Strain Fitness in Bosea sp. OAE506 around ABIE41_RS12135

Experiment: D-Glucuronic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS12130 and ABIE41_RS12135 are separated by 4 nucleotidesABIE41_RS12135 and ABIE41_RS12140 are separated by 159 nucleotides ABIE41_RS12130: ABIE41_RS12130 - aldehyde dehydrogenase family protein, at 2,477,862 to 2,479,331 _RS12130 ABIE41_RS12135: ABIE41_RS12135 - haloacid dehalogenase type II, at 2,479,336 to 2,480,004 _RS12135 ABIE41_RS12140: ABIE41_RS12140 - FAD-binding oxidoreductase, at 2,480,164 to 2,481,486 _RS12140 Position (kb) 2479 2480 2481Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2478.688 kb on - strand, within ABIE41_RS12130at 2478.789 kb on + strand, within ABIE41_RS12130at 2478.790 kb on - strand, within ABIE41_RS12130at 2478.790 kb on - strand, within ABIE41_RS12130at 2478.887 kb on - strand, within ABIE41_RS12130at 2478.887 kb on - strand, within ABIE41_RS12130at 2479.283 kb on + strandat 2479.285 kb on + strandat 2479.285 kb on + strandat 2479.285 kb on + strandat 2479.285 kb on + strandat 2479.285 kb on + strandat 2479.286 kb on - strandat 2479.286 kb on - strandat 2479.286 kb on - strandat 2479.286 kb on - strandat 2479.286 kb on - strandat 2479.286 kb on - strandat 2479.391 kb on + strandat 2479.392 kb on - strandat 2479.535 kb on + strand, within ABIE41_RS12135at 2479.536 kb on - strand, within ABIE41_RS12135at 2479.562 kb on + strand, within ABIE41_RS12135at 2479.562 kb on + strand, within ABIE41_RS12135at 2479.562 kb on + strand, within ABIE41_RS12135at 2479.563 kb on - strand, within ABIE41_RS12135at 2479.587 kb on - strand, within ABIE41_RS12135at 2479.766 kb on + strand, within ABIE41_RS12135at 2479.766 kb on + strand, within ABIE41_RS12135at 2479.767 kb on - strand, within ABIE41_RS12135at 2479.767 kb on - strand, within ABIE41_RS12135at 2479.767 kb on - strand, within ABIE41_RS12135at 2479.767 kb on - strand, within ABIE41_RS12135at 2479.823 kb on + strand, within ABIE41_RS12135at 2479.860 kb on - strand, within ABIE41_RS12135at 2479.950 kb on - strandat 2479.965 kb on - strandat 2480.058 kb on + strandat 2480.341 kb on + strand, within ABIE41_RS12140at 2480.341 kb on + strand, within ABIE41_RS12140at 2480.342 kb on - strand, within ABIE41_RS12140at 2480.387 kb on + strand, within ABIE41_RS12140at 2480.387 kb on + strand, within ABIE41_RS12140at 2480.387 kb on + strand, within ABIE41_RS12140at 2480.387 kb on + strand, within ABIE41_RS12140at 2480.387 kb on + strand, within ABIE41_RS12140at 2480.387 kb on + strand, within ABIE41_RS12140at 2480.387 kb on + strand, within ABIE41_RS12140at 2480.387 kb on + strand, within ABIE41_RS12140at 2480.387 kb on + strand, within ABIE41_RS12140at 2480.387 kb on + strand, within ABIE41_RS12140at 2480.387 kb on + strand, within ABIE41_RS12140at 2480.387 kb on + strand, within ABIE41_RS12140at 2480.387 kb on + strand, within ABIE41_RS12140at 2480.387 kb on + strand, within ABIE41_RS12140at 2480.387 kb on + strand, within ABIE41_RS12140at 2480.387 kb on + strand, within ABIE41_RS12140at 2480.387 kb on + strand, within ABIE41_RS12140at 2480.387 kb on + strand, within ABIE41_RS12140at 2480.387 kb on + strand, within ABIE41_RS12140at 2480.388 kb on - strand, within ABIE41_RS12140at 2480.388 kb on - strand, within ABIE41_RS12140at 2480.388 kb on - strand, within ABIE41_RS12140at 2480.388 kb on - strand, within ABIE41_RS12140at 2480.388 kb on - strand, within ABIE41_RS12140at 2480.388 kb on - strand, within ABIE41_RS12140at 2480.388 kb on - strand, within ABIE41_RS12140at 2480.388 kb on - strand, within ABIE41_RS12140at 2480.388 kb on - strand, within ABIE41_RS12140at 2480.388 kb on - strand, within ABIE41_RS12140at 2480.388 kb on - strand, within ABIE41_RS12140at 2480.388 kb on - strand, within ABIE41_RS12140at 2480.388 kb on - strand, within ABIE41_RS12140at 2480.388 kb on - strand, within ABIE41_RS12140at 2480.690 kb on + strand, within ABIE41_RS12140at 2480.690 kb on + strand, within ABIE41_RS12140at 2480.690 kb on + strand, within ABIE41_RS12140at 2480.690 kb on + strand, within ABIE41_RS12140at 2480.690 kb on + strand, within ABIE41_RS12140at 2480.690 kb on + strand, within ABIE41_RS12140at 2480.690 kb on + strand, within ABIE41_RS12140at 2480.690 kb on + strand, within ABIE41_RS12140at 2480.691 kb on - strand, within ABIE41_RS12140at 2480.691 kb on - strand, within ABIE41_RS12140at 2480.691 kb on - strand, within ABIE41_RS12140at 2480.691 kb on - strand, within ABIE41_RS12140at 2480.691 kb on - strand, within ABIE41_RS12140at 2480.691 kb on - strand, within ABIE41_RS12140at 2480.691 kb on - strand, within ABIE41_RS12140at 2480.732 kb on + strand, within ABIE41_RS12140at 2480.733 kb on - strand, within ABIE41_RS12140at 2480.733 kb on - strand, within ABIE41_RS12140at 2480.733 kb on - strand, within ABIE41_RS12140at 2480.733 kb on - strand, within ABIE41_RS12140

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucuronic Acid (C)
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2,478,688 - ABIE41_RS12130 0.56 +0.7
2,478,789 + ABIE41_RS12130 0.63 -0.4
2,478,790 - ABIE41_RS12130 0.63 +0.4
2,478,790 - ABIE41_RS12130 0.63 -1.3
2,478,887 - ABIE41_RS12130 0.70 -0.5
2,478,887 - ABIE41_RS12130 0.70 +0.3
2,479,283 + -1.1
2,479,285 + -0.1
2,479,285 + -1.4
2,479,285 + -0.4
2,479,285 + -0.4
2,479,285 + -0.3
2,479,286 - -0.5
2,479,286 - -0.1
2,479,286 - +0.8
2,479,286 - -1.7
2,479,286 - +1.2
2,479,286 - +0.5
2,479,391 + +0.4
2,479,392 - +0.6
