Experiment: L-Glutamine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS00235 and ABIE40_RS00240 are separated by 155 nucleotides ABIE40_RS00240 and ABIE40_RS00245 are separated by 10 nucleotides ABIE40_RS00245 and ABIE40_RS00250 are separated by 32 nucleotides ABIE40_RS00250 and ABIE40_RS00255 are separated by 99 nucleotides ABIE40_RS00255 and ABIE40_RS00260 are separated by 67 nucleotides
ABIE40_RS00235: ABIE40_RS00235 - cytochrome c family protein, at 51,096 to 51,674
_RS00235
ABIE40_RS00240: ABIE40_RS00240 - 3-deoxy-manno-octulosonate cytidylyltransferase, at 51,830 to 52,585
_RS00240
ABIE40_RS00245: ABIE40_RS00245 - prephenate dehydratase, at 52,596 to 53,456
_RS00245
ABIE40_RS00250: ABIE40_RS00250 - VOC family protein, at 53,489 to 53,857
_RS00250
ABIE40_RS00255: ABIE40_RS00255 - hypothetical protein, at 53,957 to 54,181
_RS00255
ABIE40_RS00260: ABIE40_RS00260 - YafY family protein, at 54,249 to 54,944
_RS00260
Position (kb) 52
53
54 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 51.657 kb on - strand at 51.664 kb on + strand at 51.707 kb on - strand at 51.715 kb on - strand at 51.739 kb on + strand at 51.739 kb on + strand at 51.740 kb on - strand at 51.769 kb on + strand at 51.769 kb on + strand at 51.769 kb on + strand at 51.769 kb on + strand at 51.815 kb on + strand at 51.815 kb on + strand at 52.591 kb on + strand at 52.591 kb on + strand at 52.591 kb on + strand at 52.592 kb on - strand at 52.592 kb on - strand at 52.592 kb on - strand at 52.592 kb on - strand at 52.592 kb on - strand at 52.592 kb on - strand at 52.592 kb on - strand at 52.592 kb on - strand at 52.592 kb on - strand at 52.793 kb on + strand, within ABIE40_RS00245 at 52.796 kb on - strand, within ABIE40_RS00245 at 52.826 kb on + strand, within ABIE40_RS00245 at 52.827 kb on - strand, within ABIE40_RS00245 at 52.839 kb on + strand, within ABIE40_RS00245 at 52.840 kb on - strand, within ABIE40_RS00245 at 53.068 kb on - strand, within ABIE40_RS00245 at 53.068 kb on - strand, within ABIE40_RS00245 at 53.078 kb on + strand, within ABIE40_RS00245 at 53.229 kb on + strand, within ABIE40_RS00245 at 53.229 kb on + strand, within ABIE40_RS00245 at 53.229 kb on + strand, within ABIE40_RS00245 at 53.229 kb on + strand, within ABIE40_RS00245 at 53.229 kb on + strand, within ABIE40_RS00245 at 53.229 kb on + strand, within ABIE40_RS00245 at 53.229 kb on + strand, within ABIE40_RS00245 at 53.229 kb on + strand, within ABIE40_RS00245 at 53.230 kb on - strand, within ABIE40_RS00245 at 53.230 kb on - strand, within ABIE40_RS00245 at 53.286 kb on + strand, within ABIE40_RS00245 at 53.286 kb on + strand, within ABIE40_RS00245 at 53.286 kb on + strand, within ABIE40_RS00245 at 53.287 kb on - strand, within ABIE40_RS00245 