Experiment: 150_nonmag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS00090 and AMB_RS00095 are separated by 70 nucleotides AMB_RS00095 and AMB_RS00100 are separated by 339 nucleotides
AMB_RS00090: AMB_RS00090 - DNA translocase FtsK, at 15,071 to 17,485
_RS00090
AMB_RS00095: AMB_RS00095 - outer membrane lipoprotein carrier protein LolA, at 17,556 to 18,212
_RS00095
AMB_RS00100: AMB_RS00100 - exodeoxyribonuclease III, at 18,552 to 19,343
_RS00100
Position (kb) 17
18
19 Strain fitness (log2 ratio) -2
-1
0
1
2 at 17.480 kb on + strand at 17.480 kb on + strand at 17.481 kb on - strand at 18.364 kb on + strand at 18.406 kb on + strand at 18.407 kb on - strand at 18.407 kb on - strand at 18.407 kb on - strand at 18.408 kb on + strand at 18.408 kb on + strand at 18.408 kb on + strand at 18.408 kb on + strand at 18.408 kb on + strand at 18.409 kb on - strand at 18.409 kb on - strand at 18.409 kb on - strand at 18.409 kb on - strand at 18.410 kb on + strand at 18.410 kb on + strand at 18.410 kb on + strand at 18.410 kb on + strand at 18.410 kb on + strand at 18.411 kb on - strand at 18.411 kb on - strand at 18.465 kb on + strand at 18.465 kb on + strand at 18.549 kb on + strand at 18.593 kb on + strand at 18.593 kb on + strand at 18.593 kb on + strand at 18.738 kb on + strand, within AMB_RS00100 at 18.738 kb on + strand, within AMB_RS00100 at 18.738 kb on + strand, within AMB_RS00100 at 18.739 kb on - strand, within AMB_RS00100 at 18.739 kb on - strand, within AMB_RS00100 at 18.739 kb on - strand, within AMB_RS00100 at 18.739 kb on - strand, within AMB_RS00100 at 18.864 kb on + strand, within AMB_RS00100 at 18.865 kb on - strand, within AMB_RS00100 at 19.177 kb on - strand, within AMB_RS00100
Per-strain Table
Position Strand Gene LocusTag Fraction 150_nonmag_1 remove 17,480 + +0.8 17,480 + +0.5 17,481 - +0.9 18,364 + +1.5 18,406 + -0.1 18,407 - +0.2 18,407 - -0.0 18,407 - +0.2 18,408 + -0.7 18,408 + +0.0 18,408 + -0.0 18,408 + -0.3 18,408 + -0.8 18,409 - +0.3 18,409 - -0.0 18,409 - -0.8 18,409 - -0.5 18,410 + +0.1 18,410 + -0.3 18,410 + +0.9 18,410 + +0.7 18,410 + -0.2 18,411 - +1.1 18,411 - +0.3 18,465 + +0.0 18,465 + -0.1 18,549 + -0.7 18,593 + +0.1 18,593 + +0.5 18,593 + -2.3 18,738 + AMB_RS00100 0.23 +2.2 18,738 + AMB_RS00100 0.23 +1.0 18,738 + AMB_RS00100 0.23 -0.4 18,739 - AMB_RS00100 0.24 +1.5 18,739 - AMB_RS00100 0.24 -0.0 18,739 - AMB_RS00100 0.24 -1.5 18,739 - AMB_RS00100 0.24 -0.3 18,864 + AMB_RS00100 0.39 +0.2 18,865 - AMB_RS00100 0.40 -0.7 19,177 - AMB_RS00100 0.79 -0.3
Or see this region's nucleotide sequence