2,479,535 + ABIE41_RS12135 0.30 -0.8
2,479,536 - ABIE41_RS12135 0.30 +0.1
2,479,562 + ABIE41_RS12135 0.34 +0.2
2,479,562 + ABIE41_RS12135 0.34 +0.0
2,479,562 + ABIE41_RS12135 0.34 -0.0
2,479,563 - ABIE41_RS12135 0.34 -0.5
2,479,587 - ABIE41_RS12135 0.38 +0.5
2,479,766 + ABIE41_RS12135 0.64 +0.5
2,479,766 + ABIE41_RS12135 0.64 -1.1
2,479,767 - ABIE41_RS12135 0.64 -0.7
2,479,767 - ABIE41_RS12135 0.64 +0.0
2,479,767 - ABIE41_RS12135 0.64 -1.0
2,479,767 - ABIE41_RS12135 0.64 -0.2
2,479,823 + ABIE41_RS12135 0.73 +0.0
2,479,860 - ABIE41_RS12135 0.78 +0.2
2,479,950 - -0.2
2,479,965 - +0.9
2,480,058 + -1.7
2,480,341 + ABIE41_RS12140 0.13 -0.1
2,480,341 + ABIE41_RS12140 0.13 -0.2
2,480,342 - ABIE41_RS12140 0.13 +0.4
2,480,387 + ABIE41_RS12140 0.17 -0.1
2,480,387 + ABIE41_RS12140 0.17 +0.1
2,480,387 + ABIE41_RS12140 0.17 +1.3
2,480,387 + ABIE41_RS12140 0.17 +0.7
2,480,387 + ABIE41_RS12140 0.17 -1.1
2,480,387 + ABIE41_RS12140 0.17 -1.3
2,480,387 + ABIE41_RS12140 0.17 +0.6
2,480,387 + ABIE41_RS12140 0.17 +0.7
2,480,387 + ABIE41_RS12140 0.17 -0.7
2,480,387 + ABIE41_RS12140 0.17 -3.0
2,480,387 + ABIE41_RS12140 0.17 -2.5
2,480,387 + ABIE41_RS12140 0.17 -0.9
2,480,387 + ABIE41_RS12140 0.17 -0.9
2,480,387 + ABIE41_RS12140 0.17 +0.1
2,480,387 + ABIE41_RS12140 0.17 -0.2
2,480,387 + ABIE41_RS12140 0.17 +0.8
2,480,387 + ABIE41_RS12140 0.17 +0.6
2,480,387 + ABIE41_RS12140 0.17 -1.5
2,480,387 + ABIE41_RS12140 0.17 -2.1
2,480,388 - ABIE41_RS12140 0.17 +0.4
2,480,388 - ABIE41_RS12140 0.17 +0.8
2,480,388 - ABIE41_RS12140 0.17 +1.0
2,480,388 - ABIE41_RS12140 0.17 -0.6
2,480,388 - ABIE41_RS12140 0.17 +0.1
2,480,388 - ABIE41_RS12140 0.17 +0.0
2,480,388 - ABIE41_RS12140 0.17 +0.4
2,480,388 - ABIE41_RS12140 0.17 +1.1
2,480,388 - ABIE41_RS12140 0.17 +1.1
2,480,388 - ABIE41_RS12140 0.17 -0.4
2,480,388 - ABIE41_RS12140 0.17 +0.2
2,480,388 - ABIE41_RS12140 0.17 -2.7
2,480,388 - ABIE41_RS12140 0.17 -0.6
2,480,388 - ABIE41_RS12140 0.17 +0.1
2,480,690 + ABIE41_RS12140 0.40 +1.9
2,480,690 + ABIE41_RS12140 0.40 +0.1
2,480,690 + ABIE41_RS12140 0.40 +2.0
2,480,690 + ABIE41_RS12140 0.40 +1.5
2,480,690 + ABIE41_RS12140 0.40 +1.2
2,480,690 + ABIE41_RS12140 0.40 +1.7
2,480,690 + ABIE41_RS12140 0.40 +1.1
2,480,690 + ABIE41_RS12140 0.40 +0.3
2,480,691 - ABIE41_RS12140 0.40 -1.6
2,480,691 - ABIE41_RS12140 0.40 -2.0
2,480,691 - ABIE41_RS12140 0.40 -1.3
2,480,691 - ABIE41_RS12140 0.40 -0.6
2,480,691 - ABIE41_RS12140 0.40 -0.2
2,480,691 - ABIE41_RS12140 0.40 -0.8
2,480,691 - ABIE41_RS12140 0.40 -2.4
2,480,732 + ABIE41_RS12140 0.43 +0.2
2,480,733 - ABIE41_RS12140 0.43 -0.7
2,480,733 - ABIE41_RS12140 0.43 -1.8
2,480,733 - ABIE41_RS12140 0.43 -2.1
2,480,733 - ABIE41_RS12140 0.43 +0.1

Or see this region's nucleotide sequence