Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS08600

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS08590 and ABIE40_RS08595 are separated by 153 nucleotidesABIE40_RS08595 and ABIE40_RS08600 are separated by 177 nucleotidesABIE40_RS08600 and ABIE40_RS08605 are separated by 178 nucleotidesABIE40_RS08605 and ABIE40_RS08610 are separated by 6 nucleotides ABIE40_RS08590: ABIE40_RS08590 - GDYXXLXY domain-containing protein, at 1,657,560 to 1,658,150 _RS08590 ABIE40_RS08595: ABIE40_RS08595 - tRNA-Leu, at 1,658,304 to 1,658,388 _RS08595 ABIE40_RS08600: ABIE40_RS08600 - trigger factor, at 1,658,566 to 1,660,041 _RS08600 ABIE40_RS08605: ABIE40_RS08605 - PAS domain-containing protein, at 1,660,220 to 1,660,747 _RS08605 ABIE40_RS08610: ABIE40_RS08610 - Si-specific NAD(P)(+) transhydrogenase, at 1,660,754 to 1,662,160 _RS08610 Position (kb) 1658 1659 1660 1661Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1657.600 kb on - strandat 1657.650 kb on + strand, within ABIE40_RS08590at 1657.652 kb on + strand, within ABIE40_RS08590at 1657.652 kb on + strand, within ABIE40_RS08590at 1657.652 kb on + strand, within ABIE40_RS08590at 1657.652 kb on + strand, within ABIE40_RS08590at 1657.652 kb on + strand, within ABIE40_RS08590at 1657.653 kb on - strand, within ABIE40_RS08590at 1657.653 kb on - strand, within ABIE40_RS08590at 1657.653 kb on - strand, within ABIE40_RS08590at 1657.654 kb on + strand, within ABIE40_RS08590at 1657.654 kb on + strand, within ABIE40_RS08590at 1657.654 kb on + strand, within ABIE40_RS08590at 1657.654 kb on + strand, within ABIE40_RS08590at 1657.654 kb on + strand, within ABIE40_RS08590at 1657.654 kb on + strand, within ABIE40_RS08590at 1657.654 kb on + strand, within ABIE40_RS08590at 1657.654 kb on + strand, within ABIE40_RS08590at 1657.655 kb on - strand, within ABIE40_RS08590at 1657.655 kb on - strand, within ABIE40_RS08590at 1657.655 kb on - strand, within ABIE40_RS08590at 1657.655 kb on - strand, within ABIE40_RS08590at 1657.657 kb on + strand, within ABIE40_RS08590at 1657.657 kb on + strand, within ABIE40_RS08590at 1657.657 kb on + strand, within ABIE40_RS08590at 1657.746 kb on + strand, within ABIE40_RS08590at 1657.747 kb on - strand, within ABIE40_RS08590at 1657.747 kb on - strand, within ABIE40_RS08590at 1657.747 kb on - strand, within ABIE40_RS08590at 1657.747 kb on - strand, within ABIE40_RS08590at 1657.762 kb on - strand, within ABIE40_RS08590at 1657.941 kb on + strand, within ABIE40_RS08590at 1657.941 kb on + strand, within ABIE40_RS08590at 1657.941 kb on + strand, within ABIE40_RS08590at 1657.941 kb on + strand, within ABIE40_RS08590at 1657.941 kb on + strand, within