at 53.322 kb on + strand, within ABIE40_RS00245 at 53.322 kb on + strand, within ABIE40_RS00245 at 53.322 kb on + strand, within ABIE40_RS00245 at 53.322 kb on + strand, within ABIE40_RS00245 at 53.323 kb on - strand, within ABIE40_RS00245 at 53.323 kb on - strand, within ABIE40_RS00245 at 53.323 kb on - strand, within ABIE40_RS00245 at 53.323 kb on - strand, within ABIE40_RS00245 at 53.418 kb on + strand at 53.418 kb on + strand at 53.418 kb on + strand at 53.418 kb on + strand at 53.418 kb on + strand at 53.418 kb on + strand at 53.418 kb on + strand at 53.419 kb on - strand at 53.419 kb on - strand at 53.419 kb on - strand at 53.454 kb on + strand at 53.454 kb on + strand at 53.455 kb on - strand at 53.613 kb on + strand, within ABIE40_RS00250 at 53.613 kb on + strand, within ABIE40_RS00250 at 53.613 kb on + strand, within ABIE40_RS00250 at 53.613 kb on + strand, within ABIE40_RS00250 at 53.613 kb on + strand, within ABIE40_RS00250 at 53.613 kb on + strand, within ABIE40_RS00250 at 53.614 kb on - strand, within ABIE40_RS00250 at 53.614 kb on - strand, within ABIE40_RS00250 at 53.614 kb on - strand, within ABIE40_RS00250 at 53.616 kb on + strand, within ABIE40_RS00250 at 53.616 kb on + strand, within ABIE40_RS00250 at 53.616 kb on + strand, within ABIE40_RS00250 at 53.616 kb on + strand, within ABIE40_RS00250 at 53.617 kb on - strand, within ABIE40_RS00250 at 53.617 kb on - strand, within ABIE40_RS00250 at 53.617 kb on - strand, within ABIE40_RS00250 at 53.617 kb on - strand, within ABIE40_RS00250 at 53.796 kb on + strand, within ABIE40_RS00250 at 53.796 kb on + strand, within ABIE40_RS00250 at 53.797 kb on - strand, within ABIE40_RS00250 at 53.829 kb on + strand at 53.829 kb on + strand at 53.829 kb on + strand at 53.829 kb on + strand at 53.829 kb on + strand at 53.830 kb on - strand at 53.830 kb on - strand at 53.830 kb on - strand at 53.830 kb on - strand at 53.830 kb on - strand at 53.864 kb on - strand at 53.864 kb on - strand at 53.864 kb on - strand at 53.920 kb on + strand at 53.941 kb on + strand at 53.942 kb on - strand at 53.942 kb on - strand at 53.944 kb on + strand at 53.944 kb on + strand at 53.958 kb on + strand at 54.064 kb on + strand, within ABIE40_RS00255 at 54.065 kb on - strand, within ABIE40_RS00255 at 54.150 kb on + strand, within ABIE40_RS00255 at 54.151 kb on - strand, within ABIE40_RS00255 at 54.211 kb on + strand at 54.211 kb on + strand at 54.224 kb on + strand at 54.317 kb on - strand at 54.410 kb on + strand, within ABIE40_RS00260 at 54.421 kb on + strand, within ABIE40_RS00260
