Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS26255 and ABID97_RS26260 are separated by 23 nucleotides ABID97_RS26260 and ABID97_RS26265 are separated by 160 nucleotides ABID97_RS26265 and ABID97_RS26270 are separated by 38 nucleotides
ABID97_RS26255: ABID97_RS26255 - MBL fold metallo-hydrolase, at 175,979 to 176,932
_RS26255
ABID97_RS26260: ABID97_RS26260 - 4-oxalocrotonate tautomerase family protein, at 176,956 to 177,255
_RS26260
ABID97_RS26265: ABID97_RS26265 - nuclear transport factor 2 family protein, at 177,416 to 177,895
_RS26265
ABID97_RS26270: ABID97_RS26270 - Gfo/Idh/MocA family oxidoreductase, at 177,934 to 179,040
_RS26270
Position (kb) 177
178 Strain fitness (log2 ratio) -2
-1
0
1 at 177.238 kb on + strand at 177.238 kb on + strand at 177.239 kb on - strand at 177.477 kb on - strand, within ABID97_RS26265 at 177.705 kb on - strand, within ABID97_RS26265 at 178.208 kb on - strand, within ABID97_RS26270 at 178.325 kb on + strand, within ABID97_RS26270 at 178.326 kb on - strand, within ABID97_RS26270 at 178.804 kb on + strand, within ABID97_RS26270 at 178.804 kb on + strand, within ABID97_RS26270 at 178.805 kb on - strand, within ABID97_RS26270 at 178.859 kb on + strand, within ABID97_RS26270
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 177,238 + -1.9 177,238 + +0.1 177,239 - -0.3 177,477 - ABID97_RS26265 0.13 -0.9 177,705 - ABID97_RS26265 0.60 +0.3 178,208 - ABID97_RS26270 0.25 +0.1 178,325 + ABID97_RS26270 0.35 +0.8 178,326 - ABID97_RS26270 0.35 +0.0 178,804 + ABID97_RS26270 0.79 -0.2 178,804 + ABID97_RS26270 0.79 -0.6 178,805 - ABID97_RS26270 0.79 +1.0 178,859 + ABID97_RS26270 0.84 +0.4
Or see this region's nucleotide sequence