Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS19435 and ABID97_RS19440 are separated by 1 nucleotides ABID97_RS19440 and ABID97_RS19445 are separated by 105 nucleotides ABID97_RS19445 and ABID97_RS19450 are separated by 23 nucleotides
ABID97_RS19435: ABID97_RS19435 - 3-oxoacid CoA-transferase subunit B, at 4,013,447 to 4,014,085
_RS19435
ABID97_RS19440: ABID97_RS19440 - CoA transferase subunit A, at 4,014,087 to 4,014,890
_RS19440
ABID97_RS19445: ABID97_RS19445 - LuxR C-terminal-related transcriptional regulator, at 4,014,996 to 4,015,562
_RS19445
ABID97_RS19450: ABID97_RS19450 - tripartite tricarboxylate transporter substrate binding protein, at 4,015,586 to 4,016,563
_RS19450
Position (kb) 4014
4015
4016 Strain fitness (log2 ratio) -1
0
1 at 4014.025 kb on - strand at 4014.262 kb on + strand, within ABID97_RS19440 at 4014.263 kb on - strand, within ABID97_RS19440 at 4014.466 kb on + strand, within ABID97_RS19440 at 4014.878 kb on - strand at 4014.956 kb on - strand at 4014.956 kb on - strand at 4014.956 kb on - strand at 4014.956 kb on - strand at 4014.959 kb on + strand at 4014.967 kb on + strand at 4014.968 kb on - strand at 4015.219 kb on - strand, within ABID97_RS19445 at 4015.513 kb on - strand at 4015.677 kb on + strand at 4015.678 kb on - strand at 4015.678 kb on - strand at 4016.008 kb on - strand, within ABID97_RS19450 at 4016.094 kb on + strand, within ABID97_RS19450 at 4016.094 kb on + strand, within ABID97_RS19450 at 4016.274 kb on + strand, within ABID97_RS19450 at 4016.275 kb on - strand, within ABID97_RS19450 at 4016.302 kb on - strand, within ABID97_RS19450
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 4,014,025 - -0.1 4,014,262 + ABID97_RS19440 0.22 -0.9 4,014,263 - ABID97_RS19440 0.22 -1.4 4,014,466 + ABID97_RS19440 0.47 +0.4 4,014,878 - -0.6 4,014,956 - -1.0 4,014,956 - -0.6 4,014,956 - -0.0 4,014,956 - -0.1 4,014,959 + -1.3 4,014,967 + -0.1 4,014,968 - -1.2 4,015,219 - ABID97_RS19445 0.39 -0.0 4,015,513 - -0.4 4,015,677 + +0.3 4,015,678 - -1.1 4,015,678 - -0.3 4,016,008 - ABID97_RS19450 0.43 -1.5 4,016,094 + ABID97_RS19450 0.52 -0.9 4,016,094 + ABID97_RS19450 0.52 -0.2 4,016,274 + ABID97_RS19450 0.70 +0.4 4,016,275 - ABID97_RS19450 0.70 -0.8 4,016,302 - ABID97_RS19450 0.73 +0.1
Or see this region's nucleotide sequence