ABIE40_RS08590at 1657.942 kb on - strand, within ABIE40_RS08590at 1657.942 kb on - strand, within ABIE40_RS08590at 1657.942 kb on - strand, within ABIE40_RS08590at 1657.942 kb on - strand, within ABIE40_RS08590at 1657.942 kb on - strand, within ABIE40_RS08590at 1657.943 kb on + strand, within ABIE40_RS08590at 1657.943 kb on + strand, within ABIE40_RS08590at 1657.943 kb on + strand, within ABIE40_RS08590at 1657.943 kb on + strand, within ABIE40_RS08590at 1657.944 kb on - strand, within ABIE40_RS08590at 1657.944 kb on - strand, within ABIE40_RS08590at 1657.947 kb on + strand, within ABIE40_RS08590at 1657.947 kb on + strand, within ABIE40_RS08590at 1657.947 kb on + strand, within ABIE40_RS08590at 1657.948 kb on - strand, within ABIE40_RS08590at 1657.984 kb on - strand, within ABIE40_RS08590at 1657.998 kb on + strand, within ABIE40_RS08590at 1657.999 kb on - strand, within ABIE40_RS08590at 1657.999 kb on - strand, within ABIE40_RS08590at 1657.999 kb on - strand, within ABIE40_RS08590at 1658.001 kb on + strand, within ABIE40_RS08590at 1658.001 kb on + strand, within ABIE40_RS08590at 1658.001 kb on + strand, within ABIE40_RS08590at 1658.001 kb on + strand, within ABIE40_RS08590at 1658.002 kb on - strand, within ABIE40_RS08590at 1658.002 kb on - strand, within ABIE40_RS08590at 1658.002 kb on - strand, within ABIE40_RS08590at 1658.002 kb on - strand, within ABIE40_RS08590at 1658.002 kb on - strand, within ABIE40_RS08590at 1658.131 kb on - strandat 1658.243 kb on + strandat 1658.243 kb on + strandat 1658.243 kb on + strandat 1658.245 kb on + strandat 1658.283 kb on + strandat 1658.283 kb on + strandat 1658.283 kb on + strandat 1658.283 kb on + strandat 1658.283 kb on + strandat 1658.283 kb on + strandat 1658.445 kb on + strandat 1658.619 kb on + strandat 1658.711 kb on + strandat 1658.737 kb on + strand, within ABIE40_RS08600at 1659.091 kb on + strand, within ABIE40_RS08600at 1659.091 kb on + strand, within ABIE40_RS08600at 1659.091 kb on + strand, within ABIE40_RS08600at 1659.099 kb on + strand, within ABIE40_RS08600at 1659.415 kb on + strand, within ABIE40_RS08600at 1659.415 kb on + strand, within ABIE40_RS08600at 1659.475 kb on + strand, within ABIE40_RS08600at 1659.475 kb on + strand, within ABIE40_RS08600at 1659.475 kb on + strand, within ABIE40_RS08600at 1659.475 kb on + strand, within ABIE40_RS08600at 1659.475 kb on + strand, within ABIE40_RS08600at 1659.476 kb on - strand, within ABIE40_RS08600at 1659.514 kb on + strand, within ABIE40_RS08600at 1659.610 kb on + strand, within ABIE40_RS08600at 1659.611 kb on - strand, within ABIE40_RS08600at 1659.611 kb on - strand, within ABIE40_RS08600at 1659.711 kb on + strand, within