Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS30005

Experiment: L-Glutamine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE40_RS29995 and ABIE40_RS30000 are separated by 4 nucleotidesABIE40_RS30000 and ABIE40_RS30005 overlap by 4 nucleotidesABIE40_RS30005 and ABIE40_RS30010 overlap by 4 nucleotidesABIE40_RS30010 and ABIE40_RS30015 overlap by 4 nucleotides ABIE40_RS29995: ABIE40_RS29995 - aldo/keto reductase, at 689,471 to 690,931 _RS29995 ABIE40_RS30000: ABIE40_RS30000 - branched-chain amino acid ABC transporter permease, at 690,936 to 691,907 _RS30000 ABIE40_RS30005: ABIE40_RS30005 - branched-chain amino acid ABC transporter permease, at 691,904 to 692,815 _RS30005 ABIE40_RS30010: ABIE40_RS30010 - ABC transporter ATP-binding protein, at 692,812 to 693,552 _RS30010 ABIE40_RS30015: ABIE40_RS30015 - ABC transporter ATP-binding protein, at 693,549 to 694,325 _RS30015 Position (kb) 691 692 693Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 690.937 kb on + strandat 691.228 kb on + strand, within ABIE40_RS30000at 691.228 kb on + strand, within ABIE40_RS30000at 691.228 kb on + strand, within ABIE40_RS30000at 691.228 kb on + strand, within ABIE40_RS30000at 691.228 kb on + strand, within ABIE40_RS30000at 691.228 kb on + strand, within ABIE40_RS30000at 691.228 kb on + strand, within ABIE40_RS30000at 691.228 kb on + strand, within ABIE40_RS30000at 691.228 kb on + strand, within ABIE40_RS30000at 691.229 kb on - strand, within ABIE40_RS30000at 691.229 kb on - strand, within ABIE40_RS30000at 691.229 kb on - strand, within ABIE40_RS30000at 691.286 kb on + strand, within ABIE40_RS30000at 691.304 kb on + strand, within ABIE40_RS30000at 691.380 kb on + strand, within ABIE40_RS30000at 691.424 kb on + strand, within ABIE40_RS30000at 691.425 kb on - strand, within ABIE40_RS30000at 691.425 kb on - strand, within ABIE40_RS30000at 691.426 kb on + strand, within ABIE40_RS30000at 691.426 kb on + strand, within ABIE40_RS30000at 691.426 kb on + strand, within ABIE40_RS30000at 691.427 kb on - strand, within ABIE40_RS30000at 691.427 kb on - strand, within ABIE40_RS30000at 691.427 kb on - strand, within ABIE40_RS30000at 691.612 kb on + strand, within ABIE40_RS30000at 691.613 kb on - strand, within ABIE40_RS30000at 691.613 kb on - strand, within ABIE40_RS30000at 691.629 kb on + strand, within ABIE40_RS30000at 691.700 kb on + strand, within ABIE40_RS30000at 691.852 kb on + strandat 691.852 kb on + strandat 691.852 kb on + strandat 691.852 kb on + strandat 691.852 kb on + strandat 691.852 kb on + strandat 691.853 kb on - strandat 691.853 kb on - strandat 691.853 kb on - strandat 691.885 kb on + strandat 691.885 kb on + strandat 691.885 kb on + strandat 691.886 kb on - strandat 691.922 kb on + strandat 691.923 kb on - strandat 692.121 kb on + strand, within ABIE40_RS30005at 692.122 kb on - strand, within ABIE40_RS30005at 692.122 kb on - strand, within ABIE40_RS30005at 692.406 kb on + strand, within ABIE40_RS30005at 692.407 kb on - strand, within ABIE40_RS30005at 692.407 kb on - strand, within ABIE40_RS30005at 692.407 kb on - strand, within ABIE40_RS30005at 692.410 kb on - strand, within ABIE40_RS30005at 692.533 kb on + strand, within ABIE40_RS30005at 692.534 kb on - strand, within ABIE40_RS30005at 692.736 kb on + strandat 692.737 kb on - strandat 692.737 kb on - strandat 692.883 kb on + strandat 692.884 kb on - strandat 692.884 kb on - strandat 692.884 kb on - strandat 693.188 kb on + strand, within ABIE40_RS30010at 693.189 kb on - strand, within ABIE40_RS30010at 693.189 kb on - strand, within ABIE40_RS30010at 693.189 kb on - strand, within ABIE40_RS30010at 693.189 kb on - strand, within ABIE40_RS30010at 693.199 kb on + strand, within ABIE40_RS30010at 693.569 kb on - strandat 693.674 kb on + strand, within ABIE40_RS30015at 693.674 kb on + strand, within ABIE40_RS30015at 693.674 kb on + strand, within ABIE40_RS30015at 693.675 kb on - strand, within ABIE40_RS30015at 693.680 kb on + strand, within ABIE40_RS30015at 693.680 kb on + strand, within ABIE40_RS30015at 693.681 kb on - strand, within ABIE40_RS30015at 693.681 kb on - strand, within ABIE40_RS30015at 693.681 kb on - strand, within ABIE40_RS30015at 693.681 kb on - strand, within ABIE40_RS30015

