Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS26960 and ABID97_RS26965 are separated by 180 nucleotides ABID97_RS26965 and ABID97_RS26970 are separated by 24 nucleotides ABID97_RS26970 and ABID97_RS26975 are separated by 75 nucleotides ABID97_RS26975 and ABID97_RS26980 are separated by 103 nucleotides
ABID97_RS26960: ABID97_RS26960 - AbrB/MazE/SpoVT family DNA-binding domain-containing protein, at 314,163 to 314,429
_RS26960
ABID97_RS26965: ABID97_RS26965 - hypothetical protein, at 314,610 to 314,834
_RS26965
ABID97_RS26970: ABID97_RS26970 - hypothetical protein, at 314,859 to 315,308
_RS26970
ABID97_RS26975: ABID97_RS26975 - LysR substrate-binding domain-containing protein, at 315,384 to 316,283
_RS26975
ABID97_RS26980: ABID97_RS26980 - mandelate racemase/muconate lactonizing enzyme family protein, at 316,387 to 317,553
_RS26980
Position (kb) 315
316
317 Strain fitness (log2 ratio) -1
0
1 at 314.607 kb on + strand at 314.607 kb on + strand at 314.608 kb on - strand at 314.608 kb on - strand at 314.634 kb on - strand, within ABID97_RS26965 at 314.677 kb on - strand, within ABID97_RS26965 at 314.682 kb on + strand, within ABID97_RS26965 at 314.682 kb on + strand, within ABID97_RS26965 at 314.683 kb on - strand, within ABID97_RS26965 at 314.683 kb on - strand, within ABID97_RS26965 at 314.683 kb on - strand, within ABID97_RS26965 at 314.778 kb on + strand, within ABID97_RS26965 at 314.820 kb on + strand at 314.821 kb on - strand at 314.821 kb on - strand at 315.127 kb on + strand, within ABID97_RS26970 at 315.128 kb on - strand, within ABID97_RS26970 at 315.128 kb on - strand, within ABID97_RS26970 at 315.350 kb on + strand at 315.685 kb on + strand, within ABID97_RS26975 at 315.685 kb on + strand, within ABID97_RS26975 at 316.303 kb on + strand at 316.303 kb on + strand at 316.304 kb on - strand at 316.447 kb on + strand at 316.447 kb on + strand at 316.852 kb on + strand, within ABID97_RS26980 at 316.852 kb on + strand, within ABID97_RS26980 at 316.853 kb on - strand, within ABID97_RS26980 at 316.900 kb on + strand, within ABID97_RS26980 at 316.901 kb on - strand, within ABID97_RS26980 at 316.917 kb on + strand, within ABID97_RS26980 at 316.918 kb on - strand, within ABID97_RS26980 at 317.081 kb on - strand, within ABID97_RS26980
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 314,607 + +1.0 314,607 + -0.1 314,608 - +1.0 314,608 - +0.3 314,634 - ABID97_RS26965 0.11 +0.3 314,677 - ABID97_RS26965 0.30 +0.0 314,682 + ABID97_RS26965 0.32 -0.1 314,682 + ABID97_RS26965 0.32 -0.3 314,683 - ABID97_RS26965 0.32 +0.9 314,683 - ABID97_RS26965 0.32 -1.2 314,683 - ABID97_RS26965 0.32 -0.6 314,778 + ABID97_RS26965 0.75 +0.0 314,820 + -0.3 314,821 - +0.1 314,821 - +0.0 315,127 + ABID97_RS26970 0.60 -0.1 315,128 - ABID97_RS26970 0.60 -0.5 315,128 - ABID97_RS26970 0.60 -0.2 315,350 + -0.2 315,685 + ABID97_RS26975 0.33 -0.4 315,685 + ABID97_RS26975 0.33 -0.4 316,303 + -0.1 316,303 + -0.3 316,304 - +0.2 316,447 + -0.9 316,447 + -0.3 316,852 + ABID97_RS26980 0.40 -1.4 316,852 + ABID97_RS26980 0.40 -0.3 316,853 - ABID97_RS26980 0.40 -0.8 316,900 + ABID97_RS26980 0.44 +0.1 316,901 - ABID97_RS26980 0.44 -0.6 316,917 + ABID97_RS26980 0.45 +0.2 316,918 - ABID97_RS26980 0.46 +0.0 317,081 - ABID97_RS26980 0.59 -1.0
Or see this region's nucleotide sequence