ABIE40_RS08600at 1659.711 kb on + strand, within ABIE40_RS08600at 1659.711 kb on + strand, within ABIE40_RS08600at 1659.711 kb on + strand, within ABIE40_RS08600at 1659.711 kb on + strand, within ABIE40_RS08600at 1659.715 kb on + strand, within ABIE40_RS08600at 1660.112 kb on - strandat 1660.119 kb on + strandat 1660.120 kb on - strandat 1660.120 kb on - strandat 1660.141 kb on + strandat 1660.141 kb on + strandat 1660.174 kb on + strandat 1660.174 kb on + strandat 1660.297 kb on + strand, within ABIE40_RS08605at 1660.298 kb on - strand, within ABIE40_RS08605at 1660.299 kb on + strand, within ABIE40_RS08605at 1660.299 kb on + strand, within ABIE40_RS08605at 1660.299 kb on + strand, within ABIE40_RS08605at 1660.299 kb on + strand, within ABIE40_RS08605at 1660.299 kb on + strand, within ABIE40_RS08605at 1660.300 kb on - strand, within ABIE40_RS08605at 1660.300 kb on - strand, within ABIE40_RS08605at 1660.300 kb on - strand, within ABIE40_RS08605at 1660.300 kb on - strand, within ABIE40_RS08605at 1660.300 kb on - strand, within ABIE40_RS08605at 1660.316 kb on + strand, within ABIE40_RS08605at 1660.316 kb on + strand, within ABIE40_RS08605at 1660.316 kb on + strand, within ABIE40_RS08605at 1660.317 kb on - strand, within ABIE40_RS08605at 1660.317 kb on - strand, within ABIE40_RS08605at 1660.391 kb on + strand, within ABIE40_RS08605at 1660.391 kb on + strand, within ABIE40_RS08605at 1660.391 kb on + strand, within ABIE40_RS08605at 1660.391 kb on + strand, within ABIE40_RS08605at 1660.391 kb on + strand, within ABIE40_RS08605at 1660.392 kb on - strand, within ABIE40_RS08605at 1660.392 kb on - strand, within ABIE40_RS08605at 1660.392 kb on - strand, within ABIE40_RS08605at 1660.393 kb on + strand, within ABIE40_RS08605at 1660.394 kb on - strand, within ABIE40_RS08605at 1660.481 kb on + strand, within ABIE40_RS08605at 1660.482 kb on - strand, within ABIE40_RS08605at 1660.508 kb on + strand, within ABIE40_RS08605at 1660.508 kb on + strand, within ABIE40_RS08605at 1660.508 kb on + strand, within ABIE40_RS08605at 1660.508 kb on + strand, within ABIE40_RS08605at 1660.508 kb on + strand, within ABIE40_RS08605at 1660.508 kb on + strand, within ABIE40_RS08605at 1660.508 kb on + strand, within ABIE40_RS08605at 1660.508 kb on + strand, within ABIE40_RS08605at 1660.508 kb on + strand, within ABIE40_RS08605at 1660.509 kb on - strand, within ABIE40_RS08605at 1660.509 kb on - strand, within ABIE40_RS08605at 1660.509 kb on - strand, within ABIE40_RS08605at 1660.509 kb on - strand, within ABIE40_RS08605at 1660.509 kb on - strand, within ABIE40_RS08605at 1660.509 kb on - strand, within ABIE40_RS08605at 1660.509 kb on - strand, within