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
remove
690,937 + +0.5
691,228 + ABIE40_RS30000 0.30 +0.5
691,228 + ABIE40_RS30000 0.30 -0.1
691,228 + ABIE40_RS30000 0.30 -0.4
691,228 + ABIE40_RS30000 0.30 -0.8
691,228 + ABIE40_RS30000 0.30 -0.9
691,228 + ABIE40_RS30000 0.30 -0.6
691,228 + ABIE40_RS30000 0.30 +1.5
691,228 + ABIE40_RS30000 0.30 -1.8
691,228 + ABIE40_RS30000 0.30 -0.6
691,229 - ABIE40_RS30000 0.30 -0.4
691,229 - ABIE40_RS30000 0.30 +0.4
691,229 - ABIE40_RS30000 0.30 -0.1
691,286 + ABIE40_RS30000 0.36 -2.3
691,304 + ABIE40_RS30000 0.38 -1.2
691,380 + ABIE40_RS30000 0.46 -2.2
691,424 + ABIE40_RS30000 0.50 +0.8
691,425 - ABIE40_RS30000 0.50 +0.1
691,425 - ABIE40_RS30000 0.50 +0.8
691,426 + ABIE40_RS30000 0.50 +0.9
691,426 + ABIE40_RS30000 0.50 -1.7
691,426 + ABIE40_RS30000 0.50 +0.3
691,427 - ABIE40_RS30000 0.51 +0.9
691,427 - ABIE40_RS30000 0.51 +0.3
691,427 - ABIE40_RS30000 0.51 +0.1
691,612 + ABIE40_RS30000 0.70 -3.0
691,613 - ABIE40_RS30000 0.70 +0.7
691,613 - ABIE40_RS30000 0.70 -0.2
691,629 + ABIE40_RS30000 0.71 +0.1
691,700 + ABIE40_RS30000 0.79 +0.1
691,852 + -1.4
691,852 + +0.6
691,852 + -0.4
691,852 + -1.1
691,852 + -0.7
691,852 + +0.6
691,853 - +0.3
691,853 - +0.1
691,853 - +0.6
691,885 + +2.0
691,885 + +1.3
691,885 + -0.4
691,886 - +0.4
691,922 + -0.6
691,923 - +0.9
692,121 + ABIE40_RS30005 0.24 -0.2
692,122 - ABIE40_RS30005 0.24 -2.1
692,122 - ABIE40_RS30005 0.24 -1.3
692,406 + ABIE40_RS30005 0.55 +0.8
692,407 - ABIE40_RS30005 0.55 +0.1
692,407 - ABIE40_RS30005 0.55 +1.2
692,407 - ABIE40_RS30005 0.55 -0.3
692,410 - ABIE40_RS30005 0.55 +1.4
692,533 + ABIE40_RS30005 0.69 -1.1
692,534 - ABIE40_RS30005 0.69 +0.0
692,736 + +0.3
692,737 - +0.7
692,737 - -0.8
692,883 + +1.7
692,884 - -0.3
692,884 - +0.3
692,884 - +0.0
693,188 + ABIE40_RS30010 0.51 -1.4
693,189 - ABIE40_RS30010 0.51 +0.1
693,189 - ABIE40_RS30010 0.51 +1.4
693,189 - ABIE40_RS30010 0.51 +0.5
693,189 - ABIE40_RS30010 0.51 -0.2
693,199 + ABIE40_RS30010 0.52 +0.2
693,569 - +1.4
693,674 + ABIE40_RS30015 0.16 +1.0
693,674 + ABIE40_RS30015 0.16 +0.2
693,674 + ABIE40_RS30015 0.16 -0.1
693,675 - ABIE40_RS30015 0.16 -0.8
693,680 + ABIE40_RS30015 0.17 +1.2
693,680 + ABIE40_RS30015 0.17 +0.2
693,681 - ABIE40_RS30015 0.17 +2.7
693,681 - ABIE40_RS30015 0.17 -2.1
693,681 - ABIE40_RS30015 0.17 -0.1
693,681 - ABIE40_RS30015 0.17 -0.4

Or see this region's nucleotide sequence