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (C) remove 51,657 - -2.2 51,664 + -0.1 51,707 - -0.3 51,715 - +0.1 51,739 + -0.8 51,739 + +1.1 51,740 - +0.8 51,769 + +1.5 51,769 + -0.5 51,769 + -0.2 51,769 + -0.2 51,815 + -0.2 51,815 + +1.8 52,591 + -1.5 52,591 + +0.3 52,591 + +0.1 52,592 - -3.8 52,592 - -4.7 52,592 - -4.3 52,592 - -5.2 52,592 - -3.5 52,592 - -3.2 52,592 - -3.0 52,592 - -1.8 52,592 - -2.5 52,793 + ABIE40_RS00245 0.23 -4.6 52,796 - ABIE40_RS00245 0.23 -3.2 52,826 + ABIE40_RS00245 0.27 -1.5 52,827 - ABIE40_RS00245 0.27 -3.3 52,839 + ABIE40_RS00245 0.28 -5.5 52,840 - ABIE40_RS00245 0.28 -4.5 53,068 - ABIE40_RS00245 0.55 -3.8 53,068 - ABIE40_RS00245 0.55 -1.7 53,078 + ABIE40_RS00245 0.56 -4.1 53,229 + ABIE40_RS00245 0.74 -3.3 53,229 + ABIE40_RS00245 0.74 -4.9 53,229 + ABIE40_RS00245 0.74 -2.8 53,229 + ABIE40_RS00245 0.74 -5.0 53,229 + ABIE40_RS00245 0.74 -5.2 53,229 + ABIE40_RS00245 0.74 -3.7 53,229 + ABIE40_RS00245 0.74 -4.5 53,229 + ABIE40_RS00245 0.74 +1.8 53,230 - ABIE40_RS00245 0.74 -0.2 53,230 - ABIE40_RS00245 0.74 +1.8 53,286 + ABIE40_RS00245 0.80 -4.9 53,286 + ABIE40_RS00245 0.80 -3.3 53,286 + ABIE40_RS00245 0.80 -5.5 53,287 - ABIE40_RS00245 0.80 -1.9 53,322 + ABIE40_RS00245 0.84 -6.2 53,322 + ABIE40_RS00245 0.84 -1.4 53,322 + ABIE40_RS00245 0.84 -3.8 53,322 + ABIE40_RS00245 0.84 -4.1 53,323 - ABIE40_RS00245 0.84 +0.3 53,323 - ABIE40_RS00245 0.84 -3.1 53,323 - ABIE40_RS00245 0.84 +0.8 53,323 - ABIE40_RS00245 0.84 -4.6 53,418 + -2.9 53,418 + -2.3 53,418 + -2.6 53,418 + -5.3 53,418 + -1.5 53,418 + -5.4 53,418 + -2.1 53,419 - -2.8 53,419 - -0.2 53,419 - -4.2 53,454 + -0.3 53,454 + -1.5 53,455 - -0.2 53,613 + ABIE40_RS00250 0.34 -1.7 53,613 + ABIE40_RS00250 0.34 -0.0 53,613 + ABIE40_RS00250 0.34 +0.6 53,613 + ABIE40_RS00250 0.34 -0.8 53,613 + ABIE40_RS00250 0.34 +0.4 53,613 + ABIE40_RS00250 0.34 -1.4 53,614 - ABIE40_RS00250 0.34 -1.8 53,614 - ABIE40_RS00250 0.34 +0.3 53,614 - ABIE40_RS00250 0.34 -0.3 53,616 + ABIE40_RS00250 0.34 +3.2 53,616 + ABIE40_RS00250 0.34 -0.2 53,616 + ABIE40_RS00250 0.34 +0.6 53,616 + ABIE40_RS00250 0.34 +0.4 53,617 - ABIE40_RS00250 0.35 +1.1 53,617 - ABIE40_RS00250 0.35 +1.1 53,617 - ABIE40_RS00250 0.35 +0.2 53,617 - ABIE40_RS00250 0.35 +0.3 53,796 + ABIE40_RS00250 0.83 -0.8 53,796 + ABIE40_RS00250 0.83 +0.1 53,797 - ABIE40_RS00250 0.83 -0.3 53,829 + +0.6 53,829 + +0.4 53,829 + +0.8 53,829 + +0.3 53,829 + +1.1 53,830 - +0.2 53,830 - +0.5 53,830 - -0.3 53,830 - +0.6 53,830 - -0.1 53,864 - +0.3 53,864 - +0.6 53,864 - -0.6 53,920 + +1.1 53,941 + -0.4 53,942 - +1.0 53,942 - +0.2 53,944 + +1.4 53,944 + +0.3 53,958 + +0.5 54,064 + ABIE40_RS00255 0.48 -2.5 54,065 - ABIE40_RS00255 0.48 +0.2 54,150 + ABIE40_RS00255 0.86 +0.0 54,151 - ABIE40_RS00255 0.86 -0.3 54,211 + -0.7 54,211 + +0.6 54,224 + -0.8 54,317 - -1.0 54,410 + ABIE40_RS00260 0.23 -1.0 54,421 + ABIE40_RS00260 0.25 +0.0
Or see this region's nucleotide sequence