ABIE40_RS08605at 1660.509 kb on - strand, within ABIE40_RS08605at 1660.514 kb on + strand, within ABIE40_RS08605at 1660.514 kb on + strand, within ABIE40_RS08605at 1660.515 kb on - strand, within ABIE40_RS08605at 1660.515 kb on - strand, within ABIE40_RS08605at 1660.515 kb on - strand, within ABIE40_RS08605at 1660.515 kb on - strand, within ABIE40_RS08605at 1660.515 kb on - strand, within ABIE40_RS08605at 1660.515 kb on - strand, within ABIE40_RS08605at 1660.515 kb on - strand, within ABIE40_RS08605at 1660.568 kb on + strand, within ABIE40_RS08605at 1660.569 kb on - strand, within ABIE40_RS08605at 1660.569 kb on - strand, within ABIE40_RS08605at 1660.643 kb on + strand, within ABIE40_RS08605at 1660.644 kb on - strand, within ABIE40_RS08605at 1660.644 kb on - strand, within ABIE40_RS08605at 1660.644 kb on - strand, within ABIE40_RS08605at 1660.670 kb on - strand, within ABIE40_RS08605at 1660.670 kb on - strand, within ABIE40_RS08605at 1660.670 kb on - strand, within ABIE40_RS08605at 1660.732 kb on + strandat 1660.732 kb on + strandat 1660.732 kb on + strandat 1660.732 kb on + strandat 1660.732 kb on + strandat 1660.733 kb on - strandat 1660.733 kb on - strandat 1660.733 kb on - strandat 1660.733 kb on - strandat 1660.733 kb on - strandat 1660.733 kb on - strandat 1660.733 kb on - strandat 1660.833 kb on + strandat 1660.834 kb on - strandat 1660.858 kb on - strandat 1660.987 kb on + strand, within ABIE40_RS08610at 1661.035 kb on + strand, within ABIE40_RS08610

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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1,657,600 - -0.3
1,657,650 + ABIE40_RS08590 0.15 +1.9
1,657,652 + ABIE40_RS08590 0.16 +0.6
1,657,652 + ABIE40_RS08590 0.16 -0.3
1,657,652 + ABIE40_RS08590 0.16 -0.6
1,657,652 + ABIE40_RS08590 0.16 -1.1
1,657,652 + ABIE40_RS08590 0.16 +1.4
1,657,653 - ABIE40_RS08590 0.16 -2.8
1,657,653 - ABIE40_RS08590 0.16 -1.3
1,657,653 - ABIE40_RS08590 0.16 -0.5
1,657,654 + ABIE40_RS08590 0.16 -0.6
1,657,654 + ABIE40_RS08590 0.16 -0.2
1,657,654 + ABIE40_RS08590 0.16 +0.2
1,657,654 + ABIE40_RS08590 0.16 +0.5
1,657,654 + ABIE40_RS08590 0.16 +2.1
1,657,654 + ABIE40_RS08590 0.16 -0.3
1,657,654 + ABIE40_RS08590 0.16 +0.3
1,657,654 + ABIE40_RS08590 0.16 -0.2
1,657,655 - ABIE40_RS08590 0.16 -0.0
1,657,655 - ABIE40_RS08590 0.16 +1.2
1,657,655 - ABIE40_RS08590 0.16 -0.2
1,657,655 - ABIE40_RS08590 0.16 -0.3
1,657,657 + ABIE40_RS08590 0.16 +0.6
1,657,657 + ABIE40_RS08590 0.16 +1.3
1,657,657 + ABIE40_RS08590 0.16 -0.0
1,657,746 + ABIE40_RS08590 0.31 +0.2
1,657,747 - ABIE40_RS08590 0.32 -0.3
1,657,747 - ABIE40_RS08590 0.32 -1.3
1,657,747 - ABIE40_RS08590 0.32 -0.7
