Strain Fitness in Bosea sp. OAE506 around ABIE41_RS14785

Experiment: D-Glucuronic Acid (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE41_RS14780 and ABIE41_RS14785 are separated by 76 nucleotidesABIE41_RS14785 and ABIE41_RS14790 are separated by 135 nucleotides ABIE41_RS14780: ABIE41_RS14780 - CorA family divalent cation transporter, at 3,021,614 to 3,022,624 _RS14780 ABIE41_RS14785: ABIE41_RS14785 - GH25 family lysozyme, at 3,022,701 to 3,023,624 _RS14785 ABIE41_RS14790: ABIE41_RS14790 - GH25 family lysozyme, at 3,023,760 to 3,024,686 _RS14790 Position (kb) 3022 3023 3024Strain fitness (log2 ratio) -2 -1 0 1 2at 3021.802 kb on - strand, within ABIE41_RS14780at 3021.802 kb on - strand, within ABIE41_RS14780at 3021.802 kb on - strand, within ABIE41_RS14780at 3021.804 kb on - strand, within ABIE41_RS14780at 3022.993 kb on + strand, within ABIE41_RS14785at 3022.994 kb on - strand, within ABIE41_RS14785at 3022.994 kb on - strand, within ABIE41_RS14785at 3023.033 kb on - strand, within ABIE41_RS14785at 3023.089 kb on + strand, within ABIE41_RS14785at 3023.089 kb on + strand, within ABIE41_RS14785at 3023.090 kb on - strand, within ABIE41_RS14785at 3023.090 kb on - strand, within ABIE41_RS14785at 3023.537 kb on - strandat 3023.673 kb on + strandat 3023.684 kb on + strandat 3023.725 kb on + strandat 3023.755 kb on + strandat 3024.103 kb on + strand, within ABIE41_RS14790at 3024.154 kb on + strand, within ABIE41_RS14790at 3024.155 kb on - strand, within ABIE41_RS14790at 3024.361 kb on + strand, within ABIE41_RS14790at 3024.361 kb on + strand, within ABIE41_RS14790at 3024.362 kb on - strand, within ABIE41_RS14790at 3024.373 kb on + strand, within ABIE41_RS14790at 3024.374 kb on - strand, within ABIE41_RS14790at 3024.374 kb on - strand, within ABIE41_RS14790at 3024.374 kb on - strand, within ABIE41_RS14790

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucuronic Acid (C)
remove
3,021,802 - ABIE41_RS14780 0.19 +1.6
3,021,802 - ABIE41_RS14780 0.19 -0.7
3,021,802 - ABIE41_RS14780 0.19 -0.8
3,021,804 - ABIE41_RS14780 0.19 -0.0
3,022,993 + ABIE41_RS14785 0.32 -0.4
3,022,994 - ABIE41_RS14785 0.32 -0.1
3,022,994 - ABIE41_RS14785 0.32 -0.8
3,023,033 - ABIE41_RS14785 0.36 -0.8
3,023,089 + ABIE41_RS14785 0.42 -0.5
3,023,089 + ABIE41_RS14785 0.42 -0.4
3,023,090 - ABIE41_RS14785 0.42 +2.5
3,023,090 - ABIE41_RS14785 0.42 -0.3
3,023,537 - +0.2
3,023,673 + -0.4
3,023,684 + +0.3
3,023,725 + -0.7
3,023,755 + +0.0
3,024,103 + ABIE41_RS14790 0.37 +0.1
3,024,154 + ABIE41_RS14790 0.43 -0.5
3,024,155 - ABIE41_RS14790 0.43 +0.5
3,024,361 + ABIE41_RS14790 0.65 -0.7
3,024,361 + ABIE41_RS14790 0.65 -2.4
3,024,362 - ABIE41_RS14790 0.65 -0.2
3,024,373 + ABIE41_RS14790 0.66 -0.6
3,024,374 - ABIE41_RS14790 0.66 +1.6
3,024,374 - ABIE41_RS14790 0.66 -0.8
3,024,374 - ABIE41_RS14790 0.66 -0.7

Or see this region's nucleotide sequence