Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS29510

Experiment: L-Glutamine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE40_RS29495 and ABIE40_RS29500 are separated by 294 nucleotidesABIE40_RS29500 and ABIE40_RS29505 are separated by 161 nucleotidesABIE40_RS29505 and ABIE40_RS29510 are separated by 114 nucleotidesABIE40_RS29510 and ABIE40_RS29515 are separated by 12 nucleotidesABIE40_RS29515 and ABIE40_RS29520 are separated by 290 nucleotides ABIE40_RS29495: ABIE40_RS29495 - Rap1a/Tai family immunity protein, at 593,172 to 593,516 _RS29495 ABIE40_RS29500: ABIE40_RS29500 - hypothetical protein, at 593,811 to 593,954 _RS29500 ABIE40_RS29505: ABIE40_RS29505 - SDR family oxidoreductase, at 594,116 to 594,292 _RS29505 ABIE40_RS29510: ABIE40_RS29510 - sulfite exporter TauE/SafE family protein, at 594,407 to 595,162 _RS29510 ABIE40_RS29515: ABIE40_RS29515 - hypothetical protein, at 595,175 to 595,798 _RS29515 ABIE40_RS29520: ABIE40_RS29520 - hypothetical protein, at 596,089 to 596,334 _RS29520 Position (kb) 594 595 596Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 593.418 kb on + strand, within ABIE40_RS29495at 593.418 kb on + strand, within ABIE40_RS29495at 593.427 kb on + strand, within ABIE40_RS29495at 593.427 kb on + strand, within ABIE40_RS29495at 593.435 kb on + strand, within ABIE40_RS29495at 593.436 kb on - strand, within ABIE40_RS29495at 593.514 kb on + strandat 593.514 kb on + strandat 593.515 kb on - strandat 593.750 kb on - strandat 593.992 kb on + strandat 593.993 kb on - strandat 593.993 kb on - strandat 594.058 kb on + strandat 594.078 kb on + strandat 594.278 kb on + strandat 594.278 kb on + strandat 594.280 kb on + strandat 594.358 kb on + strandat 594.358 kb on + strandat 594.358 kb on + strandat 594.359 kb on - strandat 594.359 kb on - strandat 594.359 kb on - strandat 594.359 kb on - strandat 594.415 kb on + strandat 594.415 kb on + strandat 594.416 kb on - strandat 594.416 kb on - strandat 594.517 kb on - strand, within ABIE40_RS29510at 594.588 kb on - strand, within ABIE40_RS29510at 594.588 kb on - strand, within ABIE40_RS29510at 594.681 kb on + strand, within ABIE40_RS29510at 594.682 kb on - strand, within ABIE40_RS29510at 594.682 kb on - strand, within ABIE40_RS29510at 594.682 kb on - strand, within ABIE40_RS29510at 594.829 kb on - strand, within ABIE40_RS29510at 594.829 kb on - strand, within ABIE40_RS29510at 594.840 kb on - strand, within ABIE40_RS29510at 595.107 kb on + strandat 595.107 kb on + strandat 595.108 kb on - strandat 595.148 kb on + strandat 595.160 kb on + strandat 595.264 kb on + strand, within ABIE40_RS29515at 595.297 kb on + strand, within ABIE40_RS29515at 595.299 kb on + strand, within ABIE40_RS29515at 595.300 kb on - strand, within ABIE40_RS29515at 595.706 kb on - strand, within ABIE40_RS29515at 595.817 kb on + strandat 595.818 kb on - strandat 595.851 kb on - strandat 595.851 kb on - strandat 595.873 kb on + strandat 595.874 kb on - strandat 595.876 kb on + strandat 595.877 kb on - strandat 595.877 kb on - strandat 595.877 kb on - strandat 595.895 kb on + strandat 595.903 kb on + strandat 595.903 kb on + strandat 595.904 kb on - strandat 595.933 kb on + strandat 596.027 kb on + strandat 596.090 kb on + strandat 596.090 kb on + strandat 596.090 kb on + strandat 596.091 kb on - strandat 596.091 kb on - strandat 596.091 kb on - strandat 596.091 kb on - strandat 596.091 kb on - strandat 596.123 kb on + strand, within ABIE40_RS29520at 596.123 kb on + strand, within ABIE40_RS29520at 596.123 kb on + strand, within ABIE40_RS29520at 596.124 kb on - strand, within ABIE40_RS29520at 596.124 kb on - strand, within ABIE40_RS29520at 596.134 kb on + strand, within ABIE40_RS29520at 596.134 kb on + strand, within ABIE40_RS29520at 596.135 kb on - strand, within ABIE40_RS29520at 596.135 kb on - strand, within ABIE40_RS29520