1,657,747 - ABIE40_RS08590 0.32 -0.6
1,657,762 - ABIE40_RS08590 0.34 +1.5
1,657,941 + ABIE40_RS08590 0.64 -0.4
1,657,941 + ABIE40_RS08590 0.64 +0.4
1,657,941 + ABIE40_RS08590 0.64 +0.9
1,657,941 + ABIE40_RS08590 0.64 +1.4
1,657,941 + ABIE40_RS08590 0.64 +0.3
1,657,942 - ABIE40_RS08590 0.65 +0.1
1,657,942 - ABIE40_RS08590 0.65 -1.4
1,657,942 - ABIE40_RS08590 0.65 -0.4
1,657,942 - ABIE40_RS08590 0.65 -1.0
1,657,942 - ABIE40_RS08590 0.65 -0.4
1,657,943 + ABIE40_RS08590 0.65 -1.2
1,657,943 + ABIE40_RS08590 0.65 -1.5
1,657,943 + ABIE40_RS08590 0.65 +0.5
1,657,943 + ABIE40_RS08590 0.65 -0.4
1,657,944 - ABIE40_RS08590 0.65 +0.4
1,657,944 - ABIE40_RS08590 0.65 +0.2
1,657,947 + ABIE40_RS08590 0.65 +0.5
1,657,947 + ABIE40_RS08590 0.65 +1.3
1,657,947 + ABIE40_RS08590 0.65 -1.5
1,657,948 - ABIE40_RS08590 0.66 +0.2
1,657,984 - ABIE40_RS08590 0.72 +1.4
1,657,998 + ABIE40_RS08590 0.74 -2.1
1,657,999 - ABIE40_RS08590 0.74 -1.6
1,657,999 - ABIE40_RS08590 0.74 -0.3
1,657,999 - ABIE40_RS08590 0.74 -0.1
1,658,001 + ABIE40_RS08590 0.75 -0.7
1,658,001 + ABIE40_RS08590 0.75 -0.8
1,658,001 + ABIE40_RS08590 0.75 -0.5
1,658,001 + ABIE40_RS08590 0.75 -0.2
1,658,002 - ABIE40_RS08590 0.75 -0.9
1,658,002 - ABIE40_RS08590 0.75 -1.4
1,658,002 - ABIE40_RS08590 0.75 +0.0
1,658,002 - ABIE40_RS08590 0.75 -0.1
1,658,002 - ABIE40_RS08590 0.75 -0.1
1,658,131 - +0.4
1,658,243 + -1.7
1,658,243 + -1.7
1,658,243 + +0.6
1,658,245 + -0.7
1,658,283 + +0.2
1,658,283 + +1.2
1,658,283 + +0.2
1,658,283 + -0.4
1,658,283 + -0.9
1,658,283 + +0.6
1,658,445 + -1.8
1,658,619 + -1.5
1,658,711 + -1.1
1,658,737 + ABIE40_RS08600 0.12 -1.4
1,659,091 + ABIE40_RS08600 0.36 -0.7
1,659,091 + ABIE40_RS08600 0.36 -1.4
1,659,091 + ABIE40_RS08600 0.36 -4.5
1,659,099 + ABIE40_RS08600 0.36 -1.7
1,659,415 + ABIE40_RS08600 0.58 -2.4
1,659,415 + ABIE40_RS08600 0.58 -1.9
1,659,475 + ABIE40_RS08600 0.62 -1.8
1,659,475 + ABIE40_RS08600 0.62 -0.7
1,659,475 + ABIE40_RS08600 0.62 -2.0
1,659,475 + ABIE40_RS08600 0.62 -1.5
1,659,475 + ABIE40_RS08600 0.62 -1.3
1,659,476 - ABIE40_RS08600 0.62 -1.9
1,659,514 + ABIE40_RS08600 0.64 -0.0
1,659,610 + ABIE40_RS08600 0.71 -2.4
1,659,611 - ABIE40_RS08600 0.71 -2.3
1,659,611 - ABIE40_RS08600 0.71 -2.3
1,659,711 + ABIE40_RS08600 0.78 -0.7
1,659,711 + ABIE40_RS08600 0.78 -0.5
1,659,711 + ABIE40_RS08600 0.78 -1.5
1,659,711 + ABIE40_RS08600 0.78 -3.8
1,659,711 + ABIE40_RS08600 0.78 -1.2
1,659,715 + ABIE40_RS08600 0.78 -2.7
1,660,112 - -0.7
1,660,119 + +0.3
1,660,120 - -1.2
1,660,120 - +0.6
1,660,141 + +1.1
1,660,141 + -0.3
1,660,174 + +0.5
1,660,174 + -1.4
1,660,297 + ABIE40_RS08605 0.15 -0.2
1,660,298 - ABIE40_RS08605 0.15 -0.4
1,660,299 + ABIE40_RS08605 0.15 -0.4
