS00580 0.42 -1.2
133,430 + AMB_RS00580 0.43 +0.5
133,540 + AMB_RS00580 0.53 -0.4
133,542 + AMB_RS00580 0.54 -0.8
133,650 + AMB_RS00580 0.64 -1.8
133,650 + AMB_RS00580 0.64 -0.4
133,650 + AMB_RS00580 0.64 -0.8
133,651 - AMB_RS00580 0.64 -0.2
133,651 - AMB_RS00580 0.64 +0.4
133,651 - AMB_RS00580 0.64 -0.6
133,651 - AMB_RS00580 0.64 -0.4
133,665 + AMB_RS00580 0.66 -0.5
133,963 - +0.2
134,182 + +0.3
134,199 + -0.1
134,200 - +0.5
134,220 + +0.5
134,239 + AMB_RS00585 0.11 -0.2
134,239 + AMB_RS00585 0.11 +0.4
134,239 + AMB_RS00585 0.11 +0.7
134,239 + AMB_RS00585 0.11 -0.3
134,240 - AMB_RS00585 0.11 -0.1
134,240 - AMB_RS00585 0.11 -0.0
134,295 + AMB_RS00585 0.19 -1.5
134,295 + AMB_RS00585 0.19 +0.2
134,363 + AMB_RS00585 0.29 -0.0
134,497 + AMB_RS00585 0.47 -3.3
134,498 - AMB_RS00585 0.48 +0.4
134,498 - AMB_RS00585 0.48 -0.3
134,498 - AMB_RS00585 0.48 -0.7
134,498 - AMB_RS00585 0.48 -0.3
134,498 - AMB_RS00585 0.48 -0.9
134,498 - AMB_RS00585 0.48 +0.1
134,498 - AMB_RS00585 0.48 -0.4
134,498 - AMB_RS00585 0.48 +0.3
134,599 + AMB_RS00585 0.62 -0.8
134,600 - AMB_RS00585 0.62 -0.9
134,662 + AMB_RS00585 0.71 -0.3
134,662 + AMB_RS00585 0.71 +0.1
134,663 - AMB_RS00585 0.71 -0.6
134,663 - AMB_RS00585 0.71 +0.1
134,708 - AMB_RS00585 0.77 +0.3
134,719 + AMB_RS00585 0.79 -0.4
134,720 - AMB_RS00585 0.79 -0.2
134,725 - AMB_RS00585 0.80 +0.0
134,725 - AMB_RS00585 0.80 -0.5
134,748 + AMB_RS00585 0.83 +0.2
134,767 + AMB_RS00585 0.86 +0.1
134,768 - AMB_RS00585 0.86 +0.0
134,768 - AMB_RS00585 0.86 -0.8
134,769 + AMB_RS00585 0.86 +1.2
134,770 - AMB_RS00585 0.86 -2.3
134,800 + -0.5
134,859 + +0.5
134,866 + -2.1
134,867 - -0.8
134,867 - -0.4
134,867 - +0.3

Or see this region's nucleotide sequence