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
remove
593,418 + ABIE40_RS29495 0.71 +0.9
593,418 + ABIE40_RS29495 0.71 -0.8
593,427 + ABIE40_RS29495 0.74 -0.2
593,427 + ABIE40_RS29495 0.74 +0.2
593,435 + ABIE40_RS29495 0.76 +1.3
593,436 - ABIE40_RS29495 0.77 -0.1
593,514 + -0.4
593,514 + -1.1
593,515 - -0.1
593,750 - +0.5
593,992 + +2.1
593,993 - -0.2
593,993 - +0.6
594,058 + +0.1
594,078 + -0.6
594,278 + +0.3
594,278 + +0.7
594,280 + -0.1
594,358 + -0.1
594,358 + -0.6
594,358 + -1.1
594,359 - +0.0
594,359 - -0.1
594,359 - -0.1
594,359 - +0.3
594,415 + +0.5
594,415 + -3.4
594,416 - +0.7
594,416 - -0.2
594,517 - ABIE40_RS29510 0.15 +0.9
594,588 - ABIE40_RS29510 0.24 -0.7
594,588 - ABIE40_RS29510 0.24 +0.1
594,681 + ABIE40_RS29510 0.36 -2.1
594,682 - ABIE40_RS29510 0.36 -0.7
594,682 - ABIE40_RS29510 0.36 -0.0
594,682 - ABIE40_RS29510 0.36 -0.5
594,829 - ABIE40_RS29510 0.56 -0.6
594,829 - ABIE40_RS29510 0.56 -0.1
594,840 - ABIE40_RS29510 0.57 -0.0
595,107 + -0.6
595,107 + +0.8
595,108 - +0.4
595,148 + -1.6
595,160 + -0.9
595,264 + ABIE40_RS29515 0.14 +0.5
595,297 + ABIE40_RS29515 0.20 +0.6
595,299 + ABIE40_RS29515 0.20 -1.1
595,300 - ABIE40_RS29515 0.20 -0.6
595,706 - ABIE40_RS29515 0.85 +0.4
595,817 + -0.5
595,818 - -1.5
595,851 - -0.0
595,851 - +0.5
595,873 + -0.1
595,874 - +0.2
595,876 + -1.5
595,877 - +1.0
595,877 - +0.4
595,877 - +1.7
595,895 + -0.0
595,903 + +0.3
595,903 + -1.0
595,904 - +1.2
595,933 + -0.2
596,027 + -1.0
596,090 + +1.5
596,090 + -0.9
596,090 + -0.3
596,091 - +0.3
596,091 - +0.1
596,091 - -0.3
596,091 - +0.5
596,091 - -0.3
596,123 + ABIE40_RS29520 0.14 -1.6
596,123 + ABIE40_RS29520 0.14 -0.9
596,123 + ABIE40_RS29520 0.14 -0.3
596,124 - ABIE40_RS29520 0.14 -0.4
596,124 - ABIE40_RS29520 0.14 +0.2
596,134 + ABIE40_RS29520 0.18 -1.5
596,134 + ABIE40_RS29520 0.18 +0.6
596,135 - ABIE40_RS29520 0.19 +0.2
596,135 - ABIE40_RS29520 0.19 +0.9

Or see this region's nucleotide sequence