1,660,299 + ABIE40_RS08605 0.15 -0.4
1,660,299 + ABIE40_RS08605 0.15 -0.7
1,660,299 + ABIE40_RS08605 0.15 -1.5
1,660,299 + ABIE40_RS08605 0.15 +0.4
1,660,300 - ABIE40_RS08605 0.15 +1.6
1,660,300 - ABIE40_RS08605 0.15 -0.6
1,660,300 - ABIE40_RS08605 0.15 +1.0
1,660,300 - ABIE40_RS08605 0.15 -0.6
1,660,300 - ABIE40_RS08605 0.15 -0.8
1,660,316 + ABIE40_RS08605 0.18 +0.1
1,660,316 + ABIE40_RS08605 0.18 -0.2
1,660,316 + ABIE40_RS08605 0.18 -0.1
1,660,317 - ABIE40_RS08605 0.18 -0.3
1,660,317 - ABIE40_RS08605 0.18 -0.7
1,660,391 + ABIE40_RS08605 0.32 -0.1
1,660,391 + ABIE40_RS08605 0.32 +1.0
1,660,391 + ABIE40_RS08605 0.32 -0.0
1,660,391 + ABIE40_RS08605 0.32 -0.4
1,660,391 + ABIE40_RS08605 0.32 -0.7
1,660,392 - ABIE40_RS08605 0.33 -2.3
1,660,392 - ABIE40_RS08605 0.33 -1.2
1,660,392 - ABIE40_RS08605 0.33 +0.3
1,660,393 + ABIE40_RS08605 0.33 -0.4
1,660,394 - ABIE40_RS08605 0.33 +0.0
1,660,481 + ABIE40_RS08605 0.49 -1.7
1,660,482 - ABIE40_RS08605 0.50 -0.1
1,660,508 + ABIE40_RS08605 0.55 -1.1
1,660,508 + ABIE40_RS08605 0.55 -0.0
1,660,508 + ABIE40_RS08605 0.55 -1.0
1,660,508 + ABIE40_RS08605 0.55 -2.3
1,660,508 + ABIE40_RS08605 0.55 +0.9
1,660,508 + ABIE40_RS08605 0.55 +0.3
1,660,508 + ABIE40_RS08605 0.55 -2.3
1,660,508 + ABIE40_RS08605 0.55 +0.6
1,660,508 + ABIE40_RS08605 0.55 -1.4
1,660,509 - ABIE40_RS08605 0.55 -1.3
1,660,509 - ABIE40_RS08605 0.55 +0.5
1,660,509 - ABIE40_RS08605 0.55 -0.2
1,660,509 - ABIE40_RS08605 0.55 -1.4
1,660,509 - ABIE40_RS08605 0.55 +0.4
1,660,509 - ABIE40_RS08605 0.55 -0.7
1,660,509 - ABIE40_RS08605 0.55 +0.6
1,660,509 - ABIE40_RS08605 0.55 +0.1
1,660,514 + ABIE40_RS08605 0.56 +0.4
1,660,514 + ABIE40_RS08605 0.56 -0.2
1,660,515 - ABIE40_RS08605 0.56 -0.3
1,660,515 - ABIE40_RS08605 0.56 +0.8
1,660,515 - ABIE40_RS08605 0.56 -0.0
1,660,515 - ABIE40_RS08605 0.56 +0.4
1,660,515 - ABIE40_RS08605 0.56 +0.1
1,660,515 - ABIE40_RS08605 0.56 +0.2
1,660,515 - ABIE40_RS08605 0.56 -1.6
1,660,568 + ABIE40_RS08605 0.66 +0.0
1,660,569 - ABIE40_RS08605 0.66 -0.1
1,660,569 - ABIE40_RS08605 0.66 +0.1
1,660,643 + ABIE40_RS08605 0.80 -0.9
1,660,644 - ABIE40_RS08605 0.80 -0.2
1,660,644 - ABIE40_RS08605 0.80 -0.1
1,660,644 - ABIE40_RS08605 0.80 -0.6
1,660,670 - ABIE40_RS08605 0.85 -0.6
1,660,670 - ABIE40_RS08605 0.85 -0.1
1,660,670 - ABIE40_RS08605 0.85 +1.1
1,660,732 + +0.9
1,660,732 + +1.9
1,660,732 + -0.2
1,660,732 + +0.2
1,660,732 + -0.1
1,660,733 - +0.3
1,660,733 - -0.7
1,660,733 - -0.3
1,660,733 - -0.8
1,660,733 - -0.7
1,660,733 - -3.0
1,660,733 - +0.4
1,660,833 + -0.9
1,660,834 - -0.8
1,660,858 - -0.8
1,660,987 + ABIE40_RS08610 0.17 -0.7
1,661,035 + ABIE40_RS08610 0.20 -0.7

Or see this region